Wall clock time and date at job start Tue Mar 31 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.99725 * 2 1 4 4 C 1.54336 * 109.98909 * 238.96663 * 2 1 3 5 5 H 1.09005 * 110.51699 * 336.97721 * 4 2 1 6 6 N 1.46496 * 111.00292 * 100.12656 * 4 2 1 7 7 C 1.34776 * 119.99940 * 200.23597 * 6 4 2 8 8 O 1.21284 * 120.00247 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99875 * 180.02562 * 7 6 4 10 10 N 1.46497 * 109.46956 * 180.02562 * 9 7 6 11 11 C 1.33794 * 124.17593 * 269.69540 * 10 9 7 12 12 O 1.21539 * 123.76976 * 0.03872 * 11 10 9 13 13 N 1.34529 * 112.45702 * 179.86949 * 11 10 9 14 14 C 1.47309 * 106.62157 * 0.37758 * 13 11 10 15 15 C 1.52993 * 110.60205 * 241.25567 * 14 13 11 16 16 C 1.52996 * 110.59781 * 118.30757 * 14 13 11 17 17 C 1.34771 * 124.18047 * 90.00000 * 10 9 7 18 18 O 1.21235 * 127.15685 * 359.97438 * 17 10 9 19 19 C 1.55151 * 103.01975 * 218.66643 * 4 2 1 20 20 C 1.54911 * 101.58164 * 35.30733 * 19 4 2 21 21 N 1.47017 * 109.88029 * 121.09997 * 2 1 3 22 22 C 1.36938 * 125.65154 * 298.39240 * 21 2 1 23 23 H 1.08004 * 119.99614 * 344.50808 * 22 21 2 24 24 C 1.38805 * 120.00288 * 164.51045 * 22 21 2 25 25 N 1.31624 * 120.00031 * 350.15683 * 24 22 21 26 26 Si 1.86803 * 120.00101 * 170.15569 * 24 22 21 27 27 H 1.48498 * 109.46814 * 84.95261 * 26 24 22 28 28 H 1.48505 * 109.47237 * 204.95033 * 26 24 22 29 29 H 1.48496 * 109.47070 * 324.95222 * 26 24 22 30 30 H 1.09010 * 109.46750 * 300.35724 * 1 2 3 31 31 H 1.09001 * 109.46826 * 60.35155 * 1 2 3 32 32 H 1.08999 * 109.47387 * 180.35740 * 1 2 3 33 33 H 0.97003 * 120.00066 * 20.23307 * 6 4 2 34 34 H 1.09005 * 109.46633 * 299.99459 * 9 7 6 35 35 H 1.08997 * 109.47330 * 59.99213 * 9 7 6 36 36 H 0.97003 * 126.68547 * 180.13105 * 13 11 10 37 37 H 1.09001 * 109.47400 * 174.16908 * 15 14 13 38 38 H 1.09002 * 109.47401 * 294.17342 * 15 14 13 39 39 H 1.09003 * 109.47049 * 54.17476 * 15 14 13 40 40 H 1.09003 * 109.47121 * 305.82645 * 16 14 13 41 41 H 1.09001 * 109.47038 * 65.82689 * 16 14 13 42 42 H 1.09002 * 109.47170 * 185.82965 * 16 14 13 43 43 H 1.08994 * 111.00755 * 277.23529 * 19 4 2 44 44 H 1.09005 * 111.03859 * 153.38838 * 19 4 2 45 45 H 1.09006 * 110.36587 * 204.15097 * 20 19 4 46 46 H 1.09000 * 110.37063 * 81.83344 * 20 19 4 47 47 H 0.97004 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1939 -2.2892 7 6 2.5608 -0.2208 -3.5679 8 8 2.3134 -1.3736 -3.8522 9 6 2.9784 0.7477 -4.6443 10 7 3.0077 0.0585 -5.9367 11 6 4.0846 -0.5603 -6.4342 12 8 5.1558 -0.6162 -5.8628 13 7 3.8480 -1.1170 -7.6358 14 6 2.4447 -0.8184 -7.9696 15 6 1.6411 -2.1111 -8.1238 16 6 2.3620 0.0237 -9.2443 17 6 1.9550 -0.0254 -6.7740 18 8 0.8471 0.4372 -6.6061 19 6 3.2863 -1.5183 -0.6916 20 6 2.8098 -1.8826 0.7367 21 7 2.0300 -0.7141 1.1838 22 6 1.8038 -0.3566 2.4862 23 1 1.4373 0.6324 2.7188 24 6 2.0456 -1.2651 3.5074 25 7 2.3041 -2.5236 3.2212 26 14 2.0042 -0.7018 5.2880 27 1 0.6049 -0.7317 5.7841 28 1 2.8416 -1.6086 6.1137 29 1 2.5332 0.6826 5.3816 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5084 -0.8931 32 1 -0.3634 -1.0276 0.0064 33 1 2.6612 1.1158 -2.0619 34 1 2.2658 1.5714 -4.6883 35 1 3.9707 1.1375 -4.4173 36 1 4.4796 -1.6146 -8.1785 37 1 0.5880 -1.8695 -8.2675 38 1 2.0078 -2.6661 -8.9874 39 1 1.7551 -2.7190 -7.2262 40 1 2.9817 0.9135 -9.1328 41 1 2.7179 -0.5631 -10.0911 42 1 1.3276 0.3208 -9.4172 43 1 4.1669 -0.8769 -0.6580 44 1 3.4812 -2.4156 -1.2791 45 1 3.6655 -2.0414 1.3930 46 1 2.1801 -2.7719 0.7113 47 1 2.4727 -3.1586 3.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089020848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:53 Heat of formation + Delta-G solvation = -48.571439 kcal Electronic energy + Delta-G solvation = -30333.055937 eV Core-core repulsion = 26131.758598 eV Total energy + Delta-G solvation = -4201.297339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.85128 -39.70110 -38.87334 -37.65213 -36.83982 -35.41128 -34.06503 -32.13975 -31.79579 -30.39552 -29.49493 -28.18095 -28.02390 -24.90115 -24.31973 -23.98015 -22.44460 -21.12932 -20.49263 -20.18355 -19.62112 -18.26111 -17.70070 -16.86668 -16.62109 -16.28485 -16.14052 -16.00398 -15.42195 -14.98840 -14.81645 -14.58341 -14.41509 -14.03872 -13.96518 -13.61749 -13.36519 -13.13453 -12.84306 -12.76183 -12.73047 -12.54318 -12.10582 -12.07239 -12.00243 -11.55210 -11.09939 -11.08813 -10.94341 -10.78013 -10.64735 -10.57328 -10.42665 -10.34142 -10.06242 -9.87581 -9.85857 -9.68090 -9.50866 -8.73066 -8.57723 -6.80383 -5.76262 -3.11699 1.35707 1.78403 2.61582 2.69228 2.77486 3.31822 3.39220 3.44915 3.46500 3.55470 4.07029 4.28911 4.47906 4.60728 4.66265 4.88486 4.97046 5.02848 5.05847 5.14719 5.18306 5.28790 5.39632 5.42736 5.45876 5.51357 5.59560 5.65466 5.81598 6.13409 6.21989 6.31541 6.35910 6.46146 6.50308 6.61687 6.69930 6.73214 6.90190 7.06460 7.12033 7.43886 7.57492 7.63764 7.76191 7.85600 8.23401 8.28099 9.16609 9.78929 10.47435 11.36798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002387 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.416125 B =11729.405401 C =12031.313785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.137 3.863 5 H 0.092 0.908 6 N -0.709 5.709 7 C 0.500 3.500 8 O -0.532 6.532 9 C 0.098 3.902 10 N -0.560 5.560 11 C 0.709 3.291 12 O -0.538 6.538 13 N -0.720 5.720 14 C 0.120 3.880 15 C -0.149 4.149 16 C -0.146 4.146 17 C 0.535 3.465 18 O -0.461 6.461 19 C -0.153 4.153 20 C 0.176 3.824 21 N -0.592 5.592 22 C -0.230 4.230 23 H 0.074 0.926 24 C -0.003 4.003 25 N -0.914 5.914 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.400 0.600 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.439 0.561 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 6.393 -26.597 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.360 5.360 7 C 0.284 3.716 8 O -0.408 6.408 9 C -0.028 4.028 10 N -0.305 5.305 11 C 0.410 3.590 12 O -0.410 6.410 13 N -0.385 5.385 14 C 0.030 3.970 15 C -0.207 4.207 16 C -0.205 4.205 17 C 0.322 3.678 18 O -0.329 6.329 19 C -0.193 4.193 20 C 0.050 3.950 21 N -0.317 5.317 22 C -0.359 4.359 23 H 0.092 0.908 24 C -0.201 4.201 25 N -0.559 5.559 26 Si 0.740 3.260 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.234 0.766 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.284 0.716 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.986 5.725 -26.072 26.712 hybrid contribution 0.302 0.364 0.989 1.096 sum 1.288 6.089 -25.083 25.844 Atomic orbital electron populations 1.22225 0.97722 1.01493 0.99903 1.21028 0.92579 0.94832 0.86831 0.94630 1.22142 0.97443 0.90810 0.86319 0.89009 1.45951 1.68922 1.14417 1.06742 1.20579 0.78066 0.89188 0.83781 1.90719 1.49236 1.18776 1.82071 1.21509 1.06439 0.94701 0.80137 1.45820 1.13264 1.52069 1.19369 1.15757 0.83435 0.78157 0.81666 1.91036 1.24362 1.62784 1.62847 1.45619 1.13114 1.59166 1.20630 1.21459 0.82944 0.97441 0.95161 1.22017 1.00452 0.94140 1.04061 1.22015 1.04359 0.99663 0.94425 1.20786 0.84019 0.78769 0.84251 1.90802 1.18927 1.46235 1.76940 1.23371 0.96820 0.99524 0.99586 1.21334 0.95231 0.89794 0.88593 1.44475 1.58147 1.29008 1.00094 1.18896 1.39927 0.96529 0.80507 0.90792 1.24904 1.02009 0.95077 0.98102 1.69958 1.53256 1.01557 1.31158 0.86190 0.77514 0.77650 0.84663 1.21459 1.21610 1.20690 0.92534 0.94492 0.92923 0.76587 0.85726 0.85453 0.71633 0.89752 0.90219 0.90758 0.91337 0.90136 0.89668 0.91922 0.91843 0.91956 0.94870 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.16 3.10 3.49 -66.95 -0.23 2.87 16 3 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 4 C 0.14 2.51 2.76 -66.09 -0.18 2.33 16 5 H 0.09 1.84 7.39 -51.93 -0.38 1.46 16 6 N -0.71 -10.19 5.21 -52.03 -0.27 -10.46 16 7 C 0.50 7.47 7.90 -10.98 -0.09 7.39 16 8 O -0.53 -10.10 16.16 5.55 0.09 -10.01 16 9 C 0.10 1.06 6.18 -5.19 -0.03 1.03 16 10 N -0.56 -6.57 2.09 -122.02 -0.26 -6.82 16 11 C 0.71 8.60 8.62 -88.02 -0.76 7.84 16 12 O -0.54 -8.36 17.48 5.33 0.09 -8.27 16 13 N -0.72 -5.72 5.90 -52.94 -0.31 -6.03 16 14 C 0.12 0.89 1.37 -132.10 -0.18 0.70 16 15 C -0.15 -0.96 8.99 37.15 0.33 -0.63 16 16 C -0.15 -0.65 8.99 37.16 0.33 -0.31 16 17 C 0.54 5.91 6.98 -10.55 -0.07 5.83 16 18 O -0.46 -6.07 17.76 5.60 0.10 -5.97 16 19 C -0.15 -3.07 6.77 -24.58 -0.17 -3.24 16 20 C 0.18 4.29 5.36 -2.53 -0.01 4.28 16 21 N -0.59 -14.74 3.12 -162.56 -0.51 -15.24 16 22 C -0.23 -6.26 9.81 -15.06 -0.15 -6.41 16 23 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 24 C 0.00 -0.09 5.38 -17.43 -0.09 -0.19 16 25 N -0.91 -26.80 10.92 55.49 0.61 -26.20 16 26 Si 0.91 21.89 29.57 -169.99 -5.03 16.86 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.06 1.11 8.03 -51.92 -0.42 0.70 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 4.47 8.33 -40.82 -0.34 4.13 16 34 H 0.12 1.02 8.00 -51.93 -0.42 0.60 16 35 H 0.13 1.15 7.85 -51.93 -0.41 0.74 16 36 H 0.44 2.32 8.96 -40.82 -0.37 1.95 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.67 7.31 -51.93 -0.38 1.29 16 46 H 0.03 0.89 7.95 -51.93 -0.41 0.48 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -36.53 390.37 -7.86 -44.39 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.30 Total: 2.98 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -0.96 Total: 18.90 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.74 Total: -64.76 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.28 Total: -24.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.53 -7.86 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.182 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds