Wall clock time and date at job start Tue Mar 31 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.99725 * 2 1 4 4 C 1.54336 * 109.98909 * 238.96663 * 2 1 3 5 5 H 1.09005 * 110.51699 * 336.97721 * 4 2 1 6 6 N 1.46496 * 111.00292 * 100.12656 * 4 2 1 7 7 C 1.34776 * 119.99940 * 200.23597 * 6 4 2 8 8 O 1.21284 * 120.00247 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99875 * 180.02562 * 7 6 4 10 10 N 1.46497 * 109.46956 * 180.02562 * 9 7 6 11 11 C 1.33794 * 124.17593 * 269.69540 * 10 9 7 12 12 O 1.21539 * 123.76976 * 0.03872 * 11 10 9 13 13 N 1.34529 * 112.45702 * 179.86949 * 11 10 9 14 14 C 1.47309 * 106.62157 * 0.37758 * 13 11 10 15 15 C 1.52993 * 110.60205 * 241.25567 * 14 13 11 16 16 C 1.52996 * 110.59781 * 118.30757 * 14 13 11 17 17 C 1.34771 * 124.18047 * 90.00000 * 10 9 7 18 18 O 1.21235 * 127.15685 * 359.97438 * 17 10 9 19 19 C 1.55151 * 103.01975 * 218.66643 * 4 2 1 20 20 C 1.54911 * 101.58164 * 35.30733 * 19 4 2 21 21 N 1.47017 * 109.88029 * 121.09997 * 2 1 3 22 22 C 1.36938 * 125.65154 * 298.39240 * 21 2 1 23 23 H 1.08004 * 119.99614 * 344.50808 * 22 21 2 24 24 C 1.38805 * 120.00288 * 164.51045 * 22 21 2 25 25 N 1.31624 * 120.00031 * 350.15683 * 24 22 21 26 26 Si 1.86803 * 120.00101 * 170.15569 * 24 22 21 27 27 H 1.48498 * 109.46814 * 84.95261 * 26 24 22 28 28 H 1.48505 * 109.47237 * 204.95033 * 26 24 22 29 29 H 1.48496 * 109.47070 * 324.95222 * 26 24 22 30 30 H 1.09010 * 109.46750 * 300.35724 * 1 2 3 31 31 H 1.09001 * 109.46826 * 60.35155 * 1 2 3 32 32 H 1.08999 * 109.47387 * 180.35740 * 1 2 3 33 33 H 0.97003 * 120.00066 * 20.23307 * 6 4 2 34 34 H 1.09005 * 109.46633 * 299.99459 * 9 7 6 35 35 H 1.08997 * 109.47330 * 59.99213 * 9 7 6 36 36 H 0.97003 * 126.68547 * 180.13105 * 13 11 10 37 37 H 1.09001 * 109.47400 * 174.16908 * 15 14 13 38 38 H 1.09002 * 109.47401 * 294.17342 * 15 14 13 39 39 H 1.09003 * 109.47049 * 54.17476 * 15 14 13 40 40 H 1.09003 * 109.47121 * 305.82645 * 16 14 13 41 41 H 1.09001 * 109.47038 * 65.82689 * 16 14 13 42 42 H 1.09002 * 109.47170 * 185.82965 * 16 14 13 43 43 H 1.08994 * 111.00755 * 277.23529 * 19 4 2 44 44 H 1.09005 * 111.03859 * 153.38838 * 19 4 2 45 45 H 1.09006 * 110.36587 * 204.15097 * 20 19 4 46 46 H 1.09000 * 110.37063 * 81.83344 * 20 19 4 47 47 H 0.97004 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1939 -2.2892 7 6 2.5608 -0.2208 -3.5679 8 8 2.3134 -1.3736 -3.8522 9 6 2.9784 0.7477 -4.6443 10 7 3.0077 0.0585 -5.9367 11 6 4.0846 -0.5603 -6.4342 12 8 5.1558 -0.6162 -5.8628 13 7 3.8480 -1.1170 -7.6358 14 6 2.4447 -0.8184 -7.9696 15 6 1.6411 -2.1111 -8.1238 16 6 2.3620 0.0237 -9.2443 17 6 1.9550 -0.0254 -6.7740 18 8 0.8471 0.4372 -6.6061 19 6 3.2863 -1.5183 -0.6916 20 6 2.8098 -1.8826 0.7367 21 7 2.0300 -0.7141 1.1838 22 6 1.8038 -0.3566 2.4862 23 1 1.4373 0.6324 2.7188 24 6 2.0456 -1.2651 3.5074 25 7 2.3041 -2.5236 3.2212 26 14 2.0042 -0.7018 5.2880 27 1 0.6049 -0.7317 5.7841 28 1 2.8416 -1.6086 6.1137 29 1 2.5332 0.6826 5.3816 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5084 -0.8931 32 1 -0.3634 -1.0276 0.0064 33 1 2.6612 1.1158 -2.0619 34 1 2.2658 1.5714 -4.6883 35 1 3.9707 1.1375 -4.4173 36 1 4.4796 -1.6146 -8.1785 37 1 0.5880 -1.8695 -8.2675 38 1 2.0078 -2.6661 -8.9874 39 1 1.7551 -2.7190 -7.2262 40 1 2.9817 0.9135 -9.1328 41 1 2.7179 -0.5631 -10.0911 42 1 1.3276 0.3208 -9.4172 43 1 4.1669 -0.8769 -0.6580 44 1 3.4812 -2.4156 -1.2791 45 1 3.6655 -2.0414 1.3930 46 1 2.1801 -2.7719 0.7113 47 1 2.4727 -3.1586 3.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089020848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:52 Heat of formation + Delta-G solvation = -76.562206 kcal Electronic energy + Delta-G solvation = -30334.269708 eV Core-core repulsion = 26131.758598 eV Total energy + Delta-G solvation = -4202.511110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.67252 -41.02483 -39.79289 -39.25052 -37.69713 -36.32342 -35.63681 -33.92892 -32.50761 -32.10538 -30.95282 -29.57760 -28.44383 -26.45227 -25.86203 -25.24777 -23.40445 -22.29932 -21.77137 -21.61204 -21.06896 -19.10617 -18.85458 -18.61878 -17.71825 -17.41223 -17.14589 -16.80996 -16.72821 -16.42314 -16.16953 -15.75090 -15.52485 -15.32248 -15.31996 -14.94500 -14.41929 -14.23461 -14.05508 -13.93076 -13.65414 -13.38484 -13.24611 -13.21975 -13.12724 -12.89181 -12.82320 -12.59057 -12.57087 -12.30569 -12.14193 -12.00249 -11.95822 -11.71684 -11.66550 -11.56809 -11.24570 -10.79498 -10.67597 -10.50169 -10.11684 -8.85168 -7.87732 -5.25121 0.51716 0.96368 1.45058 1.47322 1.48928 1.57532 1.75794 2.08558 2.20298 2.51570 2.82685 3.33146 3.47266 3.51178 3.68258 3.77927 3.79649 3.85638 3.91335 4.12570 4.17559 4.26067 4.45330 4.47531 4.60075 4.60189 4.61657 4.66286 4.75264 4.78717 4.85717 4.91528 5.01239 5.09650 5.10654 5.20525 5.34184 5.41652 5.53868 5.59603 5.65985 5.77935 5.90852 6.20246 6.25715 6.44567 7.03225 7.06065 7.11835 7.74785 8.42814 9.24916 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002387 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.416125 B =11729.405401 C =12031.313785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.152 3.848 3 H 0.061 0.939 4 C 0.155 3.845 5 H 0.074 0.926 6 N -0.696 5.696 7 C 0.497 3.503 8 O -0.577 6.577 9 C 0.099 3.901 10 N -0.567 5.567 11 C 0.702 3.298 12 O -0.579 6.579 13 N -0.701 5.701 14 C 0.125 3.875 15 C -0.146 4.146 16 C -0.140 4.140 17 C 0.526 3.474 18 O -0.486 6.486 19 C -0.138 4.138 20 C 0.185 3.815 21 N -0.610 5.610 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.976 3.024 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.419 0.581 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.452 0.548 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.030 0.970 46 H -0.003 1.003 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 8.663 -28.988 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.045 3.955 3 H 0.079 0.921 4 C 0.049 3.951 5 H 0.092 0.908 6 N -0.349 5.349 7 C 0.283 3.717 8 O -0.456 6.456 9 C -0.026 4.026 10 N -0.311 5.311 11 C 0.403 3.597 12 O -0.455 6.455 13 N -0.366 5.366 14 C 0.035 3.965 15 C -0.204 4.204 16 C -0.198 4.198 17 C 0.315 3.685 18 O -0.357 6.357 19 C -0.177 4.177 20 C 0.059 3.941 21 N -0.336 5.336 22 C -0.363 4.363 23 H 0.102 0.898 24 C -0.258 4.258 25 N -0.598 5.598 26 Si 0.804 3.196 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.257 0.743 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.299 0.701 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.015 0.985 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.872 8.054 -28.530 29.657 hybrid contribution 0.292 -0.345 1.656 1.717 sum 1.163 7.709 -26.874 27.982 Atomic orbital electron populations 1.22113 0.96745 1.00386 1.01212 1.21230 0.93263 0.95442 0.85548 0.92098 1.21661 0.95854 0.90910 0.86698 0.90825 1.45698 1.68578 1.14691 1.05891 1.21339 0.76763 0.89259 0.84310 1.90706 1.51097 1.20994 1.82766 1.21678 1.08383 0.93959 0.78584 1.45985 1.13500 1.52056 1.19608 1.15980 0.82962 0.78278 0.82474 1.91004 1.25817 1.64505 1.64167 1.45595 1.13708 1.57966 1.19328 1.21654 0.82081 0.97813 0.94908 1.22050 1.00791 0.93455 1.04130 1.22051 1.04907 0.99526 0.93334 1.21453 0.83500 0.78486 0.85080 1.90781 1.19732 1.47442 1.77717 1.23165 0.97974 0.99988 0.96620 1.21029 0.93475 0.89024 0.90591 1.44713 1.58758 1.29148 1.00969 1.19301 1.38495 0.96804 0.81706 0.89804 1.25745 1.02639 0.95209 1.02207 1.70162 1.55079 1.02691 1.31832 0.85140 0.77267 0.77511 0.79638 1.21138 1.22416 1.19190 0.93291 0.91023 0.95230 0.74261 0.82589 0.83322 0.70051 0.89360 0.86908 0.93527 0.91293 0.87258 0.89204 0.90650 0.92098 0.95168 0.98451 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.14 71.98 0.66 -4.71 16 2 C 0.15 5.90 3.49 45.35 0.16 6.06 16 3 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 4 C 0.15 5.57 2.76 46.18 0.13 5.70 16 5 H 0.07 2.98 7.39 -2.38 -0.02 2.96 16 6 N -0.70 -18.64 5.21 -436.90 -2.28 -20.91 16 7 C 0.50 14.20 7.90 87.66 0.69 14.89 16 8 O -0.58 -21.87 16.16 -3.04 -0.05 -21.92 16 9 C 0.10 1.94 6.18 85.63 0.53 2.46 16 10 N -0.57 -12.49 2.09 -777.20 -1.63 -14.12 16 11 C 0.70 16.23 8.62 179.44 1.55 17.78 16 12 O -0.58 -17.67 17.48 -3.84 -0.07 -17.74 16 13 N -0.70 -9.80 5.90 -439.82 -2.60 -12.39 16 14 C 0.13 1.56 1.37 2.98 0.00 1.57 16 15 C -0.15 -1.59 8.99 71.98 0.65 -0.95 16 16 C -0.14 -0.77 8.99 71.98 0.65 -0.13 16 17 C 0.53 10.83 6.98 87.94 0.61 11.45 16 18 O -0.49 -12.19 17.76 -2.89 -0.05 -12.24 16 19 C -0.14 -5.58 6.77 31.98 0.22 -5.37 16 20 C 0.18 9.41 5.36 86.86 0.47 9.87 16 21 N -0.61 -30.71 3.12 -668.23 -2.09 -32.80 16 22 C -0.23 -12.78 9.81 84.03 0.82 -11.96 16 23 H 0.08 4.33 7.85 -2.91 -0.02 4.30 16 24 C -0.06 -3.65 5.38 84.86 0.46 -3.20 16 25 N -0.95 -57.92 10.92 21.65 0.24 -57.69 16 26 Si 0.98 45.55 29.57 68.60 2.03 47.58 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.05 1.86 8.03 -2.38 -0.02 1.85 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 8.03 8.33 -92.71 -0.77 7.26 16 34 H 0.16 2.06 8.00 -2.38 -0.02 2.04 16 35 H 0.15 2.30 7.85 -2.39 -0.02 2.28 16 36 H 0.45 3.75 8.96 -92.71 -0.83 2.92 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.03 1.70 7.31 -2.38 -0.02 1.68 16 46 H 0.00 -0.15 7.95 -2.39 -0.02 -0.16 16 47 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -83.23 390.37 0.50 -82.74 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.60 Total: 16.02 kcal Atomic # 6 Polarization: 35.89 SS G_CDS: 7.59 Total: 43.48 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -8.35 Total: -137.91 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.17 Total: -51.90 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -83.23 0.50 -82.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089020848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.173 kcal (2) G-P(sol) polarization free energy of solvation -83.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds