Wall clock time and date at job start Tue Mar 31 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.64075 * 2 1 4 4 C 1.54324 * 110.86883 * 236.75115 * 2 1 3 5 5 N 1.47029 * 107.26673 * 219.37321 * 4 2 1 6 6 C 1.36943 * 125.64418 * 178.98475 * 5 4 2 7 7 H 1.08001 * 119.99202 * 179.97438 * 6 5 4 8 8 C 1.38808 * 120.00056 * 359.97438 * 6 5 4 9 9 N 1.31617 * 120.00325 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99699 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46754 * 59.99851 * 10 8 6 12 12 H 1.48495 * 109.46875 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47129 * 299.99636 * 10 8 6 14 14 C 1.47418 * 108.70753 * 358.94035 * 5 4 2 15 15 C 1.54919 * 104.83141 * 24.12886 * 14 5 4 16 16 H 1.09000 * 111.03370 * 81.07702 * 15 14 5 17 17 C 1.52999 * 111.00590 * 204.91590 * 15 14 5 18 18 N 1.46497 * 109.46992 * 287.19549 * 17 15 14 19 19 C 1.34777 * 119.99525 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 17 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.47317 * 126.69155 * 89.99612 * 22 21 19 24 24 C 1.51581 * 103.59296 * 179.97438 * 23 22 21 25 25 O 1.21237 * 127.15768 * 179.97438 * 24 23 22 26 26 N 1.34766 * 105.68721 * 0.02562 * 24 23 22 27 27 C 1.46498 * 124.18017 * 179.97438 * 26 24 23 28 28 C 1.33799 * 111.64331 * 359.76552 * 26 24 23 29 29 O 1.21539 * 123.77011 * 180.24939 * 28 26 24 30 30 H 1.09006 * 109.47165 * 296.86146 * 1 2 3 31 31 H 1.08999 * 109.47293 * 56.85863 * 1 2 3 32 32 H 1.08996 * 109.47168 * 176.86143 * 1 2 3 33 33 H 1.09000 * 109.88869 * 338.78633 * 4 2 1 34 34 H 1.08996 * 109.88191 * 99.95990 * 4 2 1 35 35 H 0.97001 * 119.99944 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.36980 * 265.29520 * 14 5 4 37 37 H 1.08999 * 110.37137 * 142.96711 * 14 5 4 38 38 H 1.08995 * 109.46838 * 167.19437 * 17 15 14 39 39 H 1.09001 * 109.46617 * 47.19772 * 17 15 14 40 40 H 0.97000 * 120.00580 * 0.02562 * 18 17 15 41 41 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 42 42 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 43 43 H 1.09001 * 110.60110 * 298.49542 * 23 22 21 44 44 H 1.08999 * 110.59900 * 61.43907 * 23 22 21 45 45 H 1.09003 * 109.46930 * 0.03222 * 27 26 24 46 46 H 1.08996 * 109.46925 * 120.02430 * 27 26 24 47 47 H 1.08998 * 109.47282 * 240.02727 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0797 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 4.0125 -2.3919 -1.4964 7 1 4.8554 -2.9030 -1.0553 8 6 3.7025 -2.5911 -2.8347 9 7 2.6749 -1.9686 -3.3721 10 14 4.7440 -3.7430 -3.8731 11 1 4.7051 -5.1076 -3.2887 12 1 4.2080 -3.7824 -5.2574 13 1 6.1462 -3.2550 -3.8985 14 6 3.4652 -1.2447 0.6913 15 6 2.0789 -0.7934 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2236 0.1112 2.4406 18 7 2.6288 -0.6931 3.5961 19 6 2.8186 -0.1045 4.7936 20 8 2.6536 1.0910 4.9147 21 6 3.2294 -0.9328 5.9836 22 7 3.3633 -0.0674 7.1581 23 6 2.3072 0.2692 8.1285 24 6 3.0070 1.1846 9.1134 25 8 2.5245 1.7132 10.0920 26 7 4.2769 1.2894 8.6745 27 6 5.3127 2.0876 9.3350 28 6 4.4759 0.5710 7.5635 29 8 5.5421 0.5046 6.9838 30 1 -0.3634 0.4644 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3190 -1.4774 -1.5770 34 1 2.3774 -0.1016 -1.9963 35 1 2.4586 -2.1076 -4.3074 36 1 4.1929 -0.4410 0.8029 37 1 3.7993 -2.1364 1.2218 38 1 1.2692 0.5939 2.6506 39 1 2.9797 0.8712 2.2438 40 1 2.7611 -1.6492 3.4992 41 1 2.4717 -1.6924 6.1766 42 1 4.1844 -1.4162 5.7778 43 1 1.4865 0.7912 7.6364 44 1 1.9461 -0.6290 8.6294 45 1 4.8926 2.5686 10.2183 46 1 6.1369 1.4391 9.6318 47 1 5.6791 2.8488 8.6463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102510243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:25 Heat of formation + Delta-G solvation = -70.823889 kcal Electronic energy + Delta-G solvation = -29344.615148 eV Core-core repulsion = 25142.352870 eV Total energy + Delta-G solvation = -4202.262278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.35648 -40.81681 -39.77691 -39.45501 -37.29216 -36.30413 -35.91913 -34.66134 -32.53107 -31.82637 -30.46324 -28.17337 -28.02160 -27.50463 -26.32465 -24.46085 -23.54104 -22.11804 -21.58280 -21.30987 -20.63042 -18.97149 -18.62661 -18.59144 -17.78971 -17.67679 -17.22018 -16.87694 -16.66800 -16.30253 -15.84692 -15.64762 -15.58159 -15.30838 -15.04664 -15.01250 -14.74518 -14.44587 -14.27800 -14.12550 -13.69392 -13.53609 -13.43053 -13.38939 -13.09203 -13.00331 -12.82052 -12.63010 -12.41428 -12.08096 -11.96141 -11.82313 -11.55800 -11.46665 -11.39537 -11.35346 -11.14838 -10.92940 -10.68634 -10.05374 -10.00440 -8.87981 -7.83378 -5.18878 0.54883 0.96304 1.46319 1.49427 1.55559 1.61776 1.80710 1.92335 2.37580 2.50453 3.02177 3.34445 3.63663 3.69035 3.69755 3.88179 3.97038 3.98169 4.19317 4.26942 4.36481 4.39224 4.39742 4.41582 4.48884 4.52272 4.62808 4.69402 4.75935 4.81980 4.85726 4.88320 4.99558 5.11438 5.18611 5.23295 5.37016 5.41175 5.48819 5.52314 5.73156 5.83541 5.99490 6.21932 6.28000 6.57122 6.93341 7.12054 7.25617 7.80155 8.44372 9.26553 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.002094 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.041156 B =13369.495968 C =14214.119435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 H 0.068 0.932 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.241 4.241 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.273 1.273 12 H -0.296 1.296 13 H -0.280 1.280 14 C 0.136 3.864 15 C -0.087 4.087 16 H 0.097 0.903 17 C 0.146 3.854 18 N -0.711 5.711 19 C 0.488 3.512 20 O -0.582 6.582 21 C 0.135 3.865 22 N -0.606 5.606 23 C 0.072 3.928 24 C 0.525 3.475 25 O -0.500 6.500 26 N -0.584 5.584 27 C 0.083 3.917 28 C 0.697 3.303 29 O -0.580 6.580 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.018 0.982 34 H -0.005 1.005 35 H 0.246 0.754 36 H 0.011 0.989 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.418 0.582 41 H 0.177 0.823 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 0.992 26.586 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.087 0.913 4 C 0.066 3.934 5 N -0.356 5.356 6 C -0.370 4.370 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.207 1.207 14 C 0.011 3.989 15 C -0.107 4.107 16 H 0.115 0.885 17 C 0.022 3.978 18 N -0.364 5.364 19 C 0.274 3.726 20 O -0.462 6.462 21 C 0.011 3.989 22 N -0.342 5.342 23 C -0.052 4.052 24 C 0.314 3.686 25 O -0.373 6.373 26 N -0.329 5.329 27 C -0.058 4.058 28 C 0.399 3.601 29 O -0.457 6.457 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.014 0.986 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.194 0.806 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.189 0.811 45 H 0.123 0.877 46 H 0.106 0.894 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.766 1.976 26.621 26.959 hybrid contribution 0.940 -0.452 -1.514 1.839 sum -2.825 1.523 25.107 25.311 Atomic orbital electron populations 1.21629 0.92788 1.01800 1.02138 1.22317 0.97107 0.98374 0.94503 0.91333 1.20980 0.88138 0.91951 0.92283 1.44807 1.32475 1.51361 1.06958 1.19428 1.07786 1.17856 0.91973 0.89898 1.25657 0.99871 1.02332 0.98273 1.70184 1.30340 1.47172 1.12334 0.85168 0.77902 0.78952 0.77410 1.19888 1.22263 1.20672 1.21787 0.95189 0.97511 0.84424 1.22468 0.96816 0.98432 0.92970 0.88465 1.21087 1.00104 0.92989 0.83631 1.45893 1.69168 1.12984 1.08371 1.21803 0.76528 0.88763 0.85508 1.90715 1.52767 1.17284 1.85447 1.21481 1.07761 0.90511 0.79167 1.47128 1.09754 1.50211 1.27150 1.22791 0.91852 1.01991 0.88614 1.21287 0.81684 0.80595 0.84999 1.90812 1.70580 1.48764 1.27117 1.46383 1.14356 1.45738 1.26448 1.21974 0.89904 0.95487 0.98418 1.16038 0.84889 0.78806 0.80347 1.90971 1.27832 1.67112 1.59755 0.90426 0.93065 0.92989 0.96369 0.98641 0.94504 0.97164 0.92855 0.90495 0.93479 0.74498 0.80575 0.85204 0.84698 0.81122 0.87662 0.89417 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.17 71.98 0.66 -2.85 16 2 C -0.10 -3.53 3.01 -9.60 -0.03 -3.56 16 3 H 0.07 2.33 8.04 -2.39 -0.02 2.32 16 4 C 0.19 9.27 4.97 86.73 0.43 9.70 16 5 N -0.63 -31.60 3.39 -691.97 -2.35 -33.95 16 6 C -0.24 -13.35 10.28 84.03 0.86 -12.48 16 7 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 9 N -0.95 -57.17 10.31 21.65 0.22 -56.95 16 10 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.14 5.11 6.65 86.86 0.58 5.69 16 15 C -0.09 -2.52 2.49 -9.40 -0.02 -2.54 16 16 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 17 C 0.15 3.54 5.13 86.38 0.44 3.98 16 18 N -0.71 -12.82 5.50 -463.07 -2.55 -15.37 16 19 C 0.49 9.50 7.90 87.66 0.69 10.19 16 20 O -0.58 -17.06 16.43 -3.04 -0.05 -17.11 16 21 C 0.14 1.38 6.63 85.63 0.57 1.94 16 22 N -0.61 -8.72 2.51 -846.21 -2.12 -10.84 16 23 C 0.07 0.62 7.66 85.76 0.66 1.28 16 24 C 0.52 8.28 8.32 87.94 0.73 9.01 16 25 O -0.50 -10.36 17.51 -2.90 -0.05 -10.41 16 26 N -0.58 -10.57 3.00 -796.65 -2.39 -12.96 16 27 C 0.08 1.17 10.76 127.77 1.37 2.54 16 28 C 0.70 15.13 8.31 179.44 1.49 16.62 16 29 O -0.58 -17.29 17.34 -3.84 -0.07 -17.35 16 30 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.02 0.98 7.02 -2.39 -0.02 0.96 16 34 H 0.00 -0.26 7.51 -2.39 -0.02 -0.28 16 35 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.01 0.42 7.91 -2.39 -0.02 0.40 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.05 1.37 7.96 -2.39 -0.02 1.35 16 40 H 0.42 5.19 8.47 -92.71 -0.79 4.40 16 41 H 0.18 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.13 1.26 8.03 -2.39 -0.02 1.24 16 43 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.10 1.21 7.64 -2.39 -0.02 1.19 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -86.55 391.63 1.78 -84.77 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.20 Total: 6.57 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 8.90 Total: 36.10 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -9.19 Total: -130.08 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.17 Total: -44.87 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -86.55 1.78 -84.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102510243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.950 kcal (2) G-P(sol) polarization free energy of solvation -86.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds