Wall clock time and date at job start Tue Mar 31 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88674 * 2 1 4 4 C 1.54908 * 111.00222 * 236.12262 * 2 1 3 5 5 N 1.47426 * 104.83480 * 204.87534 * 4 2 1 6 6 C 1.36935 * 125.65095 * 204.08509 * 5 4 2 7 7 H 1.08001 * 119.99955 * 11.50619 * 6 5 4 8 8 C 1.38811 * 119.99853 * 191.49692 * 6 5 4 9 9 N 1.31621 * 120.00295 * 206.17070 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 26.17539 * 8 6 5 11 11 H 1.48497 * 109.47088 * 275.72957 * 10 8 6 12 12 H 1.48499 * 109.47011 * 35.73234 * 10 8 6 13 13 H 1.48502 * 109.46918 * 155.73052 * 10 8 6 14 14 C 1.47022 * 108.69923 * 24.35526 * 5 4 2 15 15 C 1.54340 * 107.26661 * 358.58709 * 14 5 4 16 16 H 1.08995 * 110.67079 * 96.52100 * 15 14 5 17 17 C 1.53003 * 110.84892 * 219.67266 * 15 14 5 18 18 C 1.52998 * 109.47361 * 288.69215 * 17 15 14 19 19 N 1.46498 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.34773 * 120.00059 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00089 * 179.97438 * 20 19 18 23 23 N 1.46496 * 109.46880 * 179.97438 * 22 20 19 24 24 C 1.47319 * 126.68822 * 90.00456 * 23 22 20 25 25 C 1.51584 * 103.59264 * 179.97438 * 24 23 22 26 26 O 1.21234 * 127.15332 * 180.02562 * 25 24 23 27 27 N 1.34766 * 105.68377 * 0.02562 * 25 24 23 28 28 C 1.33788 * 111.64803 * 359.76167 * 27 25 24 29 29 O 1.21537 * 123.77711 * 180.24768 * 28 27 25 30 30 H 1.08991 * 109.46861 * 182.42661 * 1 2 3 31 31 H 1.09000 * 109.46110 * 302.42702 * 1 2 3 32 32 H 1.09000 * 109.47063 * 62.42276 * 1 2 3 33 33 H 1.09006 * 110.37290 * 86.03669 * 4 2 1 34 34 H 1.09004 * 110.36903 * 323.71634 * 4 2 1 35 35 H 0.96991 * 120.00246 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.88281 * 118.12776 * 14 5 4 37 37 H 1.08999 * 109.88588 * 239.29734 * 14 5 4 38 38 H 1.09008 * 109.46756 * 48.69158 * 17 15 14 39 39 H 1.08996 * 109.46968 * 168.68933 * 17 15 14 40 40 H 1.09005 * 109.46659 * 300.00288 * 18 17 15 41 41 H 1.09005 * 109.47110 * 59.99851 * 18 17 15 42 42 H 0.97000 * 119.99890 * 0.02562 * 19 18 17 43 43 H 1.08995 * 109.47156 * 300.00426 * 22 20 19 44 44 H 1.09005 * 109.47053 * 60.00244 * 22 20 19 45 45 H 1.08994 * 110.59579 * 298.49021 * 24 23 22 46 46 H 1.09001 * 110.59716 * 61.43291 * 24 23 22 47 47 H 0.96999 * 124.17460 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4642 -1.5650 -1.6087 7 1 4.4008 -1.3365 -2.6623 8 6 5.5967 -2.1861 -1.1001 9 7 6.7545 -2.0455 -1.7102 10 14 5.4774 -3.2217 0.4500 11 1 5.5796 -2.3420 1.6420 12 1 4.1745 -3.9338 0.4705 13 1 6.5835 -4.2124 0.4697 14 6 3.4667 -1.2785 0.6949 15 6 2.0870 -0.8078 1.2018 16 1 1.4465 -1.6616 1.4226 17 6 2.2359 0.0876 2.4335 18 6 2.6670 -0.7606 3.6317 19 7 2.8101 0.0968 4.8108 20 6 3.1839 -0.4367 5.9907 21 8 3.4022 -1.6267 6.0761 22 6 3.3317 0.4454 7.2036 23 7 3.7431 -0.3671 8.3510 24 6 5.1241 -0.6682 8.7664 25 6 4.9450 -1.5351 9.9969 26 8 5.8180 -2.0231 10.6821 27 7 3.6136 -1.6505 10.1706 28 6 2.9336 -0.9798 9.2337 29 8 1.7202 -0.9316 9.1840 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4758 -0.9109 33 1 2.1553 -0.1713 -2.0840 34 1 1.4522 -1.6702 -1.4027 35 1 7.5457 -2.4798 -1.3550 36 1 3.6617 -2.2955 1.0354 37 1 4.2431 -0.6072 1.0619 38 1 2.9894 0.8509 2.2388 39 1 1.2815 0.5665 2.6520 40 1 1.9135 -1.5240 3.8262 41 1 3.6214 -1.2396 3.4131 42 1 2.6351 1.0484 4.7426 43 1 4.0858 1.2078 7.0086 44 1 2.3777 0.9254 7.4221 45 1 5.6488 -1.2166 7.9841 46 1 5.6576 0.2486 9.0172 47 1 3.1994 -2.1543 10.8886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103544108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:00 Heat of formation + Delta-G solvation = -81.213822 kcal Electronic energy + Delta-G solvation = -29321.151341 eV Core-core repulsion = 25118.438522 eV Total energy + Delta-G solvation = -4202.712819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31509 -40.80866 -39.99798 -39.68483 -37.35965 -36.53806 -35.51604 -35.10667 -33.18561 -32.59517 -30.59396 -28.87232 -27.91448 -27.53326 -25.45615 -23.70328 -23.37733 -22.78604 -21.84389 -21.37837 -20.81705 -19.34572 -19.01104 -18.68264 -17.84220 -17.56589 -17.51523 -17.11224 -16.95853 -16.50960 -16.30007 -15.76335 -15.48646 -15.43253 -15.29189 -15.11511 -14.90415 -14.73173 -14.54405 -14.23673 -14.03168 -13.67922 -13.48015 -13.20917 -13.08430 -12.90337 -12.69271 -12.63267 -12.21313 -12.14040 -12.12071 -11.73217 -11.56896 -11.53726 -11.49953 -11.47362 -11.24173 -11.02523 -10.77451 -10.14721 -10.08335 -9.14073 -8.22594 -5.41086 0.51107 1.06689 1.22473 1.31939 1.39183 1.56222 1.82820 1.94616 2.31505 2.34906 2.97822 3.01167 3.35045 3.59597 3.71761 3.73744 3.79538 3.92232 4.16990 4.22989 4.24991 4.31206 4.36935 4.39868 4.52242 4.56923 4.63992 4.72206 4.72977 4.85639 4.89566 4.98546 5.00470 5.10259 5.15172 5.16479 5.21951 5.33055 5.39465 5.44543 5.59397 5.66301 5.87364 6.05917 6.26629 6.53511 6.74030 6.95581 7.23672 7.53313 8.09166 8.97221 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.002580 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.137405 B =10849.225303 C =12449.456296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 H 0.089 0.911 4 C 0.126 3.874 5 N -0.632 5.632 6 C -0.231 4.231 7 H 0.067 0.933 8 C -0.034 4.034 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.311 1.311 14 C 0.116 3.884 15 C -0.085 4.085 16 H 0.081 0.919 17 C -0.102 4.102 18 C 0.119 3.881 19 N -0.708 5.708 20 C 0.480 3.520 21 O -0.588 6.588 22 C 0.137 3.863 23 N -0.606 5.606 24 C 0.068 3.932 25 C 0.532 3.468 26 O -0.503 6.503 27 N -0.674 5.674 28 C 0.703 3.297 29 O -0.580 6.580 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.002 0.998 37 H 0.028 0.972 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.424 0.576 43 H 0.175 0.825 44 H 0.142 0.858 45 H 0.128 0.872 46 H 0.173 0.827 47 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 13.321 22.741 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.358 5.358 6 C -0.360 4.360 7 H 0.085 0.915 8 C -0.229 4.229 9 N -0.597 5.597 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.240 1.240 14 C -0.009 4.009 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.140 4.140 18 C -0.006 4.006 19 N -0.362 5.362 20 C 0.266 3.734 21 O -0.468 6.468 22 C 0.013 3.987 23 N -0.343 5.343 24 C -0.057 4.057 25 C 0.320 3.680 26 O -0.375 6.375 27 N -0.344 5.344 28 C 0.404 3.596 29 O -0.457 6.457 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.019 0.981 37 H 0.046 0.954 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.262 0.738 43 H 0.192 0.808 44 H 0.160 0.840 45 H 0.145 0.855 46 H 0.190 0.810 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -11.062 12.334 22.875 28.244 hybrid contribution 0.403 -1.520 0.367 1.615 sum -10.659 10.814 23.242 27.762 Atomic orbital electron populations 1.21665 0.91838 1.02205 1.03128 1.22307 0.97021 0.98652 0.92286 0.89290 1.21956 0.84389 0.96136 0.97319 1.45022 1.10331 1.78995 1.01459 1.18691 0.93280 1.32046 0.91949 0.91497 1.25326 0.94826 1.02118 1.00633 1.69990 0.98835 1.46432 1.44484 0.86043 0.75074 0.79847 0.81502 1.20234 1.21140 1.24037 1.21857 0.98080 0.96631 0.84288 1.22165 0.94059 0.98870 0.95360 0.90039 1.21688 1.04188 0.97375 0.90756 1.21265 1.00099 0.93946 0.85247 1.45783 1.69081 1.13142 1.08213 1.22045 0.75977 0.89289 0.86044 1.90746 1.51722 1.18590 1.85704 1.21518 1.07362 0.90885 0.78944 1.47121 1.06586 1.53062 1.27505 1.22790 0.84857 1.03103 0.94947 1.21117 0.81550 0.79459 0.85894 1.90863 1.46247 1.49086 1.51329 1.44290 1.09559 1.49852 1.30683 1.15948 0.85052 0.78451 0.80141 1.90998 1.12005 1.66149 1.76537 0.93007 0.90023 0.91698 0.93693 0.95655 0.92915 0.98108 0.95443 0.90119 0.86964 0.92437 0.94829 0.73777 0.80798 0.84025 0.85458 0.81001 0.71925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.30 71.98 0.67 -1.70 16 2 C -0.08 -2.16 3.09 -9.40 -0.03 -2.19 16 3 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 4 C 0.13 4.69 6.70 86.85 0.58 5.27 16 5 N -0.63 -30.51 3.28 -691.94 -2.27 -32.78 16 6 C -0.23 -13.53 10.57 84.03 0.89 -12.64 16 7 H 0.07 4.18 8.06 -2.91 -0.02 4.15 16 8 C -0.03 -2.08 5.43 84.86 0.46 -1.62 16 9 N -0.95 -60.95 13.97 21.65 0.30 -60.65 16 10 Si 0.94 49.89 24.29 68.60 1.67 51.55 16 11 H -0.28 -13.85 6.72 99.48 0.67 -13.18 16 12 H -0.28 -14.90 6.74 99.48 0.67 -14.23 16 13 H -0.31 -16.62 7.11 99.48 0.71 -15.91 16 14 C 0.12 4.87 3.94 86.73 0.34 5.21 16 15 C -0.09 -2.39 2.39 -9.60 -0.02 -2.41 16 16 H 0.08 2.25 8.01 -2.39 -0.02 2.23 16 17 C -0.10 -1.96 4.73 30.59 0.14 -1.81 16 18 C 0.12 2.75 5.56 86.38 0.48 3.23 16 19 N -0.71 -10.78 5.56 -463.05 -2.57 -13.36 16 20 C 0.48 9.03 7.90 87.66 0.69 9.73 16 21 O -0.59 -18.19 16.43 -3.05 -0.05 -18.24 16 22 C 0.14 1.10 6.63 85.63 0.57 1.67 16 23 N -0.61 -7.82 2.51 -846.23 -2.12 -9.94 16 24 C 0.07 0.60 7.66 85.76 0.66 1.26 16 25 C 0.53 7.93 8.81 87.94 0.77 8.71 16 26 O -0.50 -10.73 18.02 -2.89 -0.05 -10.78 16 27 N -0.67 -10.20 5.70 -441.12 -2.52 -12.72 16 28 C 0.70 13.32 8.68 179.44 1.56 14.88 16 29 O -0.58 -15.33 17.71 -3.83 -0.07 -15.39 16 30 H 0.05 0.99 8.11 -2.39 -0.02 0.97 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.03 0.94 8.04 -2.39 -0.02 0.92 16 35 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 36 H 0.00 0.07 3.73 -2.38 -0.01 0.06 16 37 H 0.03 1.21 7.38 -2.39 -0.02 1.20 16 38 H 0.08 1.51 7.94 -2.38 -0.02 1.49 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.03 1.04 7.68 -2.38 -0.02 1.03 16 42 H 0.42 2.51 8.47 -92.71 -0.79 1.72 16 43 H 0.17 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.14 0.70 8.02 -2.38 -0.02 0.68 16 45 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.44 5.30 8.96 -92.71 -0.83 4.47 16 Total: -1.00 -93.80 385.34 -0.60 -94.39 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -0.68 Total: 0.34 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 7.77 Total: 27.57 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -9.18 Total: -129.44 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.17 Total: -44.41 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.67 Total: 51.55 kcal Total: -93.80 -0.60 -94.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103544108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.178 kcal (2) G-P(sol) polarization free energy of solvation -93.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds