Wall clock time and date at job start Tue Mar 31 2020 21:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88674 * 2 1 4 4 C 1.54908 * 111.00222 * 236.12262 * 2 1 3 5 5 N 1.47426 * 104.83480 * 204.87534 * 4 2 1 6 6 C 1.36935 * 125.65095 * 204.08509 * 5 4 2 7 7 H 1.08001 * 119.99955 * 11.50619 * 6 5 4 8 8 C 1.38811 * 119.99853 * 191.49692 * 6 5 4 9 9 N 1.31621 * 120.00295 * 206.17070 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 26.17539 * 8 6 5 11 11 H 1.48497 * 109.47088 * 275.72957 * 10 8 6 12 12 H 1.48499 * 109.47011 * 35.73234 * 10 8 6 13 13 H 1.48502 * 109.46918 * 155.73052 * 10 8 6 14 14 C 1.47022 * 108.69923 * 24.35526 * 5 4 2 15 15 C 1.54340 * 107.26661 * 358.58709 * 14 5 4 16 16 H 1.08995 * 110.67079 * 96.52100 * 15 14 5 17 17 C 1.53003 * 110.84892 * 219.67266 * 15 14 5 18 18 C 1.52998 * 109.47361 * 288.69215 * 17 15 14 19 19 N 1.46498 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.34773 * 120.00059 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00089 * 179.97438 * 20 19 18 23 23 N 1.46496 * 109.46880 * 179.97438 * 22 20 19 24 24 C 1.34761 * 124.18237 * 269.72283 * 23 22 20 25 25 O 1.21240 * 127.15450 * 0.02562 * 24 23 22 26 26 C 1.51587 * 105.69120 * 179.97438 * 24 23 22 27 27 N 1.47315 * 103.58705 * 0.32206 * 26 24 23 28 28 C 1.33792 * 124.17532 * 90.03092 * 23 22 20 29 29 O 1.21536 * 123.77183 * 359.95735 * 28 23 22 30 30 H 1.08991 * 109.46861 * 182.42661 * 1 2 3 31 31 H 1.09000 * 109.46110 * 302.42702 * 1 2 3 32 32 H 1.09000 * 109.47063 * 62.42276 * 1 2 3 33 33 H 1.09006 * 110.37290 * 86.03669 * 4 2 1 34 34 H 1.09004 * 110.36903 * 323.71634 * 4 2 1 35 35 H 0.96991 * 120.00246 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.88281 * 118.12776 * 14 5 4 37 37 H 1.08999 * 109.88588 * 239.29734 * 14 5 4 38 38 H 1.09008 * 109.46756 * 48.69158 * 17 15 14 39 39 H 1.08996 * 109.46968 * 168.68933 * 17 15 14 40 40 H 1.09005 * 109.46659 * 300.00288 * 18 17 15 41 41 H 1.09005 * 109.47110 * 59.99851 * 18 17 15 42 42 H 0.97000 * 119.99890 * 0.02562 * 19 18 17 43 43 H 1.08995 * 109.47156 * 300.00426 * 22 20 19 44 44 H 1.09005 * 109.47053 * 60.00244 * 22 20 19 45 45 H 1.08994 * 110.76716 * 241.71926 * 26 24 23 46 46 H 1.08997 * 110.56380 * 118.82621 * 26 24 23 47 47 H 0.97002 * 126.69031 * 179.83582 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4642 -1.5650 -1.6087 7 1 4.4008 -1.3365 -2.6623 8 6 5.5967 -2.1861 -1.1001 9 7 6.7545 -2.0455 -1.7102 10 14 5.4774 -3.2217 0.4500 11 1 5.5796 -2.3420 1.6420 12 1 4.1745 -3.9338 0.4705 13 1 6.5835 -4.2124 0.4697 14 6 3.4667 -1.2785 0.6949 15 6 2.0870 -0.8078 1.2018 16 1 1.4465 -1.6616 1.4226 17 6 2.2359 0.0876 2.4335 18 6 2.6670 -0.7606 3.6317 19 7 2.8101 0.0968 4.8108 20 6 3.1839 -0.4367 5.9907 21 8 3.4022 -1.6267 6.0761 22 6 3.3317 0.4454 7.2036 23 7 3.7431 -0.3671 8.3510 24 6 2.8858 -0.9590 9.2059 25 8 1.6745 -0.9215 9.1715 26 6 3.7510 -1.6827 10.2186 27 7 5.1243 -1.3800 9.7798 28 6 5.0165 -0.6082 8.6832 29 8 5.9694 -0.1770 8.0643 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4758 -0.9109 33 1 2.1553 -0.1713 -2.0840 34 1 1.4522 -1.6702 -1.4027 35 1 7.5457 -2.4798 -1.3550 36 1 3.6617 -2.2955 1.0354 37 1 4.2431 -0.6072 1.0619 38 1 2.9894 0.8509 2.2388 39 1 1.2815 0.5665 2.6520 40 1 1.9135 -1.5240 3.8262 41 1 3.6214 -1.2396 3.4131 42 1 2.6351 1.0484 4.7426 43 1 4.0858 1.2078 7.0086 44 1 2.3777 0.9254 7.4221 45 1 3.5664 -2.7564 10.1876 46 1 3.5742 -1.2931 11.2211 47 1 5.9461 -1.6798 10.1990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103704092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:05 Heat of formation + Delta-G solvation = -46.163682 kcal Electronic energy + Delta-G solvation = -29596.399602 eV Core-core repulsion = 25395.206671 eV Total energy + Delta-G solvation = -4201.192931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74660 -39.77902 -38.94866 -38.51833 -36.46460 -35.52888 -34.92839 -33.33898 -31.74897 -30.97859 -29.37382 -28.03427 -26.95810 -26.09578 -24.11247 -23.32135 -22.16305 -21.65007 -20.59924 -20.10601 -19.58577 -18.47805 -18.09268 -17.22811 -16.96563 -16.68944 -16.40813 -15.87814 -15.67883 -15.46044 -15.33886 -14.63324 -14.56049 -14.39201 -14.24559 -14.15665 -13.60249 -13.51753 -13.21463 -13.14252 -12.71998 -12.55949 -12.19879 -11.95149 -11.73520 -11.43503 -11.40711 -11.26909 -10.93572 -10.86290 -10.78716 -10.69131 -10.41390 -10.18781 -10.10279 -9.96618 -9.78870 -9.72226 -9.23987 -9.15467 -8.59366 -7.05532 -5.90272 -3.14229 1.23028 1.63795 2.35761 2.53539 2.71067 3.06553 3.42381 3.54893 3.55451 3.56910 4.27606 4.38885 4.51541 4.60717 4.63759 4.71700 4.74843 4.93298 4.96708 4.97347 5.11336 5.16679 5.28533 5.39769 5.48888 5.54060 5.76099 5.81654 5.86456 5.96167 6.07192 6.11158 6.14786 6.24086 6.30533 6.32406 6.41915 6.52361 6.58078 6.66750 6.83412 6.87543 6.91286 7.24100 7.71026 7.72439 7.96287 8.34640 8.88128 9.75100 10.22920 11.25787 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.002755 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.376793 B =10161.169259 C =11636.626180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.078 0.922 4 C 0.139 3.861 5 N -0.611 5.611 6 C -0.242 4.242 7 H 0.094 0.906 8 C 0.020 3.980 9 N -0.906 5.906 10 Si 0.883 3.117 11 H -0.286 1.286 12 H -0.281 1.281 13 H -0.304 1.304 14 C 0.121 3.879 15 C -0.093 4.093 16 H 0.077 0.923 17 C -0.117 4.117 18 C 0.115 3.885 19 N -0.722 5.722 20 C 0.498 3.502 21 O -0.528 6.528 22 C 0.101 3.899 23 N -0.562 5.562 24 C 0.526 3.474 25 O -0.467 6.467 26 C 0.066 3.934 27 N -0.727 5.727 28 C 0.706 3.294 29 O -0.536 6.536 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.026 0.974 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.402 0.598 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.458 7.326 25.354 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.338 5.338 6 C -0.369 4.369 7 H 0.112 0.888 8 C -0.178 4.178 9 N -0.550 5.550 10 Si 0.715 3.285 11 H -0.213 1.213 12 H -0.208 1.208 13 H -0.233 1.233 14 C -0.003 4.003 15 C -0.113 4.113 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.008 4.008 19 N -0.374 5.374 20 C 0.281 3.719 21 O -0.404 6.404 22 C -0.025 4.025 23 N -0.308 5.308 24 C 0.314 3.686 25 O -0.337 6.337 26 C -0.062 4.062 27 N -0.393 5.393 28 C 0.407 3.593 29 O -0.408 6.408 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.236 0.764 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -11.237 6.689 24.889 28.116 hybrid contribution 0.367 -0.560 0.967 1.177 sum -10.869 6.129 25.857 28.710 Atomic orbital electron populations 1.21690 0.95077 1.01601 1.01127 1.22368 0.94633 0.99399 0.95594 0.90325 1.21639 0.86531 0.95472 0.95024 1.44812 1.09318 1.79373 1.00268 1.18656 0.92172 1.33826 0.92254 0.88791 1.24788 0.94932 1.00512 0.97575 1.69894 0.98155 1.44616 1.42289 0.87029 0.75811 0.81500 0.84180 1.21311 1.20850 1.23267 1.21752 0.94482 0.98167 0.85947 1.22166 0.97938 0.97723 0.93438 0.90498 1.21782 1.01808 0.98487 0.93400 1.21546 1.02559 0.93333 0.83352 1.45899 1.69832 1.12341 1.09329 1.20706 0.77292 0.89175 0.84697 1.90754 1.49064 1.15761 1.84829 1.21461 1.04776 0.93116 0.83139 1.45798 1.08298 1.49248 1.27439 1.20904 0.87526 0.78002 0.82181 1.90834 1.11190 1.58607 1.73030 1.22446 0.81025 1.03420 0.99282 1.45349 1.08841 1.54873 1.30211 1.15773 0.82668 0.79547 0.81357 1.91057 1.38590 1.55458 1.55698 0.92746 0.93058 0.92693 0.93394 0.95860 0.92781 0.95676 0.94136 0.90704 0.91134 0.91252 0.90835 0.76381 0.85308 0.85552 0.85655 0.85722 0.71253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.30 37.16 0.35 -1.28 16 2 C -0.10 -1.53 3.09 -88.47 -0.27 -1.81 16 3 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 4 C 0.14 2.73 6.70 -2.53 -0.02 2.72 16 5 N -0.61 -15.14 3.28 -170.06 -0.56 -15.70 16 6 C -0.24 -7.07 10.57 -15.06 -0.16 -7.23 16 7 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 8 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 9 N -0.91 -28.77 13.97 55.49 0.78 -28.00 16 10 Si 0.88 24.02 24.29 -169.99 -4.13 19.89 16 11 H -0.29 -7.61 6.72 56.52 0.38 -7.23 16 12 H -0.28 -7.57 6.74 56.52 0.38 -7.19 16 13 H -0.30 -8.38 7.11 56.52 0.40 -7.98 16 14 C 0.12 2.69 3.94 -3.06 -0.01 2.68 16 15 C -0.09 -1.50 2.39 -88.78 -0.21 -1.72 16 16 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 17 C -0.12 -1.46 4.73 -26.73 -0.13 -1.59 16 18 C 0.12 1.60 5.56 -4.04 -0.02 1.57 16 19 N -0.72 -8.00 5.56 -60.29 -0.33 -8.33 16 20 C 0.50 6.46 7.90 -10.99 -0.09 6.38 16 21 O -0.53 -9.39 16.43 5.55 0.09 -9.29 16 22 C 0.10 0.90 6.18 -5.19 -0.03 0.87 16 23 N -0.56 -5.65 2.09 -122.02 -0.26 -5.91 16 24 C 0.53 4.70 8.31 -10.56 -0.09 4.61 16 25 O -0.47 -5.37 17.75 5.59 0.10 -5.27 16 26 C 0.07 0.29 7.98 -4.31 -0.03 0.26 16 27 N -0.73 -4.61 6.58 -65.73 -0.43 -5.04 16 28 C 0.71 7.72 8.62 -88.02 -0.76 6.96 16 29 O -0.54 -7.99 17.48 5.33 0.09 -7.90 16 30 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 36 H 0.03 0.63 3.73 -51.93 -0.19 0.43 16 37 H 0.04 0.95 7.38 -51.93 -0.38 0.57 16 38 H 0.07 0.95 7.94 -51.92 -0.41 0.54 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 42 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 43 H 0.13 0.93 7.86 -51.93 -0.41 0.53 16 44 H 0.13 0.75 8.00 -51.93 -0.42 0.33 16 45 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 47 H 0.44 1.72 8.96 -40.82 -0.37 1.35 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -41.30 384.31 -7.59 -48.89 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.16 Total: -2.08 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.57 Total: 12.95 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.81 Total: -62.98 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.28 Total: -22.46 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.13 Total: 19.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.30 -7.59 -48.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103704092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.726 kcal (2) G-P(sol) polarization free energy of solvation -41.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds