Wall clock time and date at job start Tue Mar 31 2020 21:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 N 1.46505 * 109.46903 * 180.02562 * 8 6 5 10 10 C 1.34767 * 124.17600 * 90.00087 * 9 8 6 11 11 O 1.21232 * 127.15949 * 359.97438 * 10 9 8 12 12 C 1.51588 * 105.68290 * 179.97438 * 10 9 8 13 13 N 1.47310 * 103.59120 * 359.97438 * 12 10 9 14 14 C 1.33788 * 124.17636 * 269.69681 * 9 8 6 15 15 O 1.21541 * 123.77222 * 0.04005 * 14 9 8 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09003 * 110.36373 * 323.74675 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09004 * 110.59744 * 118.52750 * 12 10 9 38 38 H 1.09001 * 110.59767 * 241.46928 * 12 10 9 39 39 H 0.96999 * 126.68821 * 180.02562 * 13 12 10 40 40 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 41 41 H 1.08992 * 110.00980 * 118.42900 * 16 5 4 42 42 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 43 43 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 44 44 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 45 45 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 46 46 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 47 47 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 7 5.5105 -1.8777 -3.7526 10 6 5.8116 -3.1420 -4.1091 11 8 5.1297 -4.1309 -3.9461 12 6 7.1805 -3.0702 -4.7563 13 7 7.5236 -1.6395 -4.6829 14 6 6.4863 -1.0252 -4.0859 15 8 6.4420 0.1701 -3.8704 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.2088 1.6840 7.0016 26 14 4.1923 -0.2999 8.6682 27 1 5.6711 -0.1689 8.7017 28 1 3.6038 0.4379 9.8147 29 1 3.8203 -1.7346 8.7594 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4520 -1.6704 -1.4024 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 7.9010 -3.6669 -4.1968 38 1 7.1318 -3.3998 -5.7941 39 1 8.3372 -1.2213 -5.0054 40 1 4.2426 -0.5996 1.0600 41 1 3.6662 -2.2882 1.0424 42 1 1.2618 0.4969 2.7051 43 1 2.9222 0.9032 2.2091 44 1 3.7579 -1.1454 3.3287 45 1 2.0974 -1.5517 3.8246 46 1 2.6835 1.0589 4.7294 47 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104987034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:48 Heat of formation + Delta-G solvation = -61.976264 kcal Electronic energy + Delta-G solvation = -29384.655621 eV Core-core repulsion = 25182.777005 eV Total energy + Delta-G solvation = -4201.878616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75874 -40.29097 -38.95772 -38.19897 -36.47626 -35.15715 -35.02850 -33.37848 -32.07828 -30.44173 -29.33113 -28.04633 -26.75552 -26.56724 -24.19619 -23.32853 -22.53635 -21.53582 -20.73692 -20.07219 -19.53006 -18.44006 -17.99013 -17.29187 -17.05740 -16.73968 -16.44766 -15.96177 -15.70231 -15.34527 -14.73884 -14.66820 -14.55365 -14.43091 -14.37732 -13.81596 -13.76148 -13.51218 -13.29007 -13.09451 -12.76275 -12.74628 -12.57701 -12.23093 -11.77113 -11.47767 -11.41659 -11.16362 -11.02843 -10.82399 -10.81967 -10.69742 -10.61352 -10.44251 -10.27905 -9.99349 -9.94871 -9.78495 -9.63668 -8.83456 -8.81416 -6.88396 -5.73059 -3.01565 1.22835 1.61882 2.34695 2.48770 2.69958 2.90214 3.46683 3.51519 3.53188 3.54483 4.08002 4.25348 4.29437 4.50592 4.52495 4.62614 4.65100 4.68135 4.71079 4.93704 5.07981 5.15251 5.18006 5.22394 5.31866 5.47685 5.53393 5.60880 5.71444 5.77037 5.87509 5.99909 6.00630 6.02868 6.14720 6.29275 6.30719 6.39124 6.40524 6.57133 6.86551 6.90600 6.91776 7.27076 7.68801 7.73678 7.88868 8.46168 9.57070 10.15431 10.49896 11.50009 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002244 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.293085 B =12472.541569 C =13488.932159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.613 5.613 6 C 0.514 3.486 7 O -0.529 6.529 8 C 0.106 3.894 9 N -0.563 5.563 10 C 0.526 3.474 11 O -0.466 6.466 12 C 0.066 3.934 13 N -0.727 5.727 14 C 0.707 3.293 15 O -0.537 6.537 16 C 0.112 3.888 17 C -0.089 4.089 18 H 0.087 0.913 19 C -0.115 4.115 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.443 0.557 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.019 0.981 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -7.645 -31.186 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.348 5.348 6 C 0.300 3.700 7 O -0.405 6.405 8 C -0.019 4.019 9 N -0.309 5.309 10 C 0.313 3.687 11 O -0.335 6.335 12 C -0.061 4.061 13 N -0.392 5.392 14 C 0.408 3.592 15 O -0.410 6.410 16 C -0.010 4.010 17 C -0.108 4.108 18 H 0.106 0.894 19 C -0.153 4.153 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.287 0.713 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.438 -7.882 -30.610 31.611 hybrid contribution 0.669 0.119 0.872 1.105 sum 1.107 -7.763 -29.738 30.754 Atomic orbital electron populations 1.21700 0.93433 1.02145 1.02520 1.22435 0.96425 0.99644 0.93525 0.89260 1.22562 0.83115 0.98549 0.98313 1.48434 1.12139 1.66541 1.07657 1.20301 0.83448 0.77872 0.88342 1.90753 1.25709 1.46901 1.77095 1.21424 0.85115 1.05167 0.90237 1.45831 1.19500 1.10281 1.55254 1.20917 0.88243 0.82305 0.77213 1.90837 1.56034 1.33533 1.53092 1.22455 0.94980 0.84388 1.04322 1.45342 1.21060 1.08076 1.64750 1.15759 0.80354 0.84947 0.78186 1.91044 1.79527 1.11868 1.58575 1.22157 0.98581 1.02300 0.77951 1.22291 0.94875 0.98861 0.94781 0.89437 1.21731 1.01965 0.98098 0.93522 1.20685 0.96970 0.93276 0.86724 1.42363 1.78553 1.09620 1.07278 1.19240 1.34832 0.94467 0.88368 0.91215 1.24743 1.02396 0.95770 0.98229 1.69659 1.54503 1.04557 1.29642 0.86183 0.78552 0.77952 0.83490 1.21715 1.21768 1.20765 0.91484 0.92438 0.92339 0.90541 0.90727 0.85718 0.85511 0.85605 0.85708 0.71263 0.90551 0.91093 0.91217 0.91648 0.96348 0.96432 0.78326 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.31 37.16 0.35 -0.72 16 2 C -0.10 -0.93 3.09 -88.47 -0.27 -1.20 16 3 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 4 C 0.10 0.79 6.16 -2.52 -0.02 0.77 16 5 N -0.61 -7.30 3.33 -170.52 -0.57 -7.87 16 6 C 0.51 6.86 7.92 -10.99 -0.09 6.77 16 7 O -0.53 -9.36 16.76 5.56 0.09 -9.26 16 8 C 0.11 0.98 5.19 -5.19 -0.03 0.95 16 9 N -0.56 -5.57 2.09 -122.02 -0.26 -5.83 16 10 C 0.53 4.64 8.32 -10.55 -0.09 4.55 16 11 O -0.47 -5.38 17.76 5.60 0.10 -5.28 16 12 C 0.07 0.28 7.97 -4.31 -0.03 0.24 16 13 N -0.73 -4.24 6.58 -65.73 -0.43 -4.67 16 14 C 0.71 7.36 8.62 -88.02 -0.76 6.60 16 15 O -0.54 -7.60 17.48 5.33 0.09 -7.50 16 16 C 0.11 1.53 5.61 -3.06 -0.02 1.52 16 17 C -0.09 -1.06 2.45 -88.79 -0.22 -1.28 16 18 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 19 C -0.12 -1.78 4.71 -26.74 -0.13 -1.91 16 20 C 0.15 3.06 6.11 -4.04 -0.02 3.04 16 21 N -0.73 -19.14 5.60 -59.91 -0.34 -19.47 16 22 C -0.24 -6.87 9.99 -15.06 -0.15 -7.03 16 23 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 25 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 26 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.08 0.45 7.48 -51.93 -0.39 0.06 16 34 H 0.07 0.50 7.98 -51.93 -0.41 0.08 16 35 H 0.12 0.84 8.00 -51.93 -0.42 0.42 16 36 H 0.13 0.96 7.56 -51.93 -0.39 0.57 16 37 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.44 1.46 8.96 -40.82 -0.37 1.09 16 40 H 0.08 1.22 7.76 -51.93 -0.40 0.82 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 44 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 47 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -39.85 392.74 -8.52 -48.37 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.26 Total: 4.06 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -1.57 Total: 11.75 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.87 Total: -66.01 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.29 Total: -22.05 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.85 -8.52 -48.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104987034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.607 kcal (2) G-P(sol) polarization free energy of solvation -39.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds