Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 N 1.46505 * 109.46903 * 180.02562 * 8 6 5 10 10 C 1.34767 * 124.17600 * 90.00087 * 9 8 6 11 11 O 1.21232 * 127.15949 * 359.97438 * 10 9 8 12 12 C 1.51588 * 105.68290 * 179.97438 * 10 9 8 13 13 N 1.47310 * 103.59120 * 359.97438 * 12 10 9 14 14 C 1.33788 * 124.17636 * 269.69681 * 9 8 6 15 15 O 1.21541 * 123.77222 * 0.04005 * 14 9 8 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09003 * 110.36373 * 323.74675 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09004 * 110.59744 * 118.52750 * 12 10 9 38 38 H 1.09001 * 110.59767 * 241.46928 * 12 10 9 39 39 H 0.96999 * 126.68821 * 180.02562 * 13 12 10 40 40 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 41 41 H 1.08992 * 110.00980 * 118.42900 * 16 5 4 42 42 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 43 43 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 44 44 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 45 45 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 46 46 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 47 47 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 7 5.5105 -1.8777 -3.7526 10 6 5.8116 -3.1420 -4.1091 11 8 5.1297 -4.1309 -3.9461 12 6 7.1805 -3.0702 -4.7563 13 7 7.5236 -1.6395 -4.6829 14 6 6.4863 -1.0252 -4.0859 15 8 6.4420 0.1701 -3.8704 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.2088 1.6840 7.0016 26 14 4.1923 -0.2999 8.6682 27 1 5.6711 -0.1689 8.7017 28 1 3.6038 0.4379 9.8147 29 1 3.8203 -1.7346 8.7594 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4520 -1.6704 -1.4024 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 7.9010 -3.6669 -4.1968 38 1 7.1318 -3.3998 -5.7941 39 1 8.3372 -1.2213 -5.0054 40 1 4.2426 -0.5996 1.0600 41 1 3.6662 -2.2882 1.0424 42 1 1.2618 0.4969 2.7051 43 1 2.9222 0.9032 2.2091 44 1 3.7579 -1.1454 3.3287 45 1 2.0974 -1.5517 3.8246 46 1 2.6835 1.0589 4.7294 47 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104987034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = -93.336650 kcal Electronic energy + Delta-G solvation = -29386.015509 eV Core-core repulsion = 25182.777005 eV Total energy + Delta-G solvation = -4203.238504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43618 -41.26050 -39.72029 -39.24473 -37.24740 -36.91002 -35.71918 -34.72920 -33.49703 -31.91524 -30.35555 -28.71570 -28.00959 -27.27519 -25.87216 -24.11919 -23.95331 -22.46956 -21.84149 -21.06006 -20.43553 -19.20122 -19.11326 -18.76380 -18.02256 -17.59036 -17.30143 -16.84516 -16.65477 -16.36842 -16.22161 -15.81886 -15.50027 -15.38266 -15.32743 -15.07735 -15.00326 -14.62272 -14.35560 -14.20935 -13.87027 -13.68227 -13.40761 -13.28507 -13.07585 -12.88771 -12.65106 -12.52509 -12.32017 -12.22613 -12.12882 -11.93342 -11.75265 -11.67685 -11.56263 -11.42886 -11.21544 -10.96120 -10.80331 -10.44713 -9.81474 -9.04127 -7.98898 -5.28301 0.57139 0.95737 1.35835 1.44009 1.46563 1.54956 1.69455 2.05584 2.25400 2.52961 3.00166 3.23889 3.34396 3.48307 3.59461 3.66025 3.70985 4.04169 4.10325 4.19224 4.23997 4.27419 4.29772 4.31697 4.40272 4.48621 4.56118 4.62784 4.64113 4.69890 4.75974 4.86655 4.90388 5.01729 5.12080 5.18288 5.27849 5.32870 5.41653 5.45797 5.54970 5.78791 5.92729 6.23982 6.27252 6.35806 6.87979 7.04102 7.29657 8.05601 8.29110 9.24730 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.002244 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.293085 B =12472.541569 C =13488.932159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.504 3.496 7 O -0.585 6.585 8 C 0.108 3.892 9 N -0.570 5.570 10 C 0.517 3.483 11 O -0.499 6.499 12 C 0.076 3.924 13 N -0.708 5.708 14 C 0.698 3.302 15 O -0.585 6.585 16 C 0.112 3.888 17 C -0.078 4.078 18 H 0.101 0.899 19 C -0.100 4.100 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.975 3.025 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.455 0.545 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.009 0.991 45 H 0.023 0.977 46 H 0.374 0.626 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -8.911 -33.525 34.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.025 4.025 5 N -0.345 5.345 6 C 0.292 3.708 7 O -0.465 6.465 8 C -0.017 4.017 9 N -0.315 5.315 10 C 0.307 3.693 11 O -0.370 6.370 12 C -0.050 4.050 13 N -0.373 5.373 14 C 0.398 3.602 15 O -0.461 6.461 16 C -0.011 4.011 17 C -0.098 4.098 18 H 0.119 0.881 19 C -0.138 4.138 20 C 0.023 3.977 21 N -0.391 5.391 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.804 3.196 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.194 1.194 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.188 0.812 39 H 0.302 0.698 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.041 0.959 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.295 -9.191 -33.012 34.269 hybrid contribution 0.919 0.468 1.569 1.878 sum 0.623 -8.723 -31.443 32.637 Atomic orbital electron populations 1.21682 0.91564 1.03202 1.02884 1.22414 0.97795 0.98890 0.92232 0.89968 1.22879 0.81057 0.99903 0.98694 1.48546 1.13548 1.65754 1.06654 1.21142 0.82751 0.76755 0.90143 1.90711 1.27917 1.49554 1.78348 1.21579 0.86015 1.07077 0.87028 1.46010 1.19671 1.10877 1.54976 1.21675 0.89581 0.81365 0.76656 1.90818 1.57419 1.34213 1.54585 1.22739 0.92331 0.83270 1.06688 1.45345 1.20253 1.08721 1.63012 1.16020 0.81238 0.84529 0.78378 1.91004 1.80591 1.13808 1.60740 1.21979 0.98714 1.00603 0.79762 1.22188 0.94202 0.99066 0.94329 0.88120 1.21564 1.01436 0.97640 0.93201 1.20858 0.96790 0.93445 0.86611 1.42603 1.78400 1.09824 1.08276 1.19635 1.34238 0.94702 0.89554 0.90961 1.25608 1.03305 0.96234 1.01714 1.69812 1.55966 1.05795 1.30402 0.85118 0.77645 0.77781 0.79096 1.21510 1.21683 1.19370 0.92658 0.90340 0.91190 0.87434 0.88163 0.82829 0.83711 0.83427 0.81244 0.69765 0.93846 0.92594 0.90567 0.92875 0.97304 0.95862 0.79391 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.31 71.98 0.67 -0.98 16 2 C -0.09 -1.54 3.09 -9.40 -0.03 -1.57 16 3 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 4 C 0.10 1.28 6.16 86.86 0.54 1.82 16 5 N -0.61 -14.29 3.33 -811.79 -2.70 -17.00 16 6 C 0.50 13.50 7.92 87.66 0.69 14.19 16 7 O -0.59 -21.65 16.76 -3.03 -0.05 -21.70 16 8 C 0.11 1.86 5.19 85.63 0.44 2.31 16 9 N -0.57 -10.73 2.09 -777.20 -1.63 -12.36 16 10 C 0.52 8.35 8.32 87.94 0.73 9.08 16 11 O -0.50 -10.98 17.76 -2.88 -0.05 -11.04 16 12 C 0.08 0.41 7.97 85.76 0.68 1.09 16 13 N -0.71 -6.86 6.58 -480.30 -3.16 -10.02 16 14 C 0.70 14.02 8.62 179.44 1.55 15.57 16 15 O -0.58 -16.67 17.48 -3.84 -0.07 -16.74 16 16 C 0.11 3.19 5.61 86.73 0.49 3.68 16 17 C -0.08 -1.84 2.45 -9.61 -0.02 -1.86 16 18 H 0.10 2.14 8.04 -2.39 -0.02 2.13 16 19 C -0.10 -3.15 4.71 30.59 0.14 -3.01 16 20 C 0.15 6.22 6.11 86.38 0.53 6.74 16 21 N -0.75 -40.05 5.60 -343.45 -1.92 -41.98 16 22 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 23 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 24 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 25 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 26 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.72 8.07 -2.39 -0.02 0.70 16 33 H 0.11 0.85 7.48 -2.39 -0.02 0.83 16 34 H 0.10 0.92 7.98 -2.39 -0.02 0.90 16 35 H 0.15 1.69 8.00 -2.39 -0.02 1.67 16 36 H 0.15 1.94 7.56 -2.39 -0.02 1.92 16 37 H 0.15 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.17 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.46 2.06 8.96 -92.71 -0.83 1.22 16 40 H 0.04 1.50 7.76 -2.39 -0.02 1.48 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 44 H 0.01 0.39 7.49 -2.39 -0.02 0.37 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 47 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -91.30 392.74 -0.09 -91.39 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.54 Total: 21.29 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 7.72 Total: 29.15 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -9.13 Total: -142.10 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.17 Total: -49.47 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -91.30 -0.09 -91.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104987034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.944 kcal (2) G-P(sol) polarization free energy of solvation -91.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds