Wall clock time and date at job start Tue Mar 31 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 110.65738 * 2 1 4 4 C 1.54600 * 110.98954 * 236.84981 * 2 1 3 5 5 N 1.48120 * 103.42427 * 204.37546 * 4 2 1 6 6 C 1.34777 * 127.03057 * 219.28762 * 5 4 2 7 7 O 1.21287 * 119.99762 * 179.68085 * 6 5 4 8 8 C 1.50695 * 120.00304 * 359.67996 * 6 5 4 9 9 N 1.46497 * 109.47265 * 180.02562 * 8 6 5 10 10 C 1.46415 * 119.53437 * 269.97763 * 9 8 6 11 11 C 1.53364 * 109.41467 * 144.00620 * 10 9 8 12 12 C 1.50807 * 109.00705 * 47.02132 * 11 10 9 13 13 O 1.21233 * 120.01980 * 145.62560 * 12 11 10 14 14 N 1.34569 * 119.96446 * 325.34354 * 12 11 10 15 15 C 1.34286 * 119.53702 * 89.99804 * 9 8 6 16 16 O 1.21539 * 119.20750 * 5.69273 * 15 9 8 17 17 C 1.47479 * 105.93241 * 39.01961 * 5 4 2 18 18 C 1.54007 * 107.08772 * 334.78065 * 17 5 4 19 19 H 1.09004 * 110.32389 * 120.19506 * 18 17 5 20 20 C 1.53000 * 110.33103 * 242.31080 * 18 17 5 21 21 N 1.46498 * 109.46839 * 293.54897 * 20 18 17 22 22 C 1.36940 * 119.99454 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00361 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99578 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47113 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46929 * 119.99882 * 26 24 22 29 29 H 1.48495 * 109.47540 * 240.00281 * 26 24 22 30 30 H 1.08998 * 109.47512 * 296.80047 * 1 2 3 31 31 H 1.09005 * 109.47636 * 56.80749 * 1 2 3 32 32 H 1.09008 * 109.47133 * 176.80235 * 1 2 3 33 33 H 1.08997 * 110.61693 * 85.85697 * 4 2 1 34 34 H 1.08996 * 110.54608 * 322.85316 * 4 2 1 35 35 H 1.09006 * 109.47300 * 59.99935 * 8 6 5 36 36 H 1.09000 * 109.47535 * 300.00138 * 8 6 5 37 37 H 1.08999 * 109.46298 * 264.17746 * 10 9 8 38 38 H 1.08996 * 109.46501 * 24.16012 * 10 9 8 39 39 H 1.08997 * 109.71839 * 287.09225 * 11 10 9 40 40 H 1.08996 * 109.49190 * 166.80558 * 11 10 9 41 41 H 0.96998 * 119.50582 * 184.71384 * 14 12 11 42 42 H 1.08999 * 109.91549 * 94.14502 * 17 5 4 43 43 H 1.08998 * 109.91641 * 215.42246 * 17 5 4 44 44 H 1.09001 * 109.46856 * 53.54604 * 20 18 17 45 45 H 1.08995 * 109.46965 * 173.54568 * 20 18 17 46 46 H 0.96997 * 120.00603 * 359.97438 * 21 20 18 47 47 H 0.97000 * 119.99867 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2057 -0.7586 6 6 4.5592 -1.2404 -1.4967 7 8 5.6027 -1.5999 -0.9936 8 6 4.5232 -0.8326 -2.9469 9 7 5.8643 -0.9580 -3.5230 10 6 6.7799 0.1836 -3.4753 11 6 8.2122 -0.3204 -3.2595 12 6 8.4795 -1.4616 -4.2085 13 8 9.5862 -1.6118 -4.6800 14 7 7.4903 -2.3164 -4.5273 15 6 6.2364 -2.1181 -4.0877 16 8 5.4190 -3.0100 -4.2044 17 6 3.2902 -1.5681 0.6639 18 6 2.0775 -0.7917 1.2100 19 1 1.3221 -1.4832 1.5833 20 6 2.5153 0.1658 2.3202 21 7 2.9826 -0.6060 3.4744 22 6 3.4267 0.0413 4.5964 23 1 3.4329 1.1208 4.6303 24 6 3.8690 -0.6900 5.6903 25 7 3.8610 -2.0055 5.6492 26 14 4.4755 0.1930 7.2206 27 1 4.3830 1.6607 7.0147 28 1 3.6367 -0.1972 8.3823 29 1 5.8882 -0.1826 7.4817 30 1 -0.3634 0.4633 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3634 -1.0261 -0.0573 33 1 2.1523 -0.1478 -2.0870 34 1 1.4611 -1.6600 -1.4145 35 1 4.1889 0.2020 -3.0253 36 1 3.8333 -1.4793 -3.4892 37 1 6.7228 0.7345 -4.4141 38 1 6.4995 0.8399 -2.6514 39 1 8.3298 -0.6657 -2.2324 40 1 8.9158 0.4886 -3.4556 41 1 7.6854 -3.0870 -5.0831 42 1 3.1178 -2.6402 0.7585 43 1 4.1894 -1.2845 1.2108 44 1 3.3237 0.7995 1.9555 45 1 1.6713 0.7882 2.6169 46 1 2.9767 -1.5755 3.4442 47 1 4.1704 -2.5165 6.4134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106844026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:19 Heat of formation + Delta-G solvation = -74.774114 kcal Electronic energy + Delta-G solvation = -29948.600254 eV Core-core repulsion = 25746.166681 eV Total energy + Delta-G solvation = -4202.433572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97987 -40.15596 -39.19578 -37.97078 -36.42658 -34.93386 -34.67719 -32.93974 -31.88687 -31.43780 -29.49312 -27.97146 -26.38458 -25.44624 -25.27739 -23.49938 -23.06732 -21.24745 -20.25528 -19.60283 -19.07013 -18.67246 -17.98732 -17.51583 -17.08245 -16.58196 -16.35668 -15.87047 -15.17204 -15.10214 -14.92656 -14.80793 -14.62191 -14.21433 -14.07902 -13.79424 -13.58610 -13.33884 -13.09123 -12.88659 -12.79238 -12.61898 -12.33633 -12.04376 -11.97608 -11.80110 -11.47631 -11.12076 -11.02323 -10.90412 -10.66224 -10.58506 -10.53864 -10.52783 -10.34038 -10.22871 -9.98698 -9.68469 -9.19199 -8.89958 -8.63328 -6.94096 -5.77281 -3.06493 1.40371 1.92793 2.55792 2.69678 2.74895 3.10711 3.43036 3.48208 3.50834 3.97705 4.11406 4.28546 4.45438 4.51120 4.54195 4.58622 4.77418 4.88674 4.89956 4.96359 5.01919 5.25006 5.31776 5.32822 5.42295 5.47541 5.55271 5.58578 5.67983 5.72224 5.75447 5.95163 6.04200 6.09120 6.11903 6.15645 6.23843 6.38375 6.42765 6.68622 6.82289 6.98211 7.16345 7.53300 7.69136 7.79975 8.11754 8.41075 9.52462 10.09208 10.43404 11.45482 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002773 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.830862 B =10093.499078 C =11703.786063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.084 0.916 4 C 0.101 3.899 5 N -0.617 5.617 6 C 0.510 3.490 7 O -0.530 6.530 8 C 0.114 3.886 9 N -0.600 5.600 10 C 0.112 3.888 11 C -0.159 4.159 12 C 0.527 3.473 13 O -0.505 6.505 14 N -0.674 5.674 15 C 0.718 3.282 16 O -0.554 6.554 17 C 0.112 3.888 18 C -0.103 4.103 19 H 0.087 0.913 20 C 0.164 3.836 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.425 0.575 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.018 0.982 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 6.579 -23.934 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.022 4.022 5 N -0.352 5.352 6 C 0.297 3.703 7 O -0.406 6.406 8 C -0.013 4.013 9 N -0.336 5.336 10 C -0.010 4.010 11 C -0.200 4.200 12 C 0.315 3.685 13 O -0.377 6.377 14 N -0.343 5.343 15 C 0.419 3.581 16 O -0.429 6.429 17 C -0.010 4.010 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.036 3.964 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.267 0.733 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.144 6.120 -23.806 24.607 hybrid contribution 0.416 -0.271 0.871 1.002 sum -0.728 5.849 -22.935 23.681 Atomic orbital electron populations 1.21733 0.93772 1.02105 1.02166 1.22220 0.96106 0.99677 0.93930 0.89745 1.22634 0.83268 0.98752 0.97547 1.48820 1.07971 1.65904 1.12456 1.20644 0.82722 0.78645 0.88307 1.90744 1.29870 1.47227 1.72717 1.21317 0.83909 1.04561 0.91492 1.46582 1.15608 1.11738 1.59699 1.21735 0.87252 0.88095 1.03934 1.22331 0.98579 0.97583 1.01467 1.21019 0.83816 0.83007 0.80646 1.90791 1.22536 1.72895 1.51521 1.44234 1.08450 1.29450 1.52153 1.15498 0.82014 0.82827 0.77739 1.91003 1.50194 1.41674 1.59981 1.22186 1.00277 0.98862 0.79651 1.22396 0.96599 0.97996 0.95245 0.89503 1.20682 0.96080 0.92774 0.86851 1.42378 1.77171 1.05721 1.12449 1.19236 1.34737 0.91224 0.91954 0.91194 1.24748 1.02198 0.95469 0.98501 1.69665 1.53265 1.04141 1.30914 0.86127 0.78210 0.78550 0.83352 1.20578 1.21869 1.21847 0.91730 0.92639 0.92366 0.90433 0.90560 0.86690 0.86130 0.90113 0.87819 0.85923 0.85560 0.73333 0.91760 0.89126 0.96386 0.96056 0.78241 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.17 37.15 0.34 -0.84 16 2 C -0.10 -1.01 3.18 -88.93 -0.28 -1.29 16 3 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 4 C 0.10 0.89 6.38 -2.31 -0.01 0.87 16 5 N -0.62 -7.89 3.29 -169.98 -0.56 -8.45 16 6 C 0.51 6.84 7.96 -10.99 -0.09 6.76 16 7 O -0.53 -9.48 16.77 5.55 0.09 -9.38 16 8 C 0.11 0.99 4.77 -5.20 -0.02 0.96 16 9 N -0.60 -5.53 2.28 -180.96 -0.41 -5.94 16 10 C 0.11 0.67 6.60 -3.90 -0.03 0.64 16 11 C -0.16 -1.12 6.30 -27.64 -0.17 -1.30 16 12 C 0.53 5.19 7.75 -11.03 -0.09 5.11 16 13 O -0.51 -6.43 17.93 5.60 0.10 -6.33 16 14 N -0.67 -6.69 5.18 -16.02 -0.08 -6.78 16 15 C 0.72 8.30 8.22 -87.75 -0.72 7.58 16 16 O -0.55 -8.17 16.57 5.33 0.09 -8.09 16 17 C 0.11 1.78 6.31 -2.98 -0.02 1.77 16 18 C -0.10 -1.49 2.64 -89.24 -0.24 -1.73 16 19 H 0.09 1.28 7.85 -51.93 -0.41 0.87 16 20 C 0.16 3.10 5.35 -4.04 -0.02 3.08 16 21 N -0.73 -18.11 5.33 -59.91 -0.32 -18.43 16 22 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 8.11 -51.92 -0.42 0.06 16 33 H 0.08 0.44 7.23 -51.93 -0.38 0.06 16 34 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 35 H 0.12 0.54 7.82 -51.93 -0.41 0.13 16 36 H 0.12 1.02 7.27 -51.93 -0.38 0.64 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.52 8.01 -51.93 -0.42 0.10 16 39 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.43 3.73 8.86 -40.82 -0.36 3.37 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.80 7.48 -51.93 -0.39 1.41 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.38 10.02 7.51 -40.82 -0.31 9.72 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -38.04 388.72 -8.35 -46.39 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.21 Total: 6.94 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -1.60 Total: 14.32 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.65 Total: -67.10 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.28 Total: -23.80 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.04 -8.35 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106844026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.384 kcal (2) G-P(sol) polarization free energy of solvation -38.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds