Wall clock time and date at job start Tue Mar 31 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 110.65738 * 2 1 4 4 C 1.54600 * 110.98954 * 236.84981 * 2 1 3 5 5 N 1.48120 * 103.42427 * 204.37546 * 4 2 1 6 6 C 1.34777 * 127.03057 * 219.28762 * 5 4 2 7 7 O 1.21287 * 119.99762 * 179.68085 * 6 5 4 8 8 C 1.50695 * 120.00304 * 359.67996 * 6 5 4 9 9 N 1.46497 * 109.47265 * 180.02562 * 8 6 5 10 10 C 1.46415 * 119.53437 * 269.97763 * 9 8 6 11 11 C 1.53364 * 109.41467 * 144.00620 * 10 9 8 12 12 C 1.50807 * 109.00705 * 47.02132 * 11 10 9 13 13 O 1.21233 * 120.01980 * 145.62560 * 12 11 10 14 14 N 1.34569 * 119.96446 * 325.34354 * 12 11 10 15 15 C 1.34286 * 119.53702 * 89.99804 * 9 8 6 16 16 O 1.21539 * 119.20750 * 5.69273 * 15 9 8 17 17 C 1.47479 * 105.93241 * 39.01961 * 5 4 2 18 18 C 1.54007 * 107.08772 * 334.78065 * 17 5 4 19 19 H 1.09004 * 110.32389 * 120.19506 * 18 17 5 20 20 C 1.53000 * 110.33103 * 242.31080 * 18 17 5 21 21 N 1.46498 * 109.46839 * 293.54897 * 20 18 17 22 22 C 1.36940 * 119.99454 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00361 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99578 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47113 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46929 * 119.99882 * 26 24 22 29 29 H 1.48495 * 109.47540 * 240.00281 * 26 24 22 30 30 H 1.08998 * 109.47512 * 296.80047 * 1 2 3 31 31 H 1.09005 * 109.47636 * 56.80749 * 1 2 3 32 32 H 1.09008 * 109.47133 * 176.80235 * 1 2 3 33 33 H 1.08997 * 110.61693 * 85.85697 * 4 2 1 34 34 H 1.08996 * 110.54608 * 322.85316 * 4 2 1 35 35 H 1.09006 * 109.47300 * 59.99935 * 8 6 5 36 36 H 1.09000 * 109.47535 * 300.00138 * 8 6 5 37 37 H 1.08999 * 109.46298 * 264.17746 * 10 9 8 38 38 H 1.08996 * 109.46501 * 24.16012 * 10 9 8 39 39 H 1.08997 * 109.71839 * 287.09225 * 11 10 9 40 40 H 1.08996 * 109.49190 * 166.80558 * 11 10 9 41 41 H 0.96998 * 119.50582 * 184.71384 * 14 12 11 42 42 H 1.08999 * 109.91549 * 94.14502 * 17 5 4 43 43 H 1.08998 * 109.91641 * 215.42246 * 17 5 4 44 44 H 1.09001 * 109.46856 * 53.54604 * 20 18 17 45 45 H 1.08995 * 109.46965 * 173.54568 * 20 18 17 46 46 H 0.96997 * 120.00603 * 359.97438 * 21 20 18 47 47 H 0.97000 * 119.99867 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2057 -0.7586 6 6 4.5592 -1.2404 -1.4967 7 8 5.6027 -1.5999 -0.9936 8 6 4.5232 -0.8326 -2.9469 9 7 5.8643 -0.9580 -3.5230 10 6 6.7799 0.1836 -3.4753 11 6 8.2122 -0.3204 -3.2595 12 6 8.4795 -1.4616 -4.2085 13 8 9.5862 -1.6118 -4.6800 14 7 7.4903 -2.3164 -4.5273 15 6 6.2364 -2.1181 -4.0877 16 8 5.4190 -3.0100 -4.2044 17 6 3.2902 -1.5681 0.6639 18 6 2.0775 -0.7917 1.2100 19 1 1.3221 -1.4832 1.5833 20 6 2.5153 0.1658 2.3202 21 7 2.9826 -0.6060 3.4744 22 6 3.4267 0.0413 4.5964 23 1 3.4329 1.1208 4.6303 24 6 3.8690 -0.6900 5.6903 25 7 3.8610 -2.0055 5.6492 26 14 4.4755 0.1930 7.2206 27 1 4.3830 1.6607 7.0147 28 1 3.6367 -0.1972 8.3823 29 1 5.8882 -0.1826 7.4817 30 1 -0.3634 0.4633 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3634 -1.0261 -0.0573 33 1 2.1523 -0.1478 -2.0870 34 1 1.4611 -1.6600 -1.4145 35 1 4.1889 0.2020 -3.0253 36 1 3.8333 -1.4793 -3.4892 37 1 6.7228 0.7345 -4.4141 38 1 6.4995 0.8399 -2.6514 39 1 8.3298 -0.6657 -2.2324 40 1 8.9158 0.4886 -3.4556 41 1 7.6854 -3.0870 -5.0831 42 1 3.1178 -2.6402 0.7585 43 1 4.1894 -1.2845 1.2108 44 1 3.3237 0.7995 1.9555 45 1 1.6713 0.7882 2.6169 46 1 2.9767 -1.5755 3.4442 47 1 4.1704 -2.5165 6.4134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106844026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:18 Heat of formation + Delta-G solvation = -104.358329 kcal Electronic energy + Delta-G solvation = -29949.883122 eV Core-core repulsion = 25746.166681 eV Total energy + Delta-G solvation = -4203.716440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.77554 -41.17121 -40.09846 -39.06359 -37.23721 -36.43623 -35.77722 -34.18885 -33.05252 -32.55224 -30.85020 -29.03408 -27.15492 -26.78953 -26.06044 -25.04946 -24.08864 -22.50971 -21.17192 -20.67413 -19.89181 -19.40932 -19.20191 -18.77175 -18.28542 -17.52431 -17.31797 -16.84200 -16.68253 -16.05434 -15.94466 -15.72649 -15.62910 -15.32034 -15.28466 -15.16241 -14.82459 -14.42700 -14.11384 -13.93865 -13.66229 -13.59907 -13.23361 -13.10649 -13.00800 -12.83808 -12.78013 -12.62690 -12.47123 -12.09990 -11.94329 -11.90027 -11.82538 -11.44775 -11.44261 -11.41971 -11.33642 -11.21774 -10.96618 -9.97937 -9.72014 -9.01247 -7.96610 -5.25472 0.58299 1.19323 1.45445 1.46782 1.56589 1.56961 1.85676 1.96313 2.26414 2.54547 3.33749 3.36858 3.41888 3.56779 3.58824 3.77972 3.83795 3.97090 4.08274 4.21740 4.28648 4.35732 4.41286 4.50211 4.54052 4.59523 4.62074 4.72263 4.80761 4.81615 4.89053 4.92981 4.97790 5.01330 5.08348 5.15646 5.26848 5.31329 5.38945 5.43504 5.48150 5.62241 6.21765 6.25630 6.37216 6.56679 6.96789 7.11427 7.31699 8.08348 8.29842 9.27198 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002773 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.830862 B =10093.499078 C =11703.786063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.091 0.909 4 C 0.101 3.899 5 N -0.616 5.616 6 C 0.501 3.499 7 O -0.588 6.588 8 C 0.121 3.879 9 N -0.597 5.597 10 C 0.109 3.891 11 C -0.156 4.156 12 C 0.528 3.472 13 O -0.538 6.538 14 N -0.672 5.672 15 C 0.713 3.287 16 O -0.593 6.593 17 C 0.117 3.883 18 C -0.094 4.094 19 H 0.082 0.918 20 C 0.165 3.835 21 N -0.747 5.747 22 C -0.242 4.242 23 H 0.077 0.923 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.973 3.027 27 H -0.263 1.263 28 H -0.292 1.292 29 H -0.297 1.297 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.427 0.573 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.013 0.987 45 H 0.030 0.970 46 H 0.372 0.628 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 9.597 -26.072 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.290 3.710 7 O -0.468 6.468 8 C -0.005 4.005 9 N -0.332 5.332 10 C -0.012 4.012 11 C -0.196 4.196 12 C 0.318 3.682 13 O -0.412 6.412 14 N -0.340 5.340 15 C 0.415 3.585 16 O -0.471 6.471 17 C -0.006 4.006 18 C -0.113 4.113 19 H 0.101 0.899 20 C 0.038 3.962 21 N -0.390 5.390 22 C -0.374 4.374 23 H 0.095 0.905 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.802 3.198 27 H -0.187 1.187 28 H -0.219 1.219 29 H -0.224 1.224 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.187 0.813 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.172 0.828 41 H 0.268 0.732 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.048 0.952 46 H 0.204 0.796 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.753 9.220 -25.984 27.708 hybrid contribution 0.905 -1.205 1.516 2.138 sum -1.848 8.015 -24.468 25.813 Atomic orbital electron populations 1.21716 0.91989 1.02741 1.02917 1.22220 0.97408 0.99358 0.91817 0.89030 1.22951 0.80743 0.99902 0.98369 1.48937 1.09782 1.65378 1.10880 1.21707 0.81808 0.77417 0.90112 1.90722 1.32047 1.49754 1.74230 1.21555 0.83923 1.07645 0.87373 1.46795 1.16456 1.11669 1.58321 1.22090 0.85457 0.87101 1.06582 1.22405 1.00571 0.97187 0.99406 1.21545 0.83077 0.83215 0.80318 1.90776 1.23689 1.73802 1.52961 1.44241 1.08277 1.29597 1.51902 1.15723 0.81879 0.83195 0.77728 1.90970 1.51204 1.43143 1.61739 1.21848 0.98687 0.98178 0.81932 1.22270 0.95812 0.97507 0.95744 0.89929 1.20834 0.95702 0.93264 0.86369 1.42634 1.77247 1.05559 1.13522 1.19666 1.33310 0.91689 0.92764 0.90534 1.25597 1.03437 0.96215 1.01794 1.69830 1.55065 1.05681 1.31577 0.85075 0.76960 0.78309 0.79445 1.18721 1.21878 1.22405 0.93036 0.89549 0.92142 0.85530 0.89362 0.81271 0.85308 0.86378 0.86178 0.87640 0.82776 0.73211 0.93314 0.93998 0.96943 0.95199 0.79619 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.17 71.98 0.66 -1.13 16 2 C -0.09 -1.52 3.18 -9.70 -0.03 -1.55 16 3 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 4 C 0.10 1.38 6.38 86.61 0.55 1.93 16 5 N -0.62 -14.93 3.29 -810.09 -2.67 -17.60 16 6 C 0.50 12.83 7.96 87.66 0.70 13.52 16 7 O -0.59 -21.58 16.77 -3.05 -0.05 -21.64 16 8 C 0.12 1.67 4.77 85.63 0.41 2.08 16 9 N -0.60 -9.55 2.28 -844.98 -1.93 -11.48 16 10 C 0.11 0.92 6.60 86.52 0.57 1.49 16 11 C -0.16 -1.94 6.30 30.00 0.19 -1.76 16 12 C 0.53 10.14 7.75 87.72 0.68 10.82 16 13 O -0.54 -13.67 17.93 -2.88 -0.05 -13.72 16 14 N -0.67 -13.25 5.18 -441.64 -2.29 -15.54 16 15 C 0.71 15.92 8.22 179.34 1.47 17.40 16 16 O -0.59 -17.38 16.57 -3.84 -0.06 -17.44 16 17 C 0.12 3.87 6.31 86.53 0.55 4.41 16 18 C -0.09 -2.69 2.64 -9.90 -0.03 -2.72 16 19 H 0.08 2.45 7.85 -2.38 -0.02 2.43 16 20 C 0.16 6.25 5.35 86.38 0.46 6.71 16 21 N -0.75 -38.05 5.33 -343.46 -1.83 -39.88 16 22 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 23 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 26 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.79 8.11 -2.38 -0.02 0.77 16 33 H 0.13 0.57 7.23 -2.39 -0.02 0.55 16 34 H 0.09 1.07 8.02 -2.39 -0.02 1.05 16 35 H 0.17 0.50 7.82 -2.38 -0.02 0.48 16 36 H 0.13 1.69 7.27 -2.39 -0.02 1.67 16 37 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.12 0.71 8.01 -2.39 -0.02 0.69 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.43 7.72 8.86 -92.71 -0.82 6.90 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.78 7.48 -2.39 -0.02 1.76 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.37 20.41 7.51 -92.71 -0.70 19.72 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -89.34 388.72 0.41 -88.93 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.51 Total: 25.79 kcal Atomic # 6 Polarization: 26.80 SS G_CDS: 7.49 Total: 34.29 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -8.43 Total: -145.00 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.17 Total: -52.80 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -89.34 0.41 -88.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106844026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.428 kcal (2) G-P(sol) polarization free energy of solvation -89.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds