Wall clock time and date at job start Tue Mar 31 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.28897 * 2 1 4 4 C 1.53997 * 110.32972 * 237.86839 * 2 1 3 5 5 N 1.47491 * 107.08624 * 242.41087 * 4 2 1 6 6 C 1.34777 * 127.03617 * 154.51108 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30701 * 6 5 4 9 9 N 1.46491 * 109.46957 * 179.72354 * 8 6 5 10 10 C 1.47316 * 126.69434 * 89.99677 * 9 8 6 11 11 C 1.51580 * 103.59353 * 179.97438 * 10 9 8 12 12 O 1.21239 * 127.15473 * 180.02562 * 11 10 9 13 13 N 1.34759 * 105.69064 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.18305 * 179.97438 * 13 11 10 15 15 C 1.33803 * 111.64163 * 359.76680 * 13 11 10 16 16 O 1.21537 * 123.77031 * 180.25100 * 15 13 11 17 17 C 1.48119 * 105.92795 * 334.77764 * 5 4 2 18 18 C 1.54599 * 103.42335 * 39.02542 * 17 5 4 19 19 H 1.08998 * 110.73434 * 81.24140 * 18 17 5 20 20 C 1.53003 * 110.83077 * 204.44701 * 18 17 5 21 21 N 1.46501 * 109.46890 * 288.55652 * 20 18 17 22 22 C 1.36940 * 120.00047 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99827 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99930 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00117 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00440 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47451 * 90.00217 * 26 24 22 28 28 H 1.48497 * 109.47716 * 210.00389 * 26 24 22 29 29 H 1.48504 * 109.46972 * 330.00532 * 26 24 22 30 30 H 1.09001 * 109.46710 * 180.67773 * 1 2 3 31 31 H 1.08994 * 109.47145 * 300.67943 * 1 2 3 32 32 H 1.08996 * 109.47019 * 60.68409 * 1 2 3 33 33 H 1.09001 * 109.92008 * 123.05168 * 4 2 1 34 34 H 1.09002 * 109.91619 * 1.77196 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.08993 * 110.59744 * 298.49451 * 10 9 8 38 38 H 1.09003 * 110.59428 * 61.44002 * 10 9 8 39 39 H 1.09003 * 109.46951 * 0.02562 * 14 13 11 40 40 H 1.09004 * 109.47334 * 120.02611 * 14 13 11 41 41 H 1.09005 * 109.47101 * 240.02522 * 14 13 11 42 42 H 1.09002 * 110.65999 * 157.50143 * 17 5 4 43 43 H 1.08995 * 110.66402 * 280.62090 * 17 5 4 44 44 H 1.09001 * 109.47462 * 48.55947 * 20 18 17 45 45 H 1.08995 * 109.46778 * 168.56333 * 20 18 17 46 46 H 0.97004 * 119.99994 * 0.02562 * 21 20 18 47 47 H 0.96999 * 120.00267 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8278 -1.9216 -0.7103 6 6 3.0615 -3.0872 -1.3454 7 8 3.7093 -3.9555 -0.8002 8 6 2.5231 -3.3090 -2.7354 9 7 2.9156 -4.6402 -3.2043 10 6 2.1605 -5.8930 -3.0299 11 6 3.0327 -6.9318 -3.7065 12 8 2.8098 -8.1189 -3.8118 13 7 4.1074 -6.2616 -4.1667 14 6 5.2169 -6.8843 -4.8929 15 6 4.0338 -4.9562 -3.8823 16 8 4.8834 -4.1468 -4.1989 17 6 3.2790 -1.5396 0.6478 18 6 2.0671 -0.7735 1.2263 19 1 1.3164 -1.4676 1.6040 20 6 2.5095 0.1940 2.3259 21 7 2.9003 -0.5654 3.5163 22 6 3.3343 0.0924 4.6362 23 1 3.3889 1.1710 4.6417 24 6 3.7051 -0.6272 5.7638 25 7 4.1218 0.0051 6.8403 26 14 3.6114 -2.4928 5.7540 27 1 4.9026 -3.0508 5.2781 28 1 3.3375 -2.9820 7.1290 29 1 2.5194 -2.9287 4.8468 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5243 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7181 -0.1226 -1.8102 34 1 1.2335 -1.1157 -1.8359 35 1 1.4357 -3.2353 -2.7199 36 1 2.9290 -2.5528 -3.4072 37 1 2.0401 -6.1240 -1.9716 38 1 1.1901 -5.8275 -3.5221 39 1 5.0297 -7.9532 -4.9952 40 1 5.3020 -6.4341 -5.8820 41 1 6.1445 -6.7289 -4.3420 42 1 3.4936 -2.4257 1.2452 43 1 4.1523 -0.8897 0.5943 44 1 3.3584 0.7804 1.9741 45 1 1.6850 0.8617 2.5755 46 1 2.8516 -1.5342 3.5111 47 1 4.3805 -0.4977 7.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106871821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:36 Heat of formation + Delta-G solvation = -44.269890 kcal Electronic energy + Delta-G solvation = -29736.027693 eV Core-core repulsion = 25534.916882 eV Total energy + Delta-G solvation = -4201.110810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68579 -40.29526 -39.01300 -38.14064 -36.47359 -35.52470 -34.91066 -33.02783 -31.62626 -30.97879 -29.52500 -27.57759 -27.31317 -26.48532 -25.35291 -23.17023 -22.73262 -21.27940 -20.86970 -20.16381 -19.54867 -18.07233 -17.84481 -17.53668 -17.09148 -16.98162 -16.26402 -16.02620 -15.69893 -14.99489 -14.81040 -14.59913 -14.49930 -14.42251 -14.34883 -13.99266 -13.79928 -13.49246 -13.21928 -13.10614 -13.00478 -12.90505 -12.61211 -12.43221 -12.21230 -12.11207 -11.57226 -11.47763 -11.31678 -10.97204 -10.70836 -10.66262 -10.60672 -10.47407 -10.37971 -10.19937 -10.13549 -9.60631 -9.33789 -8.92841 -8.81288 -7.26438 -5.78607 -3.14770 1.22195 1.56016 2.35523 2.42229 2.58763 2.91872 3.37755 3.41557 3.46421 3.60123 4.11686 4.17464 4.38554 4.51841 4.58239 4.60907 4.64266 4.73753 4.74823 4.80868 4.92634 5.06166 5.11028 5.22290 5.25733 5.32247 5.33172 5.36376 5.50818 5.57652 5.63761 5.64024 5.82033 5.85654 5.92617 5.99449 6.03736 6.11314 6.29687 6.56539 6.66454 6.66965 6.92376 7.35815 7.66169 7.93507 7.96370 8.40160 9.18640 9.91208 10.09918 11.39633 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002665 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.558988 B =10503.239133 C =11674.515130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.509 3.491 7 O -0.530 6.530 8 C 0.140 3.860 9 N -0.611 5.611 10 C 0.065 3.935 11 C 0.527 3.473 12 O -0.472 6.472 13 N -0.579 5.579 14 C 0.089 3.911 15 C 0.707 3.293 16 O -0.536 6.536 17 C 0.112 3.888 18 C -0.107 4.107 19 H 0.083 0.917 20 C 0.169 3.831 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -7.601 -27.753 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.022 4.022 5 N -0.354 5.354 6 C 0.295 3.705 7 O -0.405 6.405 8 C 0.014 3.986 9 N -0.349 5.349 10 C -0.061 4.061 11 C 0.314 3.686 12 O -0.342 6.342 13 N -0.325 5.325 14 C -0.052 4.052 15 C 0.409 3.591 16 O -0.409 6.409 17 C -0.009 4.009 18 C -0.126 4.126 19 H 0.101 0.899 20 C 0.041 3.959 21 N -0.402 5.402 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.691 -8.114 -27.604 29.782 hybrid contribution 0.020 -1.254 0.305 1.291 sum -7.671 -9.369 -27.300 29.864 Atomic orbital electron populations 1.21843 0.93973 1.01916 1.02203 1.22083 0.96456 0.99969 0.93403 0.89030 1.22318 0.95338 0.87510 0.97013 1.48866 1.53653 1.14504 1.18366 1.20691 0.80961 0.80983 0.87881 1.90758 1.39724 1.42626 1.67428 1.21115 1.01725 0.82231 0.93495 1.46957 1.22035 1.07927 1.57935 1.22556 0.96869 0.82021 1.04682 1.20827 0.81794 0.88532 0.77407 1.90827 1.74082 1.13445 1.55868 1.46225 1.23034 1.09330 1.53903 1.21842 0.87627 0.99033 0.96719 1.15736 0.82520 0.81995 0.78859 1.90995 1.41292 1.50814 1.57803 1.22556 0.97187 0.99965 0.81229 1.22579 0.97025 0.97983 0.95044 0.89851 1.20612 0.97264 0.92569 0.85418 1.42730 1.80915 1.04531 1.12056 1.19029 1.35938 0.93173 0.89412 0.89164 1.24665 1.01101 0.97279 0.95951 1.69698 1.50424 1.34378 1.03602 0.86581 0.77984 0.87308 0.76828 1.20951 1.21670 1.20397 0.92704 0.91695 0.92554 0.90985 0.90747 0.86315 0.86115 0.85545 0.85640 0.88729 0.90290 0.90230 0.89793 0.90235 0.95158 0.94994 0.80653 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.89 37.16 0.33 -0.78 16 2 C -0.10 -0.92 3.17 -89.25 -0.28 -1.20 16 3 H 0.09 0.81 7.85 -51.92 -0.41 0.40 16 4 C 0.10 0.78 6.42 -2.98 -0.02 0.76 16 5 N -0.62 -7.11 3.29 -169.97 -0.56 -7.67 16 6 C 0.51 6.26 7.96 -10.98 -0.09 6.17 16 7 O -0.53 -9.04 16.64 5.55 0.09 -8.94 16 8 C 0.14 1.06 5.71 -5.20 -0.03 1.03 16 9 N -0.61 -5.56 2.51 -181.40 -0.45 -6.02 16 10 C 0.06 0.43 7.66 -4.32 -0.03 0.40 16 11 C 0.53 4.86 8.32 -10.56 -0.09 4.77 16 12 O -0.47 -5.41 17.51 5.59 0.10 -5.31 16 13 N -0.58 -5.67 3.00 -128.16 -0.39 -6.06 16 14 C 0.09 0.65 10.76 59.85 0.64 1.29 16 15 C 0.71 8.21 8.31 -88.01 -0.73 7.47 16 16 O -0.54 -7.95 17.34 5.33 0.09 -7.86 16 17 C 0.11 1.61 6.44 -2.31 -0.01 1.60 16 18 C -0.11 -1.43 2.61 -88.93 -0.23 -1.66 16 19 H 0.08 1.19 7.86 -51.93 -0.41 0.78 16 20 C 0.17 2.97 5.58 -4.04 -0.02 2.95 16 21 N -0.76 -17.45 5.32 -59.91 -0.32 -17.77 16 22 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 26 Si 0.88 22.40 27.73 -169.99 -4.71 17.68 16 27 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 30 H 0.05 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.36 7.09 -51.93 -0.37 0.00 16 35 H 0.12 0.42 7.92 -51.93 -0.41 0.01 16 36 H 0.12 0.81 8.02 -51.93 -0.42 0.39 16 37 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.58 7.64 -51.93 -0.40 0.19 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.43 7.85 -51.93 -0.41 1.02 16 43 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.03 0.54 7.99 -51.93 -0.41 0.13 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -38.99 391.18 -7.57 -46.55 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.26 Total: 2.19 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -0.82 Total: 15.87 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.94 Total: -66.07 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.28 Total: -22.12 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.99 -7.57 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106871821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.282 kcal (2) G-P(sol) polarization free energy of solvation -38.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds