Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.28897 * 2 1 4 4 C 1.53997 * 110.32972 * 237.86839 * 2 1 3 5 5 N 1.47491 * 107.08624 * 242.41087 * 4 2 1 6 6 C 1.34777 * 127.03617 * 154.51108 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30701 * 6 5 4 9 9 N 1.46491 * 109.46957 * 179.72354 * 8 6 5 10 10 C 1.47316 * 126.69434 * 89.99677 * 9 8 6 11 11 C 1.51580 * 103.59353 * 179.97438 * 10 9 8 12 12 O 1.21239 * 127.15473 * 180.02562 * 11 10 9 13 13 N 1.34759 * 105.69064 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.18305 * 179.97438 * 13 11 10 15 15 C 1.33803 * 111.64163 * 359.76680 * 13 11 10 16 16 O 1.21537 * 123.77031 * 180.25100 * 15 13 11 17 17 C 1.48119 * 105.92795 * 334.77764 * 5 4 2 18 18 C 1.54599 * 103.42335 * 39.02542 * 17 5 4 19 19 H 1.08998 * 110.73434 * 81.24140 * 18 17 5 20 20 C 1.53003 * 110.83077 * 204.44701 * 18 17 5 21 21 N 1.46501 * 109.46890 * 288.55652 * 20 18 17 22 22 C 1.36940 * 120.00047 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99827 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99930 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00117 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00440 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47451 * 90.00217 * 26 24 22 28 28 H 1.48497 * 109.47716 * 210.00389 * 26 24 22 29 29 H 1.48504 * 109.46972 * 330.00532 * 26 24 22 30 30 H 1.09001 * 109.46710 * 180.67773 * 1 2 3 31 31 H 1.08994 * 109.47145 * 300.67943 * 1 2 3 32 32 H 1.08996 * 109.47019 * 60.68409 * 1 2 3 33 33 H 1.09001 * 109.92008 * 123.05168 * 4 2 1 34 34 H 1.09002 * 109.91619 * 1.77196 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.08993 * 110.59744 * 298.49451 * 10 9 8 38 38 H 1.09003 * 110.59428 * 61.44002 * 10 9 8 39 39 H 1.09003 * 109.46951 * 0.02562 * 14 13 11 40 40 H 1.09004 * 109.47334 * 120.02611 * 14 13 11 41 41 H 1.09005 * 109.47101 * 240.02522 * 14 13 11 42 42 H 1.09002 * 110.65999 * 157.50143 * 17 5 4 43 43 H 1.08995 * 110.66402 * 280.62090 * 17 5 4 44 44 H 1.09001 * 109.47462 * 48.55947 * 20 18 17 45 45 H 1.08995 * 109.46778 * 168.56333 * 20 18 17 46 46 H 0.97004 * 119.99994 * 0.02562 * 21 20 18 47 47 H 0.96999 * 120.00267 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8278 -1.9216 -0.7103 6 6 3.0615 -3.0872 -1.3454 7 8 3.7093 -3.9555 -0.8002 8 6 2.5231 -3.3090 -2.7354 9 7 2.9156 -4.6402 -3.2043 10 6 2.1605 -5.8930 -3.0299 11 6 3.0327 -6.9318 -3.7065 12 8 2.8098 -8.1189 -3.8118 13 7 4.1074 -6.2616 -4.1667 14 6 5.2169 -6.8843 -4.8929 15 6 4.0338 -4.9562 -3.8823 16 8 4.8834 -4.1468 -4.1989 17 6 3.2790 -1.5396 0.6478 18 6 2.0671 -0.7735 1.2263 19 1 1.3164 -1.4676 1.6040 20 6 2.5095 0.1940 2.3259 21 7 2.9003 -0.5654 3.5163 22 6 3.3343 0.0924 4.6362 23 1 3.3889 1.1710 4.6417 24 6 3.7051 -0.6272 5.7638 25 7 4.1218 0.0051 6.8403 26 14 3.6114 -2.4928 5.7540 27 1 4.9026 -3.0508 5.2781 28 1 3.3375 -2.9820 7.1290 29 1 2.5194 -2.9287 4.8468 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5243 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7181 -0.1226 -1.8102 34 1 1.2335 -1.1157 -1.8359 35 1 1.4357 -3.2353 -2.7199 36 1 2.9290 -2.5528 -3.4072 37 1 2.0401 -6.1240 -1.9716 38 1 1.1901 -5.8275 -3.5221 39 1 5.0297 -7.9532 -4.9952 40 1 5.3020 -6.4341 -5.8820 41 1 6.1445 -6.7289 -4.3420 42 1 3.4936 -2.4257 1.2452 43 1 4.1523 -0.8897 0.5943 44 1 3.3584 0.7804 1.9741 45 1 1.6850 0.8617 2.5755 46 1 2.8516 -1.5342 3.5111 47 1 4.3805 -0.4977 7.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106871821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = -73.543200 kcal Electronic energy + Delta-G solvation = -29737.297078 eV Core-core repulsion = 25534.916882 eV Total energy + Delta-G solvation = -4202.380196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.41152 -41.21402 -39.83010 -39.14023 -37.31763 -36.61675 -36.23826 -34.24708 -33.27255 -31.80467 -30.74995 -28.31699 -28.11471 -27.20858 -26.60397 -24.63903 -23.60222 -22.59568 -21.63081 -21.19611 -20.41646 -19.61536 -18.74780 -18.51347 -17.83951 -17.81238 -17.23032 -16.88886 -16.58731 -16.50812 -15.86426 -15.71458 -15.52157 -15.33061 -15.14174 -15.05270 -14.77044 -14.72581 -14.46028 -13.96499 -13.83155 -13.73728 -13.59891 -13.55780 -13.31188 -13.09802 -12.95515 -12.80817 -12.48408 -12.13429 -12.10818 -11.88637 -11.74079 -11.54866 -11.51132 -11.43891 -11.29807 -11.01059 -10.97177 -10.08683 -9.74233 -9.31445 -8.05864 -5.38256 0.49401 0.89798 1.33109 1.36578 1.42273 1.50268 1.68868 1.86167 2.12165 2.43950 2.96741 3.26001 3.29812 3.57325 3.61839 3.63540 3.82602 3.99901 4.12046 4.19149 4.27982 4.30334 4.31722 4.36268 4.37300 4.44484 4.49905 4.57537 4.66070 4.74394 4.76145 4.80949 4.86693 4.93815 5.03804 5.08030 5.19923 5.25784 5.26684 5.42782 5.59041 5.74239 5.93694 6.18800 6.22910 6.51031 6.86654 7.04828 7.05413 7.82594 7.98847 9.15711 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002665 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.558988 B =10503.239133 C =11674.515130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.097 0.903 4 C 0.100 3.900 5 N -0.616 5.616 6 C 0.500 3.500 7 O -0.589 6.589 8 C 0.144 3.856 9 N -0.608 5.608 10 C 0.070 3.930 11 C 0.525 3.475 12 O -0.499 6.499 13 N -0.584 5.584 14 C 0.083 3.917 15 C 0.699 3.301 16 O -0.578 6.578 17 C 0.111 3.889 18 C -0.096 4.096 19 H 0.078 0.922 20 C 0.165 3.835 21 N -0.761 5.761 22 C -0.230 4.230 23 H 0.062 0.938 24 C -0.061 4.061 25 N -0.982 5.982 26 Si 0.947 3.053 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.254 1.254 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.175 0.825 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.175 0.825 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.362 0.638 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -7.988 -30.868 33.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.021 4.021 5 N -0.350 5.350 6 C 0.289 3.711 7 O -0.469 6.469 8 C 0.020 3.980 9 N -0.344 5.344 10 C -0.054 4.054 11 C 0.314 3.686 12 O -0.371 6.371 13 N -0.329 5.329 14 C -0.058 4.058 15 C 0.401 3.599 16 O -0.454 6.454 17 C -0.013 4.013 18 C -0.115 4.115 19 H 0.097 0.903 20 C 0.039 3.961 21 N -0.407 5.407 22 C -0.361 4.361 23 H 0.080 0.920 24 C -0.253 4.253 25 N -0.633 5.633 26 Si 0.775 3.225 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.179 1.179 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.193 0.807 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.192 0.808 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.195 0.805 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.642 -8.476 -30.783 33.656 hybrid contribution 0.950 -1.017 1.254 1.873 sum -9.692 -9.494 -29.530 32.497 Atomic orbital electron populations 1.21831 0.92329 1.02424 1.02969 1.22093 0.97711 0.99791 0.91591 0.88510 1.22611 0.96641 0.86257 0.96575 1.48931 1.53506 1.15469 1.17048 1.21684 0.79990 0.80126 0.89323 1.90736 1.42433 1.44611 1.69157 1.21447 1.04653 0.81844 0.90028 1.47154 1.21331 1.09249 1.56669 1.22792 0.97762 0.79896 1.04954 1.21249 0.81790 0.88578 0.76940 1.90815 1.74646 1.14625 1.57035 1.46386 1.23659 1.09068 1.53819 1.21992 0.87024 0.99675 0.97093 1.16005 0.82766 0.82092 0.79027 1.90957 1.42839 1.51901 1.59711 1.22317 0.97428 0.98377 0.83136 1.22394 0.96468 0.97321 0.95363 0.90327 1.20818 0.97142 0.93329 0.84834 1.42814 1.80672 1.04844 1.12357 1.19060 1.34043 0.92213 0.90767 0.91979 1.25422 1.01999 1.02040 0.95836 1.69862 1.52732 1.36208 1.04484 0.85522 0.78402 0.81574 0.76952 1.21260 1.21901 1.17913 0.92252 0.93274 0.89580 0.89257 0.86293 0.80734 0.84611 0.85297 0.80813 0.87708 0.89085 0.90817 0.93258 0.91411 0.95275 0.94575 0.80488 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.89 71.98 0.64 -0.90 16 2 C -0.09 -1.37 3.17 -9.91 -0.03 -1.40 16 3 H 0.10 1.38 7.85 -2.38 -0.02 1.36 16 4 C 0.10 1.07 6.42 86.53 0.56 1.62 16 5 N -0.62 -12.55 3.29 -810.07 -2.67 -15.22 16 6 C 0.50 11.15 7.96 87.66 0.70 11.85 16 7 O -0.59 -19.95 16.64 -3.04 -0.05 -20.00 16 8 C 0.14 1.56 5.71 85.64 0.49 2.05 16 9 N -0.61 -9.23 2.51 -846.24 -2.12 -11.35 16 10 C 0.07 0.71 7.66 85.76 0.66 1.36 16 11 C 0.52 8.84 8.32 87.94 0.73 9.57 16 12 O -0.50 -10.87 17.51 -2.90 -0.05 -10.93 16 13 N -0.58 -10.90 3.00 -796.63 -2.39 -13.30 16 14 C 0.08 1.19 10.76 127.77 1.37 2.57 16 15 C 0.70 15.33 8.31 179.43 1.49 16.82 16 16 O -0.58 -16.88 17.34 -3.83 -0.07 -16.94 16 17 C 0.11 3.12 6.44 86.61 0.56 3.68 16 18 C -0.10 -2.41 2.61 -9.70 -0.03 -2.44 16 19 H 0.08 2.09 7.86 -2.39 -0.02 2.07 16 20 C 0.16 5.71 5.58 86.38 0.48 6.20 16 21 N -0.76 -35.19 5.32 -343.45 -1.83 -37.01 16 22 C -0.23 -13.11 10.47 84.03 0.88 -12.23 16 23 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 24 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 25 N -0.98 -63.61 13.97 21.65 0.30 -63.30 16 26 Si 0.95 47.03 27.73 68.60 1.90 48.93 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.25 -11.48 6.52 99.48 0.65 -10.83 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.29 7.09 -2.39 -0.02 0.27 16 35 H 0.18 -0.05 7.92 -2.38 -0.02 -0.07 16 36 H 0.14 1.18 8.02 -2.39 -0.02 1.16 16 37 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.17 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.10 1.25 7.64 -2.39 -0.02 1.24 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.05 1.72 7.85 -2.39 -0.02 1.70 16 43 H 0.07 2.03 7.93 -2.39 -0.02 2.01 16 44 H 0.03 1.03 7.99 -2.39 -0.02 1.01 16 45 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.36 16.47 5.53 -92.71 -0.51 15.96 16 47 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -91.14 391.18 2.41 -88.74 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.41 Total: 14.85 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 8.97 Total: 35.55 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -8.71 Total: -140.19 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.17 Total: -47.87 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -91.14 2.41 -88.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106871821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.195 kcal (2) G-P(sol) polarization free energy of solvation -91.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds