Wall clock time and date at job start Tue Mar 31 2020 21:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.53965 * 307.82762 * 10 9 8 12 12 N 1.47317 * 110.59783 * 70.82956 * 10 9 8 13 13 C 1.34528 * 106.61865 * 118.52479 * 12 10 9 14 14 O 1.21537 * 123.76968 * 179.97438 * 13 12 10 15 15 N 1.33788 * 112.45823 * 359.97438 * 13 12 10 16 16 C 1.34769 * 111.65009 * 0.02562 * 15 13 12 17 17 O 1.21228 * 127.16012 * 179.97438 * 16 15 13 18 18 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 19 19 C 1.54004 * 107.08487 * 334.78016 * 18 5 4 20 20 H 1.09003 * 110.32797 * 120.19357 * 19 18 5 21 21 C 1.52991 * 110.32869 * 242.41494 * 19 18 5 22 22 N 1.46501 * 109.46985 * 293.54194 * 21 19 18 23 23 C 1.36940 * 119.99962 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99982 * 0.02562 * 23 22 21 25 25 C 1.38815 * 119.99775 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00268 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99829 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47448 * 0.02562 * 27 25 23 29 29 H 1.48491 * 109.47203 * 120.00408 * 27 25 23 30 30 H 1.48503 * 109.47359 * 240.00465 * 27 25 23 31 31 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 32 32 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 33 33 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 34 34 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 35 35 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 38 38 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 39 39 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 40 40 H 0.97002 * 126.68927 * 298.50308 * 12 10 9 41 41 H 0.97002 * 124.17402 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.91504 * 94.14277 * 18 5 4 43 43 H 1.08998 * 109.91568 * 215.23013 * 18 5 4 44 44 H 1.08996 * 109.47677 * 53.54683 * 21 19 18 45 45 H 1.08998 * 109.47257 * 173.54816 * 21 19 18 46 46 H 0.97004 * 120.00248 * 0.02562 * 22 21 19 47 47 H 0.96993 * 120.00144 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9215 -0.9740 -3.5516 10 6 5.8834 -0.5666 -5.0258 11 1 5.0982 -1.1091 -5.5523 12 7 5.6901 0.8880 -5.1567 13 6 6.7761 1.3649 -5.7915 14 8 6.9395 2.5384 -6.0620 15 7 7.6561 0.4029 -6.0917 16 6 7.2293 -0.8074 -5.6804 17 8 7.8024 -1.8681 -5.8075 18 6 3.2903 -1.5681 0.6639 19 6 2.0776 -0.7917 1.2100 20 1 1.3221 -1.4831 1.5833 21 6 2.5158 0.1675 2.3183 22 7 2.9846 -0.6023 3.4733 23 6 3.4303 0.0468 4.5936 24 1 3.4359 1.1263 4.6259 25 6 3.8749 -0.6827 5.6877 26 7 3.8685 -1.9982 5.6482 27 14 4.4823 0.2029 7.2162 28 1 4.3877 1.6702 7.0088 29 1 3.6457 -0.1870 8.3795 30 1 5.8959 -0.1706 7.4759 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5626 -0.8599 33 1 -0.3633 -1.0261 -0.0573 34 1 2.1524 -0.1478 -2.0871 35 1 1.4612 -1.6600 -1.4145 36 1 3.8299 -1.4860 -3.4873 37 1 4.1896 0.1964 -3.0308 38 1 6.6135 -0.3265 -3.0130 39 1 6.2538 -2.0089 -3.4695 40 1 4.9282 1.4017 -4.8460 41 1 8.4975 0.5576 -6.5490 42 1 3.1179 -2.6402 0.7584 43 1 4.1908 -1.2876 1.2101 44 1 3.3234 0.8013 1.9521 45 1 1.6717 0.7899 2.6150 46 1 2.9799 -1.5719 3.4441 47 1 4.1795 -2.5079 6.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106962817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:10 Heat of formation + Delta-G solvation = -75.565536 kcal Electronic energy + Delta-G solvation = -29145.426876 eV Core-core repulsion = 24942.958985 eV Total energy + Delta-G solvation = -4202.467891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.80872 -40.18810 -39.06707 -38.14867 -36.83400 -35.01338 -34.67427 -32.98217 -32.58082 -31.44134 -29.41534 -28.16595 -26.44357 -25.59962 -23.91737 -23.28436 -22.84953 -21.79703 -21.19022 -19.86923 -19.22625 -18.84429 -17.48498 -17.39917 -17.06229 -16.84889 -16.32243 -16.17507 -16.09329 -15.47647 -15.21983 -14.74043 -14.63850 -14.24227 -14.21145 -13.72261 -13.61132 -13.33458 -13.07921 -12.88117 -12.65843 -12.63101 -12.42738 -11.96683 -11.81728 -11.60243 -11.48857 -11.42707 -11.11518 -10.90056 -10.84822 -10.74568 -10.65022 -10.54108 -10.34444 -10.03619 -9.98395 -9.85298 -9.67627 -8.89470 -8.63712 -6.93599 -5.76910 -3.05959 1.10819 1.93835 2.54147 2.58300 2.62382 2.91375 3.43805 3.46106 3.49342 3.51624 3.99780 4.24901 4.42852 4.46795 4.55690 4.62259 4.68905 4.80211 4.86420 4.93409 5.04600 5.25863 5.30204 5.41060 5.44719 5.46380 5.55381 5.57575 5.65931 5.68998 5.72659 5.93852 6.02911 6.10994 6.14011 6.22873 6.23926 6.38310 6.41850 6.42834 6.68757 6.82687 6.89225 7.55458 7.65841 7.70094 8.13980 8.41637 9.53068 10.09487 10.43841 11.45965 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.002243 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.807794 B =12481.459748 C =13294.343050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.527 3.473 7 O -0.535 6.535 8 C -0.133 4.133 9 C -0.107 4.107 10 C 0.093 3.907 11 H 0.133 0.867 12 N -0.721 5.721 13 C 0.705 3.295 14 O -0.544 6.544 15 N -0.680 5.680 16 C 0.530 3.470 17 O -0.461 6.461 18 C 0.111 3.889 19 C -0.102 4.102 20 H 0.086 0.914 21 C 0.163 3.837 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.442 0.558 41 H 0.433 0.567 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 2.650 -26.907 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.354 5.354 6 C 0.315 3.685 7 O -0.411 6.411 8 C -0.173 4.173 9 C -0.146 4.146 10 C -0.016 4.016 11 H 0.151 0.849 12 N -0.387 5.387 13 C 0.404 3.596 14 O -0.417 6.417 15 N -0.352 5.352 16 C 0.315 3.685 17 O -0.329 6.329 18 C -0.011 4.011 19 C -0.122 4.122 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.377 5.377 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.276 0.724 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.221 2.580 -26.749 27.066 hybrid contribution 0.285 0.401 0.893 1.019 sum -2.936 2.981 -25.856 26.192 Atomic orbital electron populations 1.21729 0.93804 1.02028 1.02175 1.22231 0.96067 0.99749 0.94020 0.89797 1.22584 0.83268 0.98573 0.97563 1.48853 1.08077 1.65976 1.12446 1.20061 0.82326 0.78227 0.87888 1.90776 1.29696 1.47475 1.73159 1.21599 0.98548 1.03678 0.93520 1.21592 0.97696 1.05195 0.90076 1.22204 0.96930 0.83063 0.99433 0.84931 1.45597 1.22401 1.08303 1.62398 1.15845 0.80656 0.84489 0.78602 1.91079 1.77968 1.14314 1.58350 1.44331 1.23855 1.09568 1.57416 1.20751 0.87264 0.83331 0.77160 1.90880 1.61788 1.26687 1.53529 1.22185 1.00323 0.98780 0.79853 1.22386 0.96582 0.97969 0.95256 0.89524 1.20689 0.96107 0.92805 0.86871 1.42371 1.77103 1.05708 1.12507 1.19244 1.34615 0.91236 0.92009 0.91192 1.24742 1.02181 0.95476 0.98514 1.69660 1.53297 1.04188 1.30924 0.86125 0.78221 0.78585 0.83304 1.20576 1.21863 1.21830 0.91726 0.92686 0.92404 0.90510 0.90778 0.88315 0.88889 0.89425 0.88037 0.71343 0.72426 0.91771 0.89105 0.96362 0.96061 0.78252 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.17 37.16 0.34 -0.83 16 2 C -0.10 -1.03 3.18 -88.93 -0.28 -1.31 16 3 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 4 C 0.10 0.86 6.38 -2.32 -0.01 0.84 16 5 N -0.62 -7.60 3.29 -169.98 -0.56 -8.16 16 6 C 0.53 6.60 7.89 -10.98 -0.09 6.51 16 7 O -0.53 -9.38 16.32 5.55 0.09 -9.29 16 8 C -0.13 -0.85 4.57 -27.88 -0.13 -0.98 16 9 C -0.11 -0.74 4.25 -26.73 -0.11 -0.85 16 10 C 0.09 0.43 3.65 -68.20 -0.25 0.18 16 11 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 12 N -0.72 -3.46 6.06 -59.19 -0.36 -3.81 16 13 C 0.70 5.50 8.99 -88.02 -0.79 4.70 16 14 O -0.54 -6.37 18.04 5.33 0.10 -6.28 16 15 N -0.68 -4.33 5.70 -15.79 -0.09 -4.42 16 16 C 0.53 3.76 8.14 -10.55 -0.09 3.67 16 17 O -0.46 -4.74 18.02 5.60 0.10 -4.64 16 18 C 0.11 1.73 6.31 -2.98 -0.02 1.71 16 19 C -0.10 -1.48 2.65 -89.25 -0.24 -1.72 16 20 H 0.09 1.26 7.85 -51.93 -0.41 0.86 16 21 C 0.16 3.13 5.34 -4.05 -0.02 3.11 16 22 N -0.73 -18.23 5.33 -59.91 -0.32 -18.55 16 23 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 24 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 27 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.08 0.41 7.24 -51.93 -0.38 0.03 16 35 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 36 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.09 0.39 7.45 -51.93 -0.39 0.01 16 38 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.44 1.28 8.61 -40.82 -0.35 0.93 16 41 H 0.43 2.07 8.96 -40.82 -0.37 1.71 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.81 7.49 -51.93 -0.39 1.42 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.38 10.02 7.51 -40.82 -0.31 9.71 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -38.00 391.16 -8.55 -46.56 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.18 Total: 4.99 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -1.93 Total: 7.70 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.60 Total: -62.52 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.29 Total: -20.21 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.00 -8.55 -46.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106962817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.008 kcal (2) G-P(sol) polarization free energy of solvation -38.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds