Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.53965 * 307.82762 * 10 9 8 12 12 N 1.47317 * 110.59783 * 70.82956 * 10 9 8 13 13 C 1.34528 * 106.61865 * 118.52479 * 12 10 9 14 14 O 1.21537 * 123.76968 * 179.97438 * 13 12 10 15 15 N 1.33788 * 112.45823 * 359.97438 * 13 12 10 16 16 C 1.34769 * 111.65009 * 0.02562 * 15 13 12 17 17 O 1.21228 * 127.16012 * 179.97438 * 16 15 13 18 18 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 19 19 C 1.54004 * 107.08487 * 334.78016 * 18 5 4 20 20 H 1.09003 * 110.32797 * 120.19357 * 19 18 5 21 21 C 1.52991 * 110.32869 * 242.41494 * 19 18 5 22 22 N 1.46501 * 109.46985 * 293.54194 * 21 19 18 23 23 C 1.36940 * 119.99962 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99982 * 0.02562 * 23 22 21 25 25 C 1.38815 * 119.99775 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00268 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99829 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47448 * 0.02562 * 27 25 23 29 29 H 1.48491 * 109.47203 * 120.00408 * 27 25 23 30 30 H 1.48503 * 109.47359 * 240.00465 * 27 25 23 31 31 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 32 32 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 33 33 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 34 34 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 35 35 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 38 38 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 39 39 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 40 40 H 0.97002 * 126.68927 * 298.50308 * 12 10 9 41 41 H 0.97002 * 124.17402 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.91504 * 94.14277 * 18 5 4 43 43 H 1.08998 * 109.91568 * 215.23013 * 18 5 4 44 44 H 1.08996 * 109.47677 * 53.54683 * 21 19 18 45 45 H 1.08998 * 109.47257 * 173.54816 * 21 19 18 46 46 H 0.97004 * 120.00248 * 0.02562 * 22 21 19 47 47 H 0.96993 * 120.00144 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9215 -0.9740 -3.5516 10 6 5.8834 -0.5666 -5.0258 11 1 5.0982 -1.1091 -5.5523 12 7 5.6901 0.8880 -5.1567 13 6 6.7761 1.3649 -5.7915 14 8 6.9395 2.5384 -6.0620 15 7 7.6561 0.4029 -6.0917 16 6 7.2293 -0.8074 -5.6804 17 8 7.8024 -1.8681 -5.8075 18 6 3.2903 -1.5681 0.6639 19 6 2.0776 -0.7917 1.2100 20 1 1.3221 -1.4831 1.5833 21 6 2.5158 0.1675 2.3183 22 7 2.9846 -0.6023 3.4733 23 6 3.4303 0.0468 4.5936 24 1 3.4359 1.1263 4.6259 25 6 3.8749 -0.6827 5.6877 26 7 3.8685 -1.9982 5.6482 27 14 4.4823 0.2029 7.2162 28 1 4.3877 1.6702 7.0088 29 1 3.6457 -0.1870 8.3795 30 1 5.8959 -0.1706 7.4759 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5626 -0.8599 33 1 -0.3633 -1.0261 -0.0573 34 1 2.1524 -0.1478 -2.0871 35 1 1.4612 -1.6600 -1.4145 36 1 3.8299 -1.4860 -3.4873 37 1 4.1896 0.1964 -3.0308 38 1 6.6135 -0.3265 -3.0130 39 1 6.2538 -2.0089 -3.4695 40 1 4.9282 1.4017 -4.8460 41 1 8.4975 0.5576 -6.5490 42 1 3.1179 -2.6402 0.7584 43 1 4.1908 -1.2876 1.2101 44 1 3.3234 0.8013 1.9521 45 1 1.6717 0.7899 2.6150 46 1 2.9799 -1.5719 3.4441 47 1 4.1795 -2.5079 6.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106962817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = -107.712254 kcal Electronic energy + Delta-G solvation = -29146.820862 eV Core-core repulsion = 24942.958985 eV Total energy + Delta-G solvation = -4203.861877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.36790 -41.17782 -39.73764 -39.19918 -37.51602 -36.45056 -35.62046 -34.18149 -33.19488 -33.05816 -30.76253 -28.99801 -27.15458 -27.04101 -25.24240 -24.31754 -23.59198 -22.46440 -22.25030 -20.95988 -20.16426 -19.41596 -19.19079 -18.08371 -17.99226 -17.50743 -17.26773 -16.90668 -16.76750 -16.67489 -16.26560 -16.04403 -15.46433 -15.34734 -15.25219 -15.14712 -14.84916 -14.46789 -13.97877 -13.85147 -13.70095 -13.45761 -13.32443 -13.11764 -12.99425 -12.78617 -12.74431 -12.48507 -12.22053 -12.11744 -12.02887 -11.96627 -11.81207 -11.49693 -11.45000 -11.38974 -11.33436 -10.99516 -10.87322 -10.51530 -9.67877 -9.03248 -7.98618 -5.27429 0.52344 1.43664 1.43802 1.45357 1.55013 1.66888 1.94568 1.99212 2.20098 2.52817 2.93665 3.34047 3.36440 3.57741 3.67327 3.80297 3.85170 3.87744 4.16722 4.24408 4.28948 4.31090 4.37940 4.50651 4.56469 4.59906 4.67468 4.73005 4.81042 4.92468 4.94568 4.99190 5.04692 5.05955 5.12512 5.18423 5.26314 5.31102 5.42827 5.46091 5.61908 5.82617 5.88489 6.24087 6.38096 6.64470 7.12921 7.19817 7.30119 8.06174 8.28400 9.25185 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.002243 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.807794 B =12481.459748 C =13294.343050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.082 0.918 4 C 0.105 3.895 5 N -0.620 5.620 6 C 0.514 3.486 7 O -0.600 6.600 8 C -0.119 4.119 9 C -0.103 4.103 10 C 0.110 3.890 11 H 0.180 0.820 12 N -0.701 5.701 13 C 0.704 3.296 14 O -0.585 6.585 15 N -0.676 5.676 16 C 0.529 3.471 17 O -0.496 6.496 18 C 0.114 3.886 19 C -0.094 4.094 20 H 0.086 0.914 21 C 0.163 3.837 22 N -0.746 5.746 23 C -0.245 4.245 24 H 0.074 0.926 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.973 3.027 28 H -0.266 1.266 29 H -0.289 1.289 30 H -0.296 1.296 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.454 0.546 41 H 0.438 0.562 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.006 0.994 45 H 0.028 0.972 46 H 0.373 0.627 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 3.857 -29.517 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.101 0.899 4 C -0.015 4.015 5 N -0.353 5.353 6 C 0.305 3.695 7 O -0.482 6.482 8 C -0.158 4.158 9 C -0.142 4.142 10 C 0.002 3.998 11 H 0.197 0.803 12 N -0.367 5.367 13 C 0.403 3.597 14 O -0.462 6.462 15 N -0.346 5.346 16 C 0.316 3.684 17 O -0.367 6.367 18 C -0.010 4.010 19 C -0.113 4.113 20 H 0.104 0.896 21 C 0.037 3.963 22 N -0.388 5.388 23 C -0.377 4.377 24 H 0.092 0.908 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.802 3.198 28 H -0.190 1.190 29 H -0.216 1.216 30 H -0.223 1.223 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.302 0.698 41 H 0.281 0.719 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.955 3.836 -29.395 30.236 hybrid contribution 1.133 0.035 1.705 2.047 sum -4.822 3.871 -27.689 28.372 Atomic orbital electron populations 1.21705 0.91842 1.02918 1.02763 1.22245 0.97538 0.99145 0.92354 0.89944 1.22911 0.80710 0.99965 0.97963 1.48998 1.10035 1.65514 1.10723 1.21321 0.81171 0.76809 0.90150 1.90753 1.32165 1.50342 1.74900 1.21684 0.98918 1.06490 0.88718 1.21465 0.97847 1.03685 0.91227 1.22207 0.96693 0.83039 0.97902 0.80336 1.45521 1.21766 1.08346 1.61084 1.15958 0.81216 0.83923 0.78591 1.91058 1.78878 1.16035 1.60248 1.44320 1.24004 1.09335 1.56973 1.21130 0.87937 0.82745 0.76624 1.90871 1.62931 1.27874 1.55038 1.21852 0.98309 0.98493 0.82305 1.22268 0.96010 0.97449 0.95599 0.89575 1.20836 0.95456 0.93415 0.86615 1.42607 1.77158 1.05577 1.13494 1.19651 1.33501 0.91609 0.92947 0.90819 1.25584 1.03293 0.96260 1.01734 1.69816 1.54906 1.05646 1.31627 0.85083 0.77053 0.78196 0.79501 1.18998 1.21587 1.22322 0.93361 0.89605 0.91697 0.85662 0.88611 0.83816 0.85424 0.92156 0.89737 0.69809 0.71913 0.92550 0.94609 0.97592 0.95363 0.79469 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.17 71.98 0.66 -1.06 16 2 C -0.09 -1.60 3.18 -9.70 -0.03 -1.64 16 3 H 0.08 1.48 7.86 -2.39 -0.02 1.47 16 4 C 0.11 1.25 6.38 86.61 0.55 1.80 16 5 N -0.62 -14.16 3.29 -810.08 -2.67 -16.83 16 6 C 0.51 12.23 7.89 87.66 0.69 12.92 16 7 O -0.60 -22.04 16.32 -3.04 -0.05 -22.09 16 8 C -0.12 -1.01 4.57 29.85 0.14 -0.87 16 9 C -0.10 -1.21 4.25 30.59 0.13 -1.08 16 10 C 0.11 0.64 3.65 44.37 0.16 0.80 16 11 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 12 N -0.70 -4.29 6.06 -459.59 -2.79 -7.08 16 13 C 0.70 9.78 8.99 179.44 1.61 11.39 16 14 O -0.59 -13.19 18.04 -3.83 -0.07 -13.26 16 15 N -0.68 -7.89 5.70 -441.12 -2.52 -10.41 16 16 C 0.53 6.74 8.14 87.94 0.72 7.45 16 17 O -0.50 -9.98 18.02 -2.87 -0.05 -10.03 16 18 C 0.11 3.70 6.31 86.53 0.55 4.24 16 19 C -0.09 -2.69 2.65 -9.91 -0.03 -2.72 16 20 H 0.09 2.49 7.85 -2.39 -0.02 2.47 16 21 C 0.16 6.40 5.34 86.38 0.46 6.86 16 22 N -0.75 -38.55 5.33 -343.47 -1.83 -40.38 16 23 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 26 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 27 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 30 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.76 8.11 -2.38 -0.02 0.74 16 34 H 0.13 0.38 7.24 -2.38 -0.02 0.36 16 35 H 0.10 0.83 8.02 -2.39 -0.02 0.81 16 36 H 0.14 0.07 8.14 -2.38 -0.02 0.05 16 37 H 0.13 0.28 7.45 -2.39 -0.02 0.26 16 38 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 40 H 0.45 0.57 8.61 -92.71 -0.80 -0.23 16 41 H 0.44 4.06 8.96 -92.71 -0.83 3.22 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.54 7.49 -2.39 -0.02 1.52 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.37 20.54 7.51 -92.71 -0.70 19.84 16 47 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -91.23 391.16 -2.04 -93.28 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -1.30 Total: 17.13 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.92 Total: 20.84 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -9.52 Total: -135.23 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.17 Total: -45.37 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -91.23 -2.04 -93.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106962817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.435 kcal (2) G-P(sol) polarization free energy of solvation -91.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds