Wall clock time and date at job start Tue Mar 31 2020 21:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47179 * 2 1 4 4 O 1.21285 * 119.99986 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00240 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47229 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99870 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99758 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99619 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.85385 * 31.21233 * 10 9 7 12 12 C 1.54619 * 110.96855 * 267.37634 * 10 9 7 13 13 C 1.51294 * 104.25793 * 266.46050 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46605 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47103 * 119.99755 * 23 21 19 26 26 H 1.48496 * 109.47077 * 240.00020 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47269 * 299.99882 * 1 2 3 31 31 H 1.08999 * 109.46899 * 60.00276 * 1 2 3 32 32 H 1.09002 * 109.47034 * 239.99758 * 2 1 3 33 33 H 1.09002 * 109.47259 * 120.00395 * 2 1 3 34 34 H 0.97003 * 119.99854 * 359.97438 * 5 3 2 35 35 H 1.09002 * 109.47545 * 59.99815 * 6 5 3 36 36 H 1.09002 * 109.47047 * 300.00268 * 6 5 3 37 37 H 0.96997 * 120.00527 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.49280 * 25.35844 * 12 10 9 39 39 H 1.09005 * 110.48774 * 148.00534 * 12 10 9 40 40 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 41 41 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 42 42 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 43 43 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 45 45 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 46 46 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 47 47 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3528 3.0482 0.0010 8 8 5.9591 1.9979 0.0009 9 7 6.0266 4.2154 0.0019 10 6 7.4917 4.2154 0.0024 11 1 7.8798 3.3446 -0.5259 12 6 8.0446 4.2805 1.4449 13 6 8.2624 5.7568 1.6942 14 8 8.4248 6.2604 2.7855 15 7 8.2467 6.4292 0.5304 16 6 8.4160 7.8796 0.4115 17 6 7.7116 8.6790 1.5227 18 7 8.9847 8.5708 2.2659 19 6 9.3280 8.6106 3.5910 20 1 10.3617 8.5016 3.8845 21 6 8.3476 8.7909 4.5569 22 7 7.0879 8.9232 4.1992 23 14 8.8160 8.8458 6.3644 24 1 10.2846 8.6735 6.5005 25 1 8.4152 10.1547 6.9400 26 1 8.1204 7.7524 7.0894 27 6 9.7364 8.4005 1.0074 28 6 8.0447 5.5231 -0.6062 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9878 0.9298 0.0013 35 1 3.4822 3.5619 0.8911 36 1 3.4827 3.5623 -0.8889 37 1 5.5417 5.0555 0.0024 38 1 7.3194 3.8747 2.1502 39 1 8.9897 3.7421 1.5159 40 1 8.2114 8.2503 -0.5929 41 1 7.4558 9.6988 1.2355 42 1 6.8827 8.1464 1.9890 43 1 6.4027 9.0496 4.8742 44 1 10.5212 7.6460 1.0630 45 1 10.0766 9.3384 0.5685 46 1 7.3238 5.9487 -1.3044 47 1 8.9920 5.3346 -1.1114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108523888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:29 Heat of formation + Delta-G solvation = -20.501779 kcal Electronic energy + Delta-G solvation = -29826.642243 eV Core-core repulsion = 25626.562096 eV Total energy + Delta-G solvation = -4200.080147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77222 -40.06550 -39.22874 -37.14598 -35.96188 -34.72748 -33.85253 -33.12047 -31.93644 -30.35230 -28.39218 -27.37823 -26.78740 -24.73637 -24.34196 -23.28680 -21.81118 -20.89367 -20.66713 -20.27727 -18.13648 -17.74083 -17.17055 -16.67667 -16.55858 -16.34823 -16.03466 -15.81149 -15.45188 -14.79891 -14.65630 -14.40759 -14.08892 -13.92296 -13.71924 -13.47956 -13.38067 -13.26618 -12.80707 -12.64537 -12.52956 -12.44928 -12.08321 -12.01214 -11.72829 -11.61595 -11.50243 -11.16742 -11.07726 -10.69286 -10.47052 -10.29513 -10.20433 -10.08483 -9.69573 -9.55121 -9.42412 -9.33863 -8.76434 -8.39036 -7.94061 -6.56966 -5.48373 -2.75272 2.21380 2.35190 2.47039 3.13673 3.45325 3.50420 3.54497 3.59023 3.61095 4.25942 4.40137 4.47438 4.60826 4.68225 4.73700 4.74174 4.91500 4.99110 5.06001 5.17637 5.22576 5.27251 5.45191 5.46725 5.50717 5.59720 5.62914 5.70151 5.74849 5.87234 5.93654 5.96647 5.99705 6.21349 6.32830 6.53432 6.57045 6.92308 7.12110 7.16912 7.30630 7.54124 7.76281 7.80559 7.87773 7.90612 8.22978 9.13772 9.29242 10.01051 10.83738 11.70847 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.002567 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.261251 B =10902.992450 C =11920.864011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.541 6.541 5 N -0.721 5.721 6 C 0.097 3.903 7 C 0.515 3.485 8 O -0.540 6.540 9 N -0.711 5.711 10 C 0.134 3.866 11 H 0.114 0.886 12 C -0.168 4.168 13 C 0.487 3.513 14 O -0.421 6.421 15 N -0.610 5.610 16 C 0.103 3.897 17 C 0.157 3.843 18 N -0.588 5.588 19 C -0.182 4.182 20 H 0.070 0.930 21 C -0.001 4.001 22 N -0.923 5.923 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.294 1.294 27 C 0.103 3.897 28 C 0.104 3.896 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.409 0.591 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.245 0.755 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.078 0.922 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -16.452 -16.251 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.417 6.417 5 N -0.377 5.377 6 C -0.030 4.030 7 C 0.300 3.700 8 O -0.417 6.417 9 N -0.363 5.363 10 C 0.029 3.971 11 H 0.132 0.868 12 C -0.210 4.210 13 C 0.270 3.730 14 O -0.286 6.286 15 N -0.348 5.348 16 C -0.001 4.001 17 C 0.031 3.969 18 N -0.314 5.314 19 C -0.310 4.310 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.224 1.224 26 H -0.222 1.222 27 C -0.024 4.024 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.250 0.750 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.244 0.756 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.670 -16.153 -15.237 23.185 hybrid contribution 0.439 0.192 0.960 1.073 sum -6.231 -15.961 -14.277 22.302 Atomic orbital electron populations 1.21540 0.92847 1.01680 1.03471 1.21617 0.98712 0.93308 1.04623 1.20843 0.81508 0.92199 0.75522 1.90730 1.55273 1.46531 1.49188 1.45766 1.07737 1.08129 1.76022 1.21072 0.90867 0.85805 1.05267 1.20476 0.89715 0.84072 0.75699 1.90695 1.69921 1.31124 1.49956 1.45900 1.07095 1.08808 1.74508 1.21861 0.79397 0.99034 0.96788 0.86849 1.22839 1.03504 0.97454 0.97160 1.20695 0.79157 0.87936 0.85239 1.91191 1.42030 1.71877 1.23503 1.47850 1.74711 1.05842 1.06430 1.22939 0.99532 0.78991 0.98603 1.22556 0.92704 0.94972 0.86662 1.45594 1.02067 1.84283 0.99446 1.18684 0.92436 1.40099 0.79807 0.91267 1.24499 0.95309 1.02993 0.96838 1.69776 0.99044 1.57336 1.31014 0.86187 0.77179 0.76768 0.86453 1.20944 1.22380 1.22163 1.22982 0.94229 0.96767 0.88471 1.22161 1.00857 0.89127 0.89949 0.91988 0.91870 0.91946 0.88747 0.88681 0.75015 0.87976 0.88161 0.75573 0.88604 0.87891 0.90272 0.95111 0.90500 0.94528 0.94269 0.94430 0.90410 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.58 16 2 C -0.14 -0.88 6.42 -27.88 -0.18 -1.06 16 3 C 0.51 4.97 7.83 -10.99 -0.09 4.89 16 4 O -0.54 -7.32 15.98 5.55 0.09 -7.23 16 5 N -0.72 -6.33 5.53 -61.48 -0.34 -6.67 16 6 C 0.10 0.86 6.15 -5.20 -0.03 0.83 16 7 C 0.51 5.13 7.90 -10.98 -0.09 5.05 16 8 O -0.54 -6.71 15.31 5.56 0.09 -6.63 16 9 N -0.71 -6.68 5.12 -52.23 -0.27 -6.95 16 10 C 0.13 1.37 3.53 -66.30 -0.23 1.13 16 11 H 0.11 1.06 7.54 -51.93 -0.39 0.67 16 12 C -0.17 -2.31 6.58 -26.74 -0.18 -2.49 16 13 C 0.49 9.18 7.49 -10.86 -0.08 9.10 16 14 O -0.42 -10.75 13.05 5.55 0.07 -10.68 16 15 N -0.61 -9.51 3.16 -166.63 -0.53 -10.03 16 16 C 0.10 1.80 4.93 -70.14 -0.35 1.46 16 17 C 0.16 3.64 6.57 -2.84 -0.02 3.62 16 18 N -0.59 -15.22 2.18 -177.87 -0.39 -15.61 16 19 C -0.18 -5.35 8.88 -15.06 -0.13 -5.49 16 20 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 21 C 0.00 -0.04 5.36 -17.43 -0.09 -0.13 16 22 N -0.92 -28.45 11.39 55.49 0.63 -27.82 16 23 Si 0.90 23.88 29.55 -169.99 -5.02 18.85 16 24 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 27 C 0.10 2.09 8.51 -2.96 -0.03 2.07 16 28 C 0.10 1.04 6.97 -3.13 -0.02 1.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.41 3.24 7.44 -40.82 -0.30 2.94 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.41 3.45 8.66 -40.82 -0.35 3.10 16 38 H 0.10 1.43 8.09 -51.93 -0.42 1.01 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 2.03 6.78 -51.93 -0.35 1.68 16 43 H 0.24 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -39.11 387.41 -8.28 -47.39 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.28 Total: 0.12 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: -1.17 Total: 19.41 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.89 Total: -67.07 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.25 Total: -24.54 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.11 -8.28 -47.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108523888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.884 kcal (2) G-P(sol) polarization free energy of solvation -39.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds