Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.52990 * 109.47023 * 120.00385 * 2 1 3 5 5 C 1.50701 * 109.47366 * 294.99597 * 4 2 1 6 6 N 1.34778 * 120.00253 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99729 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 9 9 O 1.21283 * 119.99488 * 239.99768 * 8 2 1 10 10 N 1.34777 * 120.00290 * 60.00208 * 8 2 1 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 2 12 12 H 1.08999 * 110.85849 * 322.38622 * 11 10 8 13 13 C 1.54629 * 110.97217 * 86.17660 * 11 10 8 14 14 C 1.51277 * 104.19793 * 142.91646 * 13 11 10 15 15 O 1.21275 * 124.94482 * 163.71282 * 14 13 11 16 16 N 1.34426 * 110.11291 * 343.74648 * 14 13 11 17 17 C 1.46507 * 124.34873 * 179.57416 * 16 14 13 18 18 C 1.53950 * 113.74158 * 38.71386 * 17 16 14 19 19 N 1.47816 * 86.03479 * 222.08661 * 18 17 16 20 20 C 1.36935 * 134.45396 * 204.64485 * 19 18 17 21 21 H 1.08000 * 119.99769 * 179.87013 * 20 19 18 22 22 C 1.38815 * 120.00104 * 359.86333 * 20 19 18 23 23 N 1.31624 * 119.99919 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46974 * 60.00720 * 24 22 20 26 26 H 1.48496 * 109.46764 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47058 * 300.00301 * 24 22 20 28 28 C 1.47578 * 91.04861 * 24.55149 * 19 18 17 29 29 C 1.46759 * 111.30163 * 359.59513 * 16 14 13 30 30 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 31 31 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 32 32 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47600 * 54.99915 * 4 2 1 34 34 H 1.09006 * 109.46934 * 174.99956 * 4 2 1 35 35 H 0.96996 * 120.00125 * 0.02562 * 6 5 4 36 36 H 0.96997 * 119.99401 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99727 * 359.97438 * 10 8 2 38 38 H 1.09002 * 110.48693 * 261.59262 * 13 11 10 39 39 H 1.08996 * 110.48753 * 24.10266 * 13 11 10 40 40 H 1.08992 * 112.94174 * 170.30947 * 17 16 14 41 41 H 1.09002 * 113.76966 * 336.34915 * 18 17 16 42 42 H 1.08995 * 113.77085 * 107.74730 * 18 17 16 43 43 H 0.96997 * 120.00190 * 179.97438 * 23 22 20 44 44 H 1.09002 * 113.76664 * 221.15079 * 28 19 18 45 45 H 1.08996 * 113.77137 * 89.76187 * 28 19 18 46 46 H 1.09004 * 110.24294 * 258.01920 * 29 16 14 47 47 H 1.08991 * 110.24805 * 136.01676 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 7 1.9854 -0.3916 3.7001 7 8 1.0110 1.0869 2.3633 8 6 2.0323 -0.7103 -1.2306 9 8 2.7295 -1.6964 -1.1193 10 7 1.7067 -0.2498 -2.4546 11 6 2.1900 -0.9439 -3.6508 12 1 3.2059 -1.3102 -3.5031 13 6 1.2378 -2.0970 -4.0442 14 6 1.2363 -2.0773 -5.5569 15 8 0.8452 -2.9823 -6.2630 16 7 1.7324 -0.9108 -6.0044 17 6 1.8810 -0.5646 -7.4202 18 6 0.7175 -1.0516 -8.3028 19 7 1.7562 -1.4360 -9.2818 20 6 1.7755 -1.6139 -10.6394 21 1 2.6915 -1.9035 -11.1330 22 6 0.6180 -1.4223 -11.3812 23 7 -0.4982 -1.0690 -10.7796 24 14 0.6446 -1.6644 -13.2332 25 1 1.0427 -3.0608 -13.5442 26 1 -0.7079 -1.3999 -13.7864 27 1 1.6201 -0.7243 -13.8413 28 6 2.7637 -1.5484 -8.2094 29 6 2.1065 -0.0289 -4.8926 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2950 34 1 3.1263 -0.7995 1.2054 35 1 2.4898 -1.2151 3.7906 36 1 1.7285 0.1092 4.4900 37 1 1.1488 0.5387 -2.5436 38 1 1.6191 -3.0493 -3.6755 39 1 0.2355 -1.9129 -3.6573 40 1 2.1423 0.4819 -7.5765 41 1 0.1732 -1.8983 -7.8845 42 1 0.0623 -0.2514 -8.6470 43 1 -1.3070 -0.9347 -11.2979 44 1 3.7394 -1.1441 -8.4791 45 1 2.8220 -2.5414 -7.7636 46 1 1.3448 0.7371 -4.7461 47 1 3.0745 0.4329 -5.0867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108559839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = -46.798919 kcal Electronic energy + Delta-G solvation = -29233.442629 eV Core-core repulsion = 25032.222152 eV Total energy + Delta-G solvation = -4201.220477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93667 -40.26757 -39.39934 -37.26464 -36.43190 -34.65446 -34.16912 -34.04609 -32.14421 -30.34518 -28.33611 -27.55551 -27.05637 -24.73236 -24.59264 -23.35924 -21.94996 -21.08748 -20.53259 -20.03534 -18.30955 -18.13250 -17.66260 -16.97559 -16.70728 -16.44811 -16.18960 -16.03343 -15.52776 -15.18626 -14.72436 -14.67885 -14.27547 -13.97285 -13.85850 -13.53392 -13.50374 -13.43479 -13.29669 -13.01864 -12.42597 -12.38469 -12.04062 -11.84014 -11.66871 -11.57729 -11.53919 -11.37755 -11.14840 -10.82072 -10.70360 -10.40795 -10.25119 -10.17506 -10.03763 -9.96841 -9.67693 -9.47392 -9.15427 -8.64883 -8.18014 -6.80171 -5.70764 -3.02648 2.16489 2.28625 2.58136 2.93236 3.12915 3.33032 3.43963 3.48225 3.49597 4.07262 4.20542 4.41937 4.46085 4.52821 4.53402 4.64079 4.81479 4.88714 4.96291 5.17780 5.22670 5.24985 5.35197 5.38269 5.46046 5.55194 5.61143 5.66273 5.66930 5.70852 5.85962 5.89064 6.12796 6.28414 6.30459 6.53357 6.59514 6.80593 6.88433 7.11125 7.30166 7.49640 7.59592 7.64183 7.77024 7.85910 8.02637 8.55838 9.09896 9.76117 10.65304 11.46496 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.040440 B = 0.001860 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.216980 B =15052.164938 C =15196.050448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 H 0.107 0.893 4 C -0.126 4.126 5 C 0.518 3.482 6 N -0.857 5.857 7 O -0.542 6.542 8 C 0.522 3.478 9 O -0.537 6.537 10 N -0.718 5.718 11 C 0.135 3.865 12 H 0.110 0.890 13 C -0.166 4.166 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.112 3.888 29 C 0.099 3.901 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.403 0.597 36 H 0.401 0.599 37 H 0.405 0.595 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 5.129 30.182 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 H 0.125 0.875 4 C -0.166 4.166 5 C 0.304 3.696 6 N -0.420 5.420 7 O -0.419 6.419 8 C 0.308 3.692 9 O -0.414 6.414 10 N -0.370 5.370 11 C 0.029 3.971 12 H 0.128 0.872 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.382 6.382 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.016 4.016 29 C -0.026 4.026 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.232 0.768 37 H 0.240 0.760 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.352 4.584 29.165 30.004 hybrid contribution -0.124 -0.025 -0.599 0.612 sum 5.229 4.559 28.566 29.396 Atomic orbital electron populations 1.21937 0.92052 1.02706 1.04245 1.21005 0.98484 1.00988 0.91086 0.87450 1.21469 1.04033 1.00196 0.90908 1.20680 0.78315 0.85304 0.85314 1.43896 1.60133 1.29689 1.08327 1.90731 1.39727 1.24661 1.86749 1.20614 0.79630 0.84401 0.84550 1.90724 1.37724 1.26086 1.86821 1.45934 1.53976 1.32051 1.05054 1.21806 0.99262 0.92145 0.83856 0.87171 1.22821 1.02069 1.01226 0.94690 1.20602 0.77317 0.82180 0.89790 1.90791 1.46596 1.38442 1.62325 1.48503 1.62992 1.16320 1.06312 1.24085 1.01867 0.99301 0.75169 1.22786 0.91212 0.98425 0.84844 1.45695 1.06430 1.80131 1.00848 1.18945 0.95788 1.40380 0.79731 0.90240 1.24799 0.95409 1.02089 0.98157 1.69818 0.99897 1.52713 1.34259 0.86173 0.76627 0.77978 0.84817 1.21177 1.21565 1.21097 1.22922 0.93510 0.96449 0.88689 1.22193 1.01747 0.93094 0.85560 0.89506 0.91929 0.92386 0.87893 0.87755 0.76855 0.76813 0.75983 0.87878 0.87841 0.87630 0.92616 0.91160 0.93616 0.93942 0.94220 0.90850 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.83 37.16 0.33 -0.62 16 2 C -0.09 -0.60 2.37 -91.77 -0.22 -0.82 16 3 H 0.11 0.64 7.96 -51.93 -0.41 0.23 16 4 C -0.13 -0.70 4.52 -27.89 -0.13 -0.83 16 5 C 0.52 3.26 7.82 -10.98 -0.09 3.17 16 6 N -0.86 -2.58 8.87 31.22 0.28 -2.30 16 7 O -0.54 -5.36 14.80 5.55 0.08 -5.28 16 8 C 0.52 4.34 7.15 -10.98 -0.08 4.26 16 9 O -0.54 -6.27 15.66 5.55 0.09 -6.18 16 10 N -0.72 -5.07 5.08 -52.23 -0.27 -5.34 16 11 C 0.13 1.25 3.42 -66.30 -0.23 1.02 16 12 H 0.11 1.11 7.73 -51.93 -0.40 0.70 16 13 C -0.17 -1.98 6.59 -26.74 -0.18 -2.16 16 14 C 0.52 8.74 7.42 -10.86 -0.08 8.66 16 15 O -0.51 -11.38 14.61 5.56 0.08 -11.29 16 16 N -0.61 -9.26 3.16 -166.64 -0.53 -9.78 16 17 C 0.10 1.87 4.81 -70.14 -0.34 1.53 16 18 C 0.15 3.84 6.90 -2.83 -0.02 3.82 16 19 N -0.60 -16.41 3.70 -177.87 -0.66 -17.07 16 20 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -28.27 11.39 55.49 0.63 -27.64 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.11 2.45 8.44 -2.97 -0.03 2.42 16 29 C 0.10 0.96 7.07 -3.13 -0.02 0.94 16 30 H 0.09 0.66 5.95 -51.93 -0.31 0.35 16 31 H 0.06 0.32 7.56 -51.92 -0.39 -0.07 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.54 7.96 -51.93 -0.41 0.12 16 35 H 0.40 0.18 8.83 -40.82 -0.36 -0.18 16 36 H 0.40 0.94 8.93 -40.82 -0.36 0.58 16 37 H 0.40 1.91 7.78 -40.82 -0.32 1.59 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.06 1.54 5.72 -51.93 -0.30 1.25 16 42 H 0.07 1.90 7.16 -51.93 -0.37 1.52 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.93 7.25 -51.93 -0.38 0.55 16 46 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -39.55 383.35 -7.78 -47.33 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.92 Total: -0.45 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -1.32 Total: 14.44 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.54 Total: -62.13 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.25 Total: -22.76 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.55 -7.78 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108559839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.535 kcal (2) G-P(sol) polarization free energy of solvation -39.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds