Wall clock time and date at job start Tue Mar 31 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99741 * 2 1 4 4 O 1.20826 * 120.00221 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99609 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.51061 * 55.08185 * 5 3 2 7 7 C 1.53094 * 109.50639 * 294.99005 * 5 3 2 8 8 N 1.47016 * 109.26168 * 183.17501 * 7 5 3 9 9 C 1.38579 * 111.00148 * 182.39693 * 8 7 5 10 10 N 1.31220 * 126.47330 * 296.46351 * 9 8 7 11 11 N 1.28520 * 109.86366 * 180.02562 * 10 9 8 12 12 C 1.30305 * 110.05192 * 359.71985 * 11 10 9 13 13 C 1.50698 * 126.34515 * 180.31358 * 12 11 10 14 14 C 1.52995 * 109.47140 * 270.14864 * 13 12 11 15 15 C 1.50698 * 109.47398 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99552 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00280 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99867 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99938 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47278 * 59.99701 * 19 17 15 21 21 H 1.48504 * 109.46976 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46984 * 299.99544 * 19 17 15 23 23 N 1.36446 * 126.47419 * 116.50802 * 9 8 7 24 24 C 1.46499 * 127.13646 * 359.96274 * 23 9 8 25 25 C 1.47014 * 110.75128 * 58.61931 * 8 7 5 26 26 C 1.53101 * 109.25838 * 301.38723 * 25 8 7 27 27 H 1.09004 * 109.54189 * 296.89002 * 26 25 8 28 28 C 1.53000 * 109.50950 * 176.78438 * 26 25 8 29 29 O 1.43015 * 109.25886 * 56.84344 * 26 25 8 30 30 H 1.08998 * 109.46738 * 300.00173 * 1 2 3 31 31 H 1.08999 * 109.46697 * 60.00246 * 1 2 3 32 32 H 1.08996 * 109.46512 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.50560 * 63.24286 * 7 5 3 34 34 H 1.08999 * 109.51097 * 303.11183 * 7 5 3 35 35 H 1.08994 * 109.47541 * 30.15487 * 13 12 11 36 36 H 1.09001 * 109.46705 * 150.15088 * 13 12 11 37 37 H 1.09008 * 109.47431 * 300.00900 * 14 13 12 38 38 H 1.09001 * 109.47139 * 60.00490 * 14 13 12 39 39 H 0.97003 * 120.00295 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47264 * 95.16658 * 24 23 9 41 41 H 1.08996 * 109.47387 * 335.15845 * 24 23 9 42 42 H 1.09003 * 109.47436 * 215.15476 * 24 23 9 43 43 H 1.08999 * 109.50473 * 61.31792 * 25 8 7 44 44 H 1.08991 * 109.50811 * 181.45339 * 25 8 7 45 45 H 1.08995 * 109.46964 * 300.21540 * 28 26 25 46 46 H 1.09001 * 109.46927 * 60.21579 * 28 26 25 47 47 H 1.08994 * 109.47056 * 180.21563 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9603 0.7068 -0.8432 7 6 4.1092 0.6925 1.3071 8 7 5.5716 0.8413 1.3339 9 6 6.1073 0.2767 2.4805 10 7 5.8853 0.6600 3.7157 11 7 6.5440 -0.0856 4.5294 12 6 7.2152 -0.9852 3.8674 13 6 8.1040 -2.0496 4.4572 14 6 9.5306 -1.5110 4.5824 15 6 10.4196 -2.5756 5.1716 16 1 10.0082 -3.5398 5.4312 17 6 11.7580 -2.3183 5.3803 18 7 12.2589 -1.1440 5.0646 19 14 12.8599 -3.6378 6.1113 20 1 12.8574 -4.8306 5.2269 21 1 14.2443 -3.1146 6.2339 22 1 12.3537 -4.0168 7.4550 23 7 6.9658 -0.7823 2.5384 24 6 7.5035 -1.5475 1.4108 25 6 5.9536 2.2559 1.2153 26 6 5.3922 2.8227 -0.0914 27 1 5.8391 2.3003 -0.9373 28 6 5.7177 4.3149 -0.1827 29 8 3.9738 2.6411 -0.1135 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.8497 -0.3642 1.3703 34 1 3.6736 1.2261 2.1518 35 1 7.7327 -2.3277 5.4435 36 1 8.1020 -2.9253 3.8081 37 1 9.9019 -1.2329 3.5960 38 1 9.5326 -0.6353 5.2315 39 1 13.2006 -0.9631 5.2110 40 1 8.4795 -1.1491 1.1337 41 1 6.8246 -1.4691 0.5617 42 1 7.6066 -2.5940 1.6980 43 1 5.5473 2.8145 2.0585 44 1 7.0402 2.3405 1.2115 45 1 5.2718 4.8365 0.6641 46 1 6.7989 4.4525 -0.1659 47 1 5.3145 4.7186 -1.1114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121401193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:24 Heat of formation + Delta-G solvation = -38.687956 kcal Electronic energy + Delta-G solvation = -29878.902861 eV Core-core repulsion = 25678.034102 eV Total energy + Delta-G solvation = -4200.868759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.73240 -41.11527 -39.75554 -36.91709 -36.17269 -34.89707 -33.85447 -33.49316 -31.82007 -30.18850 -28.60990 -27.80334 -27.38304 -26.23958 -25.29483 -24.33495 -22.06388 -21.81880 -21.12780 -20.55813 -19.96242 -18.11423 -17.74516 -17.05081 -16.89622 -16.68528 -16.33982 -16.24405 -16.01349 -15.39549 -15.10717 -14.76680 -14.51467 -14.29300 -13.70585 -13.53666 -13.27049 -13.14250 -13.13018 -12.84762 -12.64550 -12.58462 -12.43089 -12.30777 -12.15038 -11.68628 -11.44568 -11.28206 -11.21155 -11.20412 -11.00779 -10.76099 -10.70736 -10.50239 -10.19493 -10.01422 -9.94167 -9.78578 -9.29149 -9.03650 -8.54954 -8.44775 -6.09296 -4.13792 1.68949 1.86560 1.97208 2.35158 3.13878 3.28199 3.33519 3.35248 3.36935 3.58269 4.16653 4.30044 4.37596 4.39153 4.54535 4.72047 4.76436 4.79954 4.81802 4.84132 4.92652 4.95486 5.13806 5.15391 5.25751 5.26605 5.27150 5.38358 5.40854 5.47122 5.57610 5.61309 5.71169 5.86173 5.89590 6.18204 6.23155 6.26792 6.38069 6.58029 6.59138 6.81216 7.29210 7.33433 7.49847 7.63300 7.87418 8.24689 8.91954 9.03713 9.51056 11.01771 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002373 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.205316 B =11794.130531 C =12629.110240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.480 6.480 5 C 0.110 3.890 6 H 0.109 0.891 7 C 0.042 3.958 8 N -0.455 5.455 9 C 0.311 3.689 10 N -0.305 5.305 11 N -0.296 5.296 12 C 0.221 3.779 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.464 5.464 24 C 0.081 3.919 25 C 0.030 3.970 26 C 0.095 3.905 27 H 0.076 0.924 28 C -0.144 4.144 29 O -0.356 6.356 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 2.857 -16.324 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.364 6.364 5 C 0.050 3.950 6 H 0.127 0.873 7 C -0.086 4.086 8 N -0.180 5.180 9 C -0.045 4.045 10 N -0.150 5.150 11 N -0.136 5.136 12 C -0.046 4.046 13 C -0.072 4.072 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.156 5.156 24 C -0.062 4.062 25 C -0.098 4.098 26 C 0.037 3.963 27 H 0.094 0.906 28 C -0.201 4.201 29 O -0.275 6.275 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.747 3.955 -15.611 24.714 hybrid contribution 0.953 -1.130 -0.133 1.484 sum -17.794 2.826 -15.743 23.926 Atomic orbital electron populations 1.23343 0.75408 1.04085 1.02853 1.86475 1.24007 1.32463 1.84202 1.22936 0.90710 0.81890 0.73386 1.90708 1.66444 1.36217 1.43074 1.21303 0.87885 0.86077 0.99721 0.87341 1.22673 0.86042 1.03265 0.96664 1.58670 1.10016 1.17398 1.31936 1.21882 0.98450 0.92960 0.91191 1.74489 1.20580 1.22416 0.97514 1.74089 1.09995 1.04546 1.24967 1.25722 0.99519 1.00373 0.78964 1.20495 0.95270 0.91474 0.99993 1.19062 0.86812 0.97148 0.97552 1.21088 0.93567 0.99311 1.42410 0.92311 1.25010 0.98219 0.95526 0.95476 1.69955 1.13875 1.21558 1.47683 0.86607 0.79551 0.81716 0.79839 1.20184 1.21272 1.20061 1.46196 1.35348 1.25373 1.08697 1.22021 1.00457 0.96568 0.87144 1.22999 1.02475 0.85367 0.98909 1.22328 0.79713 0.97885 0.96345 0.90629 1.21749 1.02232 0.92454 1.03704 1.88077 1.23013 1.22067 1.94323 0.91580 0.91639 0.87634 0.88033 0.91230 0.89137 0.91021 0.96727 0.95632 0.92765 0.89871 0.89136 0.89151 0.91329 0.88626 0.91275 0.90196 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.25 10.56 -39.26 -0.41 -3.66 16 3 C 0.47 5.19 7.29 36.00 0.26 5.45 16 4 O -0.48 -6.72 16.26 -25.45 -0.41 -7.13 16 5 C 0.11 1.10 3.33 -27.84 -0.09 1.01 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.04 0.47 4.84 -3.71 -0.02 0.45 16 8 N -0.45 -5.64 4.72 -174.21 -0.82 -6.46 16 9 C 0.31 5.00 6.46 -318.88 -2.06 2.94 16 10 N -0.31 -5.93 12.18 30.31 0.37 -5.56 16 11 N -0.30 -6.27 12.18 32.99 0.40 -5.86 16 12 C 0.22 4.24 7.32 -154.01 -1.13 3.11 16 13 C -0.03 -0.64 5.53 -27.89 -0.15 -0.79 16 14 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 15 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.46 -7.43 3.21 -121.46 -0.39 -7.81 16 24 C 0.08 0.94 11.01 59.85 0.66 1.60 16 25 C 0.03 0.34 4.84 -3.71 -0.02 0.33 16 26 C 0.09 0.88 3.43 -26.68 -0.09 0.79 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 C -0.14 -1.12 9.57 37.16 0.36 -0.76 16 29 O -0.36 -4.06 9.65 -55.09 -0.53 -4.59 16 30 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 36 H 0.07 1.23 7.38 -51.93 -0.38 0.85 16 37 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 42 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -34.90 395.77 -9.38 -44.28 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.49 Total: -2.92 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.77 Total: 3.29 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.30 Total: -51.05 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.36 Total: -15.38 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.90 -9.38 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121401193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.591 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds