Wall clock time and date at job start Tue Mar 31 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99741 * 2 1 4 4 O 1.20826 * 120.00221 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99609 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.51061 * 55.08185 * 5 3 2 7 7 C 1.53094 * 109.50639 * 294.99005 * 5 3 2 8 8 N 1.47016 * 109.26168 * 183.17501 * 7 5 3 9 9 C 1.38579 * 111.00148 * 182.39693 * 8 7 5 10 10 N 1.31220 * 126.47330 * 296.46351 * 9 8 7 11 11 N 1.28520 * 109.86366 * 180.02562 * 10 9 8 12 12 C 1.30305 * 110.05192 * 359.71985 * 11 10 9 13 13 C 1.50698 * 126.34515 * 180.31358 * 12 11 10 14 14 C 1.52995 * 109.47140 * 270.14864 * 13 12 11 15 15 C 1.50698 * 109.47398 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99552 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00280 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99867 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99938 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47278 * 59.99701 * 19 17 15 21 21 H 1.48504 * 109.46976 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46984 * 299.99544 * 19 17 15 23 23 N 1.36446 * 126.47419 * 116.50802 * 9 8 7 24 24 C 1.46499 * 127.13646 * 359.96274 * 23 9 8 25 25 C 1.47014 * 110.75128 * 58.61931 * 8 7 5 26 26 C 1.53101 * 109.25838 * 301.38723 * 25 8 7 27 27 H 1.09004 * 109.54189 * 296.89002 * 26 25 8 28 28 C 1.53000 * 109.50950 * 176.78438 * 26 25 8 29 29 O 1.43015 * 109.25886 * 56.84344 * 26 25 8 30 30 H 1.08998 * 109.46738 * 300.00173 * 1 2 3 31 31 H 1.08999 * 109.46697 * 60.00246 * 1 2 3 32 32 H 1.08996 * 109.46512 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.50560 * 63.24286 * 7 5 3 34 34 H 1.08999 * 109.51097 * 303.11183 * 7 5 3 35 35 H 1.08994 * 109.47541 * 30.15487 * 13 12 11 36 36 H 1.09001 * 109.46705 * 150.15088 * 13 12 11 37 37 H 1.09008 * 109.47431 * 300.00900 * 14 13 12 38 38 H 1.09001 * 109.47139 * 60.00490 * 14 13 12 39 39 H 0.97003 * 120.00295 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47264 * 95.16658 * 24 23 9 41 41 H 1.08996 * 109.47387 * 335.15845 * 24 23 9 42 42 H 1.09003 * 109.47436 * 215.15476 * 24 23 9 43 43 H 1.08999 * 109.50473 * 61.31792 * 25 8 7 44 44 H 1.08991 * 109.50811 * 181.45339 * 25 8 7 45 45 H 1.08995 * 109.46964 * 300.21540 * 28 26 25 46 46 H 1.09001 * 109.46927 * 60.21579 * 28 26 25 47 47 H 1.08994 * 109.47056 * 180.21563 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9603 0.7068 -0.8432 7 6 4.1092 0.6925 1.3071 8 7 5.5716 0.8413 1.3339 9 6 6.1073 0.2767 2.4805 10 7 5.8853 0.6600 3.7157 11 7 6.5440 -0.0856 4.5294 12 6 7.2152 -0.9852 3.8674 13 6 8.1040 -2.0496 4.4572 14 6 9.5306 -1.5110 4.5824 15 6 10.4196 -2.5756 5.1716 16 1 10.0082 -3.5398 5.4312 17 6 11.7580 -2.3183 5.3803 18 7 12.2589 -1.1440 5.0646 19 14 12.8599 -3.6378 6.1113 20 1 12.8574 -4.8306 5.2269 21 1 14.2443 -3.1146 6.2339 22 1 12.3537 -4.0168 7.4550 23 7 6.9658 -0.7823 2.5384 24 6 7.5035 -1.5475 1.4108 25 6 5.9536 2.2559 1.2153 26 6 5.3922 2.8227 -0.0914 27 1 5.8391 2.3003 -0.9373 28 6 5.7177 4.3149 -0.1827 29 8 3.9738 2.6411 -0.1135 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.8497 -0.3642 1.3703 34 1 3.6736 1.2261 2.1518 35 1 7.7327 -2.3277 5.4435 36 1 8.1020 -2.9253 3.8081 37 1 9.9019 -1.2329 3.5960 38 1 9.5326 -0.6353 5.2315 39 1 13.2006 -0.9631 5.2110 40 1 8.4795 -1.1491 1.1337 41 1 6.8246 -1.4691 0.5617 42 1 7.6066 -2.5940 1.6980 43 1 5.5473 2.8145 2.0585 44 1 7.0402 2.3405 1.2115 45 1 5.2718 4.8365 0.6641 46 1 6.7989 4.4525 -0.1659 47 1 5.3145 4.7186 -1.1114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121401193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:24 Heat of formation + Delta-G solvation = -59.640978 kcal Electronic energy + Delta-G solvation = -29879.811452 eV Core-core repulsion = 25678.034102 eV Total energy + Delta-G solvation = -4201.777350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.10212 -41.96410 -40.62820 -37.77934 -37.17002 -36.36690 -35.55276 -34.28183 -33.61977 -31.21831 -29.95206 -28.58969 -28.38834 -27.34756 -26.90474 -25.28486 -23.81624 -22.70824 -22.12879 -21.72900 -21.30553 -18.97843 -18.72613 -18.50535 -18.00189 -17.73204 -17.53625 -17.34436 -16.96542 -16.52904 -16.36139 -16.10833 -15.76744 -15.21513 -14.96253 -14.86148 -14.38015 -14.33084 -14.20459 -13.95225 -13.66737 -13.59914 -13.26022 -13.19032 -13.04033 -13.01165 -12.82784 -12.73929 -12.54221 -12.46158 -12.13201 -12.01662 -11.90005 -11.79692 -11.69665 -11.51403 -11.31591 -11.10181 -11.00311 -10.55232 -10.17670 -10.05595 -8.19260 -6.31331 0.58728 0.84010 1.12330 1.22583 1.44850 1.47849 1.55147 1.67768 2.37597 2.43846 2.74481 3.15409 3.28604 3.42120 3.54326 3.57156 3.75456 3.82633 3.92216 3.99871 4.05828 4.12136 4.21701 4.26516 4.30748 4.35155 4.43253 4.46597 4.63516 4.65933 4.68995 4.70568 4.76328 4.79268 4.90411 4.95546 5.02289 5.14561 5.20194 5.27411 5.40154 5.46415 5.60038 5.79531 5.82852 6.05260 6.17528 6.53102 6.84648 7.38819 7.61299 8.92601 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002373 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.205316 B =11794.130531 C =12629.110240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.516 6.516 5 C 0.115 3.885 6 H 0.143 0.857 7 C 0.046 3.954 8 N -0.439 5.439 9 C 0.331 3.669 10 N -0.343 5.343 11 N -0.333 5.333 12 C 0.207 3.793 13 C -0.016 4.016 14 C 0.043 3.957 15 C -0.539 4.539 16 H 0.074 0.926 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.260 1.260 21 H -0.289 1.289 22 H -0.269 1.269 23 N -0.459 5.459 24 C 0.072 3.928 25 C 0.029 3.971 26 C 0.101 3.899 27 H 0.102 0.898 28 C -0.143 4.143 29 O -0.375 6.375 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.102 0.898 37 H -0.003 1.003 38 H -0.019 1.019 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.427 0.719 -18.409 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.316 3.684 4 O -0.404 6.404 5 C 0.056 3.944 6 H 0.160 0.840 7 C -0.082 4.082 8 N -0.165 5.165 9 C -0.026 4.026 10 N -0.187 5.187 11 N -0.174 5.174 12 C -0.061 4.061 13 C -0.056 4.056 14 C 0.005 3.995 15 C -0.576 4.576 16 H 0.092 0.908 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.184 1.184 21 H -0.215 1.215 22 H -0.194 1.194 23 N -0.150 5.150 24 C -0.069 4.069 25 C -0.098 4.098 26 C 0.044 3.956 27 H 0.120 0.880 28 C -0.200 4.200 29 O -0.295 6.295 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.015 0.985 38 H -0.001 1.001 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.996 1.782 -17.713 26.034 hybrid contribution 0.944 -0.422 0.458 1.131 sum -18.051 1.359 -17.255 25.009 Atomic orbital electron populations 1.23653 0.73859 1.06172 1.02791 1.86473 1.25535 1.31316 1.83548 1.23153 0.91084 0.81862 0.72313 1.90694 1.67253 1.37462 1.44971 1.21399 0.87337 0.85875 0.99820 0.83979 1.22667 0.84947 1.03834 0.96774 1.58942 1.10579 1.17685 1.29299 1.22239 0.97037 0.92022 0.91348 1.74411 1.21940 1.23412 0.98959 1.73979 1.11169 1.05530 1.26700 1.25472 0.99947 1.00304 0.80400 1.20201 0.92041 0.92349 1.00977 1.18828 0.90026 0.95369 0.95303 1.21567 0.94060 1.00163 1.41851 0.90821 1.25980 1.00074 0.97736 0.95919 1.70108 1.14226 1.23877 1.49258 0.85474 0.77051 0.79073 0.79300 1.18410 1.21476 1.19373 1.46376 1.34708 1.25305 1.08610 1.22414 1.01087 0.96760 0.86651 1.23077 1.02583 0.84515 0.99648 1.22457 0.78809 0.98875 0.95493 0.88048 1.21786 1.03239 0.91357 1.03620 1.88077 1.24130 1.22990 1.94271 0.92181 0.91267 0.84474 0.86765 0.93752 0.89248 0.87933 0.98456 1.00070 0.92828 0.89988 0.85893 0.87647 0.93729 0.88546 0.92650 0.88622 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.82 10.56 -51.42 -0.54 -6.37 16 3 C 0.47 9.91 7.29 71.24 0.52 10.43 16 4 O -0.52 -14.34 16.26 28.37 0.46 -13.88 16 5 C 0.11 2.08 3.33 29.88 0.10 2.18 16 6 H 0.14 1.64 8.14 -2.39 -0.02 1.63 16 7 C 0.05 0.98 4.84 86.31 0.42 1.39 16 8 N -0.44 -10.28 4.72 -705.08 -3.33 -13.61 16 9 C 0.33 10.47 6.46 260.11 1.68 12.15 16 10 N -0.34 -13.66 12.18 -58.01 -0.71 -14.36 16 11 N -0.33 -14.55 12.18 -49.53 -0.60 -15.15 16 12 C 0.21 7.98 7.32 137.64 1.01 8.99 16 13 C -0.02 -0.62 5.53 29.85 0.16 -0.46 16 14 C 0.04 2.18 4.95 29.85 0.15 2.32 16 15 C -0.54 -28.70 9.11 25.60 0.23 -28.47 16 16 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 17 C 0.00 0.05 5.46 84.66 0.46 0.51 16 18 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 19 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 N -0.46 -14.18 3.21 -538.19 -1.73 -15.91 16 24 C 0.07 1.48 11.01 127.77 1.41 2.89 16 25 C 0.03 0.65 4.84 86.32 0.42 1.07 16 26 C 0.10 1.69 3.43 30.63 0.10 1.80 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.14 -2.02 9.57 71.98 0.69 -1.33 16 29 O -0.38 -8.04 9.65 -129.99 -1.25 -9.29 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.10 3.31 7.38 -2.39 -0.02 3.29 16 37 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 38 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 1.73 8.11 -2.39 -0.02 1.71 16 42 H 0.11 1.88 7.40 -2.39 -0.02 1.86 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.44 395.77 4.12 -74.32 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.96 Total: 10.32 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 8.55 Total: 14.98 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -6.08 Total: -114.45 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.34 Total: -29.54 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -78.44 4.12 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121401193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.678 kcal (2) G-P(sol) polarization free energy of solvation -78.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds