Wall clock time and date at job start Tue Mar 31 2020 21:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46254 * 2 1 4 4 C 1.53040 * 109.45669 * 119.97165 * 2 1 3 5 5 C 1.53195 * 109.31233 * 181.36998 * 4 2 1 6 6 N 1.46920 * 108.77715 * 305.37008 * 5 4 2 7 7 C 1.34780 * 120.63110 * 233.58100 * 6 5 4 8 8 O 1.21280 * 120.00423 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 0.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.47310 * 126.68882 * 89.99924 * 10 9 7 12 12 C 1.51584 * 103.59590 * 179.97438 * 11 10 9 13 13 O 1.21234 * 127.15847 * 179.97438 * 12 11 10 14 14 N 1.34765 * 105.68352 * 0.02562 * 12 11 10 15 15 C 1.33797 * 111.64264 * 359.76561 * 14 12 11 16 16 O 1.21538 * 123.76911 * 180.25073 * 15 14 12 17 17 C 1.46928 * 118.74133 * 53.85726 * 6 5 4 18 18 C 1.53040 * 109.45010 * 240.03500 * 2 1 3 19 19 H 1.08996 * 109.50064 * 298.57268 * 18 2 1 20 20 C 1.53001 * 109.49889 * 58.67550 * 18 2 1 21 21 N 1.46494 * 109.46918 * 185.00140 * 20 18 2 22 22 C 1.36944 * 120.00084 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99349 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00190 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99740 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00286 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46753 * 89.99923 * 26 24 22 28 28 H 1.48490 * 109.47186 * 210.00487 * 26 24 22 29 29 H 1.48503 * 109.46851 * 330.00590 * 26 24 22 30 30 H 1.08998 * 109.47537 * 300.03073 * 1 2 3 31 31 H 1.09004 * 109.46795 * 60.02857 * 1 2 3 32 32 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49589 * 61.42562 * 4 2 1 34 34 H 1.08994 * 109.52726 * 301.33737 * 4 2 1 35 35 H 1.09002 * 109.59128 * 185.58008 * 5 4 2 36 36 H 1.09004 * 109.58369 * 65.15588 * 5 4 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.09003 * 110.60310 * 298.49354 * 11 10 9 40 40 H 1.09007 * 110.59961 * 61.28077 * 11 10 9 41 41 H 0.97003 * 124.18110 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.58457 * 65.92718 * 17 6 5 43 43 H 1.09001 * 109.58558 * 186.35342 * 17 6 5 44 44 H 1.09004 * 109.46698 * 304.99644 * 20 18 2 45 45 H 1.08994 * 109.47335 * 64.99334 * 20 18 2 46 46 H 0.97001 * 120.00546 * 359.97438 * 21 20 18 47 47 H 0.96995 * 120.00173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5713 -0.6891 1.2641 6 7 4.0676 -1.2493 -0.0002 7 6 4.9616 -2.2579 -0.0004 8 8 5.3633 -2.7120 -1.0507 9 6 5.4613 -2.8220 1.3047 10 7 6.4164 -3.9001 1.0368 11 6 7.8744 -3.7645 0.8759 12 6 8.3384 -5.1850 0.6216 13 8 9.4748 -5.5607 0.4289 14 7 7.2247 -5.9432 0.6531 15 6 6.1335 -5.2075 0.8945 16 8 5.0118 -5.6686 0.9738 17 6 3.5753 -0.6851 -1.2644 18 6 2.0396 -0.7208 -1.2502 19 1 1.6974 -1.7556 -1.2385 20 6 1.5026 -0.0186 -2.4990 21 7 1.8913 -0.7769 -3.6906 22 6 1.5198 -0.3374 -4.9333 23 1 0.9399 0.5681 -5.0347 24 6 1.8885 -1.0556 -6.0625 25 7 1.5319 -0.6328 -7.2568 26 14 2.8921 -2.6214 -5.8871 27 1 1.9771 -3.7830 -5.7512 28 1 3.7443 -2.8004 -7.0899 29 1 3.7525 -2.5252 -4.6806 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6975 -1.7557 1.2382 34 1 1.6573 -0.2213 2.1401 35 1 3.9416 -1.2851 2.0982 36 1 3.9144 0.3404 1.3672 37 1 5.9526 -2.0347 1.8765 38 1 4.6207 -3.2154 1.8761 39 1 8.1085 -3.1264 0.0237 40 1 8.3254 -3.3681 1.7856 41 1 7.2157 -6.9042 0.5211 42 1 3.9188 0.3446 -1.3633 43 1 3.9483 -1.2787 -2.0991 44 1 0.4155 0.0395 -2.4440 45 1 1.9178 0.9874 -2.5570 46 1 2.4118 -1.5904 -3.5996 47 1 1.7898 -1.1344 -8.0459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133185613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:05 Heat of formation + Delta-G solvation = -57.157965 kcal Electronic energy + Delta-G solvation = -30355.787140 eV Core-core repulsion = 26154.117461 eV Total energy + Delta-G solvation = -4201.669679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59347 -40.41702 -38.98589 -38.14875 -36.47990 -35.23573 -34.82804 -33.86171 -31.99357 -30.53548 -29.86720 -28.34913 -27.30172 -25.68677 -23.63691 -23.01652 -22.69704 -21.89792 -21.16873 -20.12669 -19.26517 -18.54747 -17.95408 -17.47603 -17.06585 -16.81538 -16.27168 -16.11005 -15.47369 -15.10139 -14.91728 -14.59462 -14.49488 -14.45373 -14.18859 -14.07679 -13.75089 -13.52436 -13.47111 -13.12555 -12.90125 -12.56403 -12.44631 -12.01375 -11.87064 -11.73207 -11.39826 -11.29771 -11.04064 -10.90418 -10.71943 -10.68924 -10.67190 -10.44487 -10.32688 -10.15284 -10.00812 -9.53984 -9.28911 -8.87750 -8.70236 -7.19089 -5.73615 -3.09005 1.23330 1.71163 2.39346 2.56384 2.63204 2.94998 3.45017 3.51423 3.54047 3.64501 4.13873 4.23963 4.46700 4.55390 4.64813 4.68633 4.70250 4.73840 4.77376 4.97654 5.09837 5.14216 5.21792 5.45071 5.51248 5.55556 5.58337 5.64464 5.66373 5.72827 5.80647 5.81756 5.82560 5.97810 6.08031 6.22235 6.30844 6.33286 6.42023 6.60337 6.69961 6.75699 6.96293 7.23285 7.72521 7.99474 8.02004 8.45483 9.24648 9.97666 10.16631 11.44651 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.003653 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.354446 B = 7662.357394 C = 9786.805638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.131 4.131 5 C 0.105 3.895 6 N -0.609 5.609 7 C 0.489 3.511 8 O -0.524 6.524 9 C 0.136 3.864 10 N -0.610 5.610 11 C 0.064 3.936 12 C 0.530 3.470 13 O -0.472 6.472 14 N -0.678 5.678 15 C 0.708 3.292 16 O -0.537 6.537 17 C 0.118 3.882 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.879 3.121 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.433 0.567 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.027 0.973 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -1.370 27.645 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.169 4.169 5 C -0.018 4.018 6 N -0.343 5.343 7 C 0.274 3.726 8 O -0.399 6.399 9 C 0.010 3.990 10 N -0.348 5.348 11 C -0.062 4.062 12 C 0.317 3.683 13 O -0.342 6.342 14 N -0.348 5.348 15 C 0.408 3.592 16 O -0.409 6.409 17 C -0.003 4.003 18 C -0.126 4.126 19 H 0.093 0.907 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.709 3.291 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.276 0.724 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.578 -1.724 26.869 28.577 hybrid contribution 0.618 -1.516 -0.205 1.650 sum 10.196 -3.240 26.664 28.730 Atomic orbital electron populations 1.21892 0.94738 1.02080 1.01951 1.21070 0.96183 0.99376 0.93586 0.90828 1.22002 0.94316 1.01898 0.98677 1.21811 0.95257 0.99435 0.85288 1.48208 1.42924 1.35070 1.08095 1.21070 0.79788 0.79902 0.91793 1.90779 1.57269 1.58777 1.33061 1.21219 0.93282 0.89002 0.95479 1.46947 1.07211 1.05886 1.74778 1.22557 0.80888 0.96457 1.06333 1.20759 0.84374 0.88743 0.74472 1.90867 1.18802 1.78906 1.45616 1.44301 1.08948 1.13420 1.68140 1.15745 0.84077 0.81841 0.77490 1.91046 1.20266 1.74420 1.55186 1.21859 0.93863 0.99134 0.85464 1.21862 0.94296 1.00898 0.95570 0.90745 1.20707 0.97438 0.94045 0.84293 1.42782 1.66103 1.28800 1.02608 1.19035 1.28515 1.07997 0.81885 0.89208 1.24635 1.00515 0.98588 0.95116 1.69698 1.50898 1.40613 0.97027 0.86633 0.80642 0.84674 0.77178 1.21118 1.21701 1.19925 0.93057 0.91457 0.92733 0.91281 0.90535 0.90168 0.90793 0.86313 0.86113 0.85516 0.85633 0.72437 0.91046 0.88466 0.94626 0.95537 0.80560 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.82 37.16 0.33 -1.23 16 2 C -0.08 -0.87 2.22 -90.58 -0.20 -1.07 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 5 C 0.11 0.71 6.34 -3.71 -0.02 0.68 16 6 N -0.61 -6.83 2.97 -172.50 -0.51 -7.34 16 7 C 0.49 6.05 7.77 -10.98 -0.09 5.97 16 8 O -0.52 -9.25 15.84 5.56 0.09 -9.17 16 9 C 0.14 1.00 4.97 -5.19 -0.03 0.97 16 10 N -0.61 -5.41 2.51 -181.39 -0.45 -5.86 16 11 C 0.06 0.40 7.66 -4.32 -0.03 0.37 16 12 C 0.53 4.65 8.81 -10.56 -0.09 4.56 16 13 O -0.47 -5.42 18.02 5.60 0.10 -5.32 16 14 N -0.68 -6.12 5.70 -15.79 -0.09 -6.21 16 15 C 0.71 8.09 8.68 -88.02 -0.76 7.32 16 16 O -0.54 -8.15 17.71 5.33 0.09 -8.06 16 17 C 0.12 1.74 5.55 -3.48 -0.02 1.72 16 18 C -0.11 -1.56 1.93 -90.27 -0.17 -1.73 16 19 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.03 5.41 -4.04 -0.02 3.01 16 21 N -0.76 -18.32 5.18 -59.91 -0.31 -18.63 16 22 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 23 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 24 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -30.02 13.97 55.49 0.78 -29.24 16 26 Si 0.88 23.48 27.74 -169.99 -4.71 18.77 16 27 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 29 H -0.27 -7.13 6.52 56.52 0.37 -6.77 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.30 5.93 -51.93 -0.31 -0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.34 7.94 -51.93 -0.41 -0.07 16 38 H 0.12 0.79 7.58 -51.93 -0.39 0.40 16 39 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.43 3.16 8.96 -40.82 -0.37 2.79 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.10 1.85 6.23 -51.93 -0.32 1.53 16 44 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.36 8.87 4.78 -40.82 -0.20 8.67 16 47 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -40.21 379.65 -7.70 -47.90 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.89 Total: 5.09 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -1.51 Total: 12.35 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.59 Total: -67.29 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.28 Total: -22.54 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.71 Total: 18.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.21 -7.70 -47.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133185613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.253 kcal (2) G-P(sol) polarization free energy of solvation -40.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds