Wall clock time and date at job start Tue Mar 31 2020 21:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46254 * 2 1 4 4 C 1.53040 * 109.45669 * 119.97165 * 2 1 3 5 5 C 1.53195 * 109.31233 * 181.36998 * 4 2 1 6 6 N 1.46920 * 108.77715 * 305.37008 * 5 4 2 7 7 C 1.34780 * 120.63110 * 233.58100 * 6 5 4 8 8 O 1.21280 * 120.00423 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 0.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.47310 * 126.68882 * 89.99924 * 10 9 7 12 12 C 1.51584 * 103.59590 * 179.97438 * 11 10 9 13 13 O 1.21234 * 127.15847 * 179.97438 * 12 11 10 14 14 N 1.34765 * 105.68352 * 0.02562 * 12 11 10 15 15 C 1.33797 * 111.64264 * 359.76561 * 14 12 11 16 16 O 1.21538 * 123.76911 * 180.25073 * 15 14 12 17 17 C 1.46928 * 118.74133 * 53.85726 * 6 5 4 18 18 C 1.53040 * 109.45010 * 240.03500 * 2 1 3 19 19 H 1.08996 * 109.50064 * 298.57268 * 18 2 1 20 20 C 1.53001 * 109.49889 * 58.67550 * 18 2 1 21 21 N 1.46494 * 109.46918 * 185.00140 * 20 18 2 22 22 C 1.36944 * 120.00084 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99349 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00190 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99740 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00286 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46753 * 89.99923 * 26 24 22 28 28 H 1.48490 * 109.47186 * 210.00487 * 26 24 22 29 29 H 1.48503 * 109.46851 * 330.00590 * 26 24 22 30 30 H 1.08998 * 109.47537 * 300.03073 * 1 2 3 31 31 H 1.09004 * 109.46795 * 60.02857 * 1 2 3 32 32 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49589 * 61.42562 * 4 2 1 34 34 H 1.08994 * 109.52726 * 301.33737 * 4 2 1 35 35 H 1.09002 * 109.59128 * 185.58008 * 5 4 2 36 36 H 1.09004 * 109.58369 * 65.15588 * 5 4 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.09003 * 110.60310 * 298.49354 * 11 10 9 40 40 H 1.09007 * 110.59961 * 61.28077 * 11 10 9 41 41 H 0.97003 * 124.18110 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.58457 * 65.92718 * 17 6 5 43 43 H 1.09001 * 109.58558 * 186.35342 * 17 6 5 44 44 H 1.09004 * 109.46698 * 304.99644 * 20 18 2 45 45 H 1.08994 * 109.47335 * 64.99334 * 20 18 2 46 46 H 0.97001 * 120.00546 * 359.97438 * 21 20 18 47 47 H 0.96995 * 120.00173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5713 -0.6891 1.2641 6 7 4.0676 -1.2493 -0.0002 7 6 4.9616 -2.2579 -0.0004 8 8 5.3633 -2.7120 -1.0507 9 6 5.4613 -2.8220 1.3047 10 7 6.4164 -3.9001 1.0368 11 6 7.8744 -3.7645 0.8759 12 6 8.3384 -5.1850 0.6216 13 8 9.4748 -5.5607 0.4289 14 7 7.2247 -5.9432 0.6531 15 6 6.1335 -5.2075 0.8945 16 8 5.0118 -5.6686 0.9738 17 6 3.5753 -0.6851 -1.2644 18 6 2.0396 -0.7208 -1.2502 19 1 1.6974 -1.7556 -1.2385 20 6 1.5026 -0.0186 -2.4990 21 7 1.8913 -0.7769 -3.6906 22 6 1.5198 -0.3374 -4.9333 23 1 0.9399 0.5681 -5.0347 24 6 1.8885 -1.0556 -6.0625 25 7 1.5319 -0.6328 -7.2568 26 14 2.8921 -2.6214 -5.8871 27 1 1.9771 -3.7830 -5.7512 28 1 3.7443 -2.8004 -7.0899 29 1 3.7525 -2.5252 -4.6806 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6975 -1.7557 1.2382 34 1 1.6573 -0.2213 2.1401 35 1 3.9416 -1.2851 2.0982 36 1 3.9144 0.3404 1.3672 37 1 5.9526 -2.0347 1.8765 38 1 4.6207 -3.2154 1.8761 39 1 8.1085 -3.1264 0.0237 40 1 8.3254 -3.3681 1.7856 41 1 7.2157 -6.9042 0.5211 42 1 3.9188 0.3446 -1.3633 43 1 3.9483 -1.2787 -2.0991 44 1 0.4155 0.0395 -2.4440 45 1 1.9178 0.9874 -2.5570 46 1 2.4118 -1.5904 -3.5996 47 1 1.7898 -1.1344 -8.0459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133185613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:04 Heat of formation + Delta-G solvation = -89.721502 kcal Electronic energy + Delta-G solvation = -30357.199200 eV Core-core repulsion = 26154.117461 eV Total energy + Delta-G solvation = -4203.081740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32306 -41.32926 -39.81319 -39.18310 -37.33864 -36.77374 -35.57165 -35.09452 -33.69919 -31.98594 -30.64723 -29.18539 -28.22568 -27.03116 -24.71866 -24.37680 -23.40267 -22.70477 -22.54216 -21.22554 -20.09441 -19.65318 -19.28670 -18.61643 -17.83097 -17.63121 -17.10899 -16.92878 -16.76164 -16.35226 -16.05801 -15.78373 -15.50201 -15.32750 -15.22544 -15.12113 -14.88103 -14.66205 -14.31833 -14.29620 -14.14404 -13.91294 -13.40327 -13.20388 -13.16361 -12.85052 -12.64302 -12.60130 -12.28521 -12.22370 -12.00244 -11.92054 -11.77844 -11.54545 -11.49552 -11.38756 -11.24161 -11.12301 -10.99879 -10.05284 -9.64872 -9.32445 -8.10234 -5.41066 0.51075 1.05062 1.27769 1.30886 1.36988 1.53364 1.80705 1.93726 2.17470 2.38478 3.01048 3.22184 3.42998 3.53256 3.71158 3.80791 3.83575 4.01463 4.09568 4.19456 4.29051 4.29625 4.32472 4.39442 4.57588 4.61979 4.64656 4.75869 4.79755 4.85346 4.95304 4.97397 5.00093 5.08287 5.13314 5.15750 5.23903 5.29250 5.46569 5.54988 5.60412 5.70990 5.87231 6.15475 6.26674 6.41384 6.93965 7.01399 7.12667 7.79575 7.95474 9.11571 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.003653 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.354446 B = 7662.357394 C = 9786.805638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.098 3.902 6 N -0.605 5.605 7 C 0.479 3.521 8 O -0.590 6.590 9 C 0.139 3.861 10 N -0.605 5.605 11 C 0.070 3.930 12 C 0.531 3.469 13 O -0.503 6.503 14 N -0.676 5.676 15 C 0.701 3.299 16 O -0.583 6.583 17 C 0.123 3.877 18 C -0.094 4.094 19 H 0.051 0.949 20 C 0.157 3.843 21 N -0.763 5.763 22 C -0.228 4.228 23 H 0.066 0.934 24 C -0.053 4.053 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.270 1.270 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.180 0.820 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.178 0.822 41 H 0.437 0.563 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.031 0.969 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -0.307 32.232 33.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.023 4.023 6 N -0.337 5.337 7 C 0.267 3.733 8 O -0.470 6.470 9 C 0.015 3.985 10 N -0.343 5.343 11 C -0.054 4.054 12 C 0.319 3.681 13 O -0.375 6.375 14 N -0.345 5.345 15 C 0.402 3.598 16 O -0.459 6.459 17 C 0.000 4.000 18 C -0.114 4.114 19 H 0.070 0.930 20 C 0.031 3.969 21 N -0.408 5.408 22 C -0.359 4.359 23 H 0.084 0.916 24 C -0.245 4.245 25 N -0.629 5.629 26 Si 0.770 3.230 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.196 1.196 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.198 0.802 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.195 0.805 41 H 0.280 0.720 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.192 0.808 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.688 -0.616 31.549 33.315 hybrid contribution 0.192 -1.740 -1.605 2.375 sum 10.880 -2.356 29.943 31.946 Atomic orbital electron populations 1.21881 0.94851 1.01547 1.02301 1.21087 0.96046 0.99896 0.92666 0.89397 1.22008 0.95133 1.01116 0.98166 1.22265 0.94458 1.01546 0.83993 1.48303 1.42362 1.34720 1.08358 1.22103 0.79098 0.79249 0.92896 1.90755 1.59640 1.60796 1.35810 1.21591 0.94289 0.89851 0.92762 1.47148 1.08553 1.05138 1.73418 1.22803 0.79393 0.94457 1.08783 1.21164 0.83665 0.89799 0.73436 1.90857 1.19830 1.79672 1.47131 1.44315 1.08796 1.13851 1.67550 1.16006 0.83702 0.82914 0.77225 1.91007 1.22005 1.75484 1.57440 1.21505 0.93600 0.98699 0.86239 1.21722 0.94379 0.99591 0.95710 0.93021 1.20949 0.97592 0.94070 0.84240 1.42899 1.65893 1.29199 1.02800 1.19095 1.26492 1.06555 0.83761 0.91580 1.25275 1.02493 1.01760 0.94971 1.69832 1.53063 1.42280 0.97770 0.85633 0.79218 0.81224 0.76963 1.20839 1.21722 1.19553 0.90190 0.93597 0.93731 0.92522 0.86883 0.85906 0.88278 0.80250 0.84603 0.85321 0.80525 0.72047 0.90259 0.93493 0.94579 0.95096 0.80793 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.82 71.98 0.63 -2.16 16 2 C -0.08 -1.41 2.22 -10.77 -0.02 -1.43 16 3 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.13 -1.36 5.36 30.67 0.16 -1.19 16 5 C 0.10 0.78 6.34 86.36 0.55 1.33 16 6 N -0.60 -11.97 2.97 -818.04 -2.43 -14.40 16 7 C 0.48 10.84 7.77 87.66 0.68 11.52 16 8 O -0.59 -20.98 15.84 -3.03 -0.05 -21.02 16 9 C 0.14 1.44 4.97 85.63 0.43 1.86 16 10 N -0.61 -8.96 2.51 -846.22 -2.12 -11.08 16 11 C 0.07 0.65 7.66 85.76 0.66 1.31 16 12 C 0.53 8.57 8.81 87.94 0.77 9.34 16 13 O -0.50 -11.13 18.02 -2.89 -0.05 -11.18 16 14 N -0.68 -11.81 5.70 -441.12 -2.52 -14.32 16 15 C 0.70 15.27 8.68 179.44 1.56 16.82 16 16 O -0.58 -17.61 17.71 -3.83 -0.07 -17.68 16 17 C 0.12 3.56 5.55 86.51 0.48 4.04 16 18 C -0.09 -2.70 1.93 -10.57 -0.02 -2.72 16 19 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 20 C 0.16 5.95 5.41 86.38 0.47 6.41 16 21 N -0.76 -37.85 5.18 -343.45 -1.78 -39.63 16 22 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 23 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 24 C -0.05 -3.29 5.50 84.86 0.47 -2.82 16 25 N -0.98 -64.77 13.97 21.65 0.30 -64.47 16 26 Si 0.94 50.30 27.74 68.60 1.90 52.21 16 27 H -0.28 -14.83 7.11 99.48 0.71 -14.13 16 28 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 29 H -0.27 -14.13 6.52 99.48 0.65 -13.48 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 1.05 6.29 -2.38 -0.02 1.03 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 0.01 5.93 -2.39 -0.01 -0.01 16 36 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.18 -0.31 7.94 -2.39 -0.02 -0.33 16 38 H 0.14 1.11 7.58 -2.39 -0.02 1.09 16 39 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.18 -0.08 8.14 -2.38 -0.02 -0.10 16 41 H 0.44 6.46 8.96 -92.71 -0.83 5.63 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.05 1.85 6.23 -2.39 -0.01 1.83 16 44 H 0.04 1.38 6.14 -2.38 -0.01 1.37 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.36 18.14 4.78 -92.71 -0.44 17.69 16 47 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -95.72 379.65 0.57 -95.15 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.32 Total: 16.79 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 7.69 Total: 29.65 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -8.54 Total: -143.91 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.17 Total: -49.88 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.90 Total: 52.21 kcal Total: -95.72 0.57 -95.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133185613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.425 kcal (2) G-P(sol) polarization free energy of solvation -95.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds