Wall clock time and date at job start Tue Mar 31 2020 21:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.44602 * 2 1 4 4 C 1.53039 * 109.45931 * 240.03465 * 2 1 3 5 5 C 1.52760 * 109.38459 * 301.22146 * 4 2 1 6 6 N 1.46931 * 109.00543 * 305.58756 * 5 4 2 7 7 C 1.34777 * 120.63086 * 233.58109 * 6 5 4 8 8 O 1.21283 * 119.99750 * 179.72075 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.02562 * 7 6 5 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 11 11 C 1.34775 * 124.17858 * 269.72119 * 10 9 7 12 12 O 1.21236 * 127.15384 * 0.02562 * 11 10 9 13 13 C 1.51582 * 105.68734 * 179.97438 * 11 10 9 14 14 N 1.47312 * 103.59110 * 0.32066 * 13 11 10 15 15 C 1.33794 * 124.18140 * 90.02435 * 10 9 7 16 16 O 1.21541 * 123.77158 * 359.95913 * 15 10 9 17 17 C 1.46925 * 118.73924 * 53.31068 * 6 5 4 18 18 C 1.53042 * 109.45921 * 119.96469 * 2 1 3 19 19 H 1.08998 * 109.49757 * 178.60640 * 18 2 1 20 20 C 1.52997 * 109.52566 * 298.69062 * 18 2 1 21 21 N 1.46495 * 109.47191 * 184.85467 * 20 18 2 22 22 C 1.36936 * 120.00099 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00023 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00216 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99820 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00267 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47198 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47819 * 120.00099 * 26 24 22 29 29 H 1.48501 * 109.47147 * 240.00232 * 26 24 22 30 30 H 1.08997 * 109.46918 * 300.03622 * 1 2 3 31 31 H 1.09009 * 109.46893 * 60.03120 * 1 2 3 32 32 H 1.08996 * 109.46744 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49958 * 61.29724 * 4 2 1 34 34 H 1.09000 * 109.49401 * 181.36254 * 4 2 1 35 35 H 1.08997 * 109.51122 * 185.71191 * 5 4 2 36 36 H 1.09000 * 109.43557 * 65.42042 * 5 4 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.08998 * 110.76404 * 241.71443 * 13 11 10 40 40 H 1.08993 * 110.43515 * 118.76698 * 13 11 10 41 41 H 0.97003 * 126.69138 * 179.76965 * 14 13 11 42 42 H 1.09005 * 109.58470 * 66.42378 * 17 6 5 43 43 H 1.08995 * 109.58817 * 186.71135 * 17 6 5 44 44 H 1.08999 * 109.46996 * 304.85356 * 20 18 2 45 45 H 1.09006 * 109.47330 * 64.84881 * 20 18 2 46 46 H 0.96997 * 119.99845 * 359.97438 * 21 20 18 47 47 H 0.96997 * 120.00098 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.5045 -2.1514 -1.2643 6 7 1.8626 -2.8088 0.0000 7 6 2.5164 -3.9874 0.0000 8 8 2.8108 -4.5175 1.0503 9 6 2.8878 -4.6431 -1.3051 10 7 3.5911 -5.8999 -1.0374 11 6 4.9278 -6.0054 -0.9014 12 8 5.7440 -5.1118 -0.9743 13 6 5.1983 -7.4732 -0.6370 14 7 3.8575 -8.0828 -0.6645 15 6 2.9864 -7.0858 -0.9035 16 8 1.7846 -7.2450 -0.9896 17 6 1.4996 -2.1542 1.2642 18 6 2.0399 -0.7207 1.2501 19 1 3.1296 -0.7428 1.2384 20 6 1.5575 0.0191 2.4994 21 7 2.1406 -0.6027 3.6908 22 6 1.8500 -0.1068 4.9337 23 1 1.1907 0.7426 5.0357 24 6 2.4020 -0.6963 6.0627 25 7 3.2043 -1.7324 5.9386 26 14 2.0052 -0.0203 7.7582 27 1 1.0858 1.1385 7.6264 28 1 1.3555 -1.0779 8.5734 29 1 3.2592 0.4166 8.4229 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6958 -0.1934 -2.1399 34 1 3.1296 -0.7423 -1.2385 35 1 1.9465 -2.6972 -2.0979 36 1 0.4200 -2.1317 -1.3716 37 1 1.9839 -4.8476 -1.8791 38 1 3.5367 -3.9776 -1.8743 39 1 5.6622 -7.6109 0.3397 40 1 5.8262 -7.8921 -1.4233 41 1 3.6442 -9.0202 -0.5353 42 1 0.4146 -2.1347 1.3673 43 1 1.9361 -2.7032 2.0985 44 1 1.8673 1.0628 2.4458 45 1 0.4703 -0.0347 2.5565 46 1 2.7324 -1.3657 3.5993 47 1 3.5898 -2.1446 6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133305592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:18 Heat of formation + Delta-G solvation = -56.425396 kcal Electronic energy + Delta-G solvation = -30627.208262 eV Core-core repulsion = 26425.570350 eV Total energy + Delta-G solvation = -4201.637912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58440 -40.30595 -38.77336 -38.11560 -36.30465 -34.99773 -34.82930 -33.54139 -31.88570 -30.05411 -29.14610 -27.89741 -27.42366 -25.35209 -24.65514 -23.18124 -23.11817 -21.47414 -21.16592 -19.66903 -18.35268 -18.27608 -17.73488 -17.03000 -16.97244 -16.63552 -16.16052 -15.53509 -15.30324 -15.24901 -15.00190 -14.89370 -14.39256 -14.32158 -14.24406 -13.80801 -13.60179 -13.52264 -13.29282 -12.99268 -12.72760 -12.47261 -12.32941 -11.95980 -11.64993 -11.29411 -11.19771 -11.06509 -10.88923 -10.78640 -10.62997 -10.60020 -10.51484 -10.25554 -10.16834 -9.90905 -9.81789 -9.59576 -9.45146 -8.81922 -8.48006 -6.84987 -5.68433 -2.98137 1.41785 1.80852 2.59890 2.68635 2.87416 3.12267 3.47922 3.52730 3.55601 3.72315 4.31941 4.43492 4.60196 4.66102 4.67813 4.79828 4.84803 4.85620 4.91423 5.09407 5.18958 5.26064 5.29762 5.34539 5.56145 5.63099 5.67598 5.69571 5.82153 5.89560 5.96560 6.03250 6.17133 6.33612 6.36436 6.38312 6.45988 6.58151 6.63963 6.74589 6.80034 6.92166 7.10946 7.42123 7.76193 7.85436 8.17799 8.49207 9.60194 10.18555 10.52500 11.53979 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.003349 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.936539 B = 8357.825033 C =10078.681518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.103 3.897 6 N -0.605 5.605 7 C 0.498 3.502 8 O -0.519 6.519 9 C 0.102 3.898 10 N -0.562 5.562 11 C 0.525 3.475 12 O -0.463 6.463 13 C 0.066 3.934 14 N -0.727 5.727 15 C 0.708 3.292 16 O -0.541 6.541 17 C 0.121 3.879 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.442 0.558 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -8.756 -23.458 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.340 5.340 7 C 0.283 3.717 8 O -0.394 6.394 9 C -0.023 4.023 10 N -0.308 5.308 11 C 0.312 3.688 12 O -0.332 6.332 13 C -0.062 4.062 14 N -0.392 5.392 15 C 0.409 3.591 16 O -0.414 6.414 17 C 0.000 4.000 18 C -0.122 4.122 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.286 0.714 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.574 -8.444 -22.857 24.374 hybrid contribution -0.031 -0.200 1.071 1.090 sum 0.543 -8.645 -21.786 23.444 Atomic orbital electron populations 1.21993 0.95181 1.02011 1.01843 1.21072 0.96036 0.99436 0.93829 0.90737 1.21880 1.01332 0.94923 0.98677 1.21736 1.00848 0.93974 0.85412 1.48102 1.57236 1.20528 1.08099 1.20618 0.78411 0.81520 0.91114 1.90794 1.52915 1.62948 1.32777 1.21513 0.99943 0.83969 0.96886 1.45831 1.09374 1.08870 1.66735 1.20905 0.81702 0.91480 0.74671 1.90846 1.50137 1.45757 1.46486 1.22457 0.86986 0.90157 1.06568 1.45333 1.06379 1.10466 1.77066 1.15745 0.85375 0.80622 0.77363 1.91021 1.11449 1.83465 1.55474 1.21769 0.99999 0.92912 0.85359 1.21692 1.00923 0.94326 0.95246 0.90798 1.20675 0.95979 0.94711 0.85348 1.42434 1.57035 1.37509 1.00837 1.19246 1.23295 1.10868 0.83775 0.91187 1.24756 1.00078 0.98293 0.97813 1.69692 1.35660 1.24066 1.28370 0.86140 0.77376 0.77947 0.84861 1.20590 1.21901 1.21923 0.91759 0.93099 0.92424 0.90628 0.91366 0.90444 0.90626 0.85739 0.85845 0.85528 0.85813 0.71368 0.91204 0.87966 0.96146 0.95930 0.78138 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 2 C -0.08 -1.02 2.71 -90.57 -0.25 -1.27 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.23 5.61 -26.83 -0.15 -1.38 16 5 C 0.10 0.97 5.85 -3.93 -0.02 0.95 16 6 N -0.61 -8.52 2.98 -173.03 -0.52 -9.03 16 7 C 0.50 7.84 7.77 -10.98 -0.09 7.76 16 8 O -0.52 -10.83 15.84 5.55 0.09 -10.74 16 9 C 0.10 1.14 4.53 -5.20 -0.02 1.12 16 10 N -0.56 -6.70 2.09 -122.03 -0.26 -6.96 16 11 C 0.53 5.84 8.32 -10.55 -0.09 5.75 16 12 O -0.46 -6.50 17.75 5.60 0.10 -6.41 16 13 C 0.07 0.41 7.97 -4.32 -0.03 0.38 16 14 N -0.73 -5.56 6.58 -65.74 -0.43 -6.00 16 15 C 0.71 8.63 8.62 -88.02 -0.76 7.87 16 16 O -0.54 -8.43 17.48 5.33 0.09 -8.33 16 17 C 0.12 2.08 5.05 -3.71 -0.02 2.06 16 18 C -0.10 -1.68 2.15 -90.50 -0.19 -1.88 16 19 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.16 3.26 5.19 -4.05 -0.02 3.24 16 21 N -0.73 -19.25 5.38 -59.91 -0.32 -19.57 16 22 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -29.43 13.06 55.49 0.72 -28.71 16 26 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.64 4.99 -51.93 -0.26 0.39 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 36 H 0.08 0.64 6.70 -51.93 -0.35 0.29 16 37 H 0.12 1.12 7.67 -51.93 -0.40 0.72 16 38 H 0.12 1.07 7.54 -51.93 -0.39 0.68 16 39 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.44 2.18 8.96 -40.82 -0.37 1.81 16 42 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16 43 H 0.10 2.24 6.21 -51.93 -0.32 1.91 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 46 H 0.38 10.87 6.89 -40.82 -0.28 10.59 16 47 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -39.99 375.58 -8.11 -48.11 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.64 Total: 8.27 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -1.59 Total: 15.61 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.80 Total: -70.26 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.28 Total: -25.48 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.99 -8.11 -48.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133305592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.319 kcal (2) G-P(sol) polarization free energy of solvation -39.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds