Wall clock time and date at job start Tue Mar 31 2020 21:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.44602 * 2 1 4 4 C 1.53039 * 109.45931 * 240.03465 * 2 1 3 5 5 C 1.52760 * 109.38459 * 301.22146 * 4 2 1 6 6 N 1.46931 * 109.00543 * 305.58756 * 5 4 2 7 7 C 1.34777 * 120.63086 * 233.58109 * 6 5 4 8 8 O 1.21283 * 119.99750 * 179.72075 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.02562 * 7 6 5 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 11 11 C 1.34775 * 124.17858 * 269.72119 * 10 9 7 12 12 O 1.21236 * 127.15384 * 0.02562 * 11 10 9 13 13 C 1.51582 * 105.68734 * 179.97438 * 11 10 9 14 14 N 1.47312 * 103.59110 * 0.32066 * 13 11 10 15 15 C 1.33794 * 124.18140 * 90.02435 * 10 9 7 16 16 O 1.21541 * 123.77158 * 359.95913 * 15 10 9 17 17 C 1.46925 * 118.73924 * 53.31068 * 6 5 4 18 18 C 1.53042 * 109.45921 * 119.96469 * 2 1 3 19 19 H 1.08998 * 109.49757 * 178.60640 * 18 2 1 20 20 C 1.52997 * 109.52566 * 298.69062 * 18 2 1 21 21 N 1.46495 * 109.47191 * 184.85467 * 20 18 2 22 22 C 1.36936 * 120.00099 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00023 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00216 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99820 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00267 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47198 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47819 * 120.00099 * 26 24 22 29 29 H 1.48501 * 109.47147 * 240.00232 * 26 24 22 30 30 H 1.08997 * 109.46918 * 300.03622 * 1 2 3 31 31 H 1.09009 * 109.46893 * 60.03120 * 1 2 3 32 32 H 1.08996 * 109.46744 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49958 * 61.29724 * 4 2 1 34 34 H 1.09000 * 109.49401 * 181.36254 * 4 2 1 35 35 H 1.08997 * 109.51122 * 185.71191 * 5 4 2 36 36 H 1.09000 * 109.43557 * 65.42042 * 5 4 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.08998 * 110.76404 * 241.71443 * 13 11 10 40 40 H 1.08993 * 110.43515 * 118.76698 * 13 11 10 41 41 H 0.97003 * 126.69138 * 179.76965 * 14 13 11 42 42 H 1.09005 * 109.58470 * 66.42378 * 17 6 5 43 43 H 1.08995 * 109.58817 * 186.71135 * 17 6 5 44 44 H 1.08999 * 109.46996 * 304.85356 * 20 18 2 45 45 H 1.09006 * 109.47330 * 64.84881 * 20 18 2 46 46 H 0.96997 * 119.99845 * 359.97438 * 21 20 18 47 47 H 0.96997 * 120.00098 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.5045 -2.1514 -1.2643 6 7 1.8626 -2.8088 0.0000 7 6 2.5164 -3.9874 0.0000 8 8 2.8108 -4.5175 1.0503 9 6 2.8878 -4.6431 -1.3051 10 7 3.5911 -5.8999 -1.0374 11 6 4.9278 -6.0054 -0.9014 12 8 5.7440 -5.1118 -0.9743 13 6 5.1983 -7.4732 -0.6370 14 7 3.8575 -8.0828 -0.6645 15 6 2.9864 -7.0858 -0.9035 16 8 1.7846 -7.2450 -0.9896 17 6 1.4996 -2.1542 1.2642 18 6 2.0399 -0.7207 1.2501 19 1 3.1296 -0.7428 1.2384 20 6 1.5575 0.0191 2.4994 21 7 2.1406 -0.6027 3.6908 22 6 1.8500 -0.1068 4.9337 23 1 1.1907 0.7426 5.0357 24 6 2.4020 -0.6963 6.0627 25 7 3.2043 -1.7324 5.9386 26 14 2.0052 -0.0203 7.7582 27 1 1.0858 1.1385 7.6264 28 1 1.3555 -1.0779 8.5734 29 1 3.2592 0.4166 8.4229 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6958 -0.1934 -2.1399 34 1 3.1296 -0.7423 -1.2385 35 1 1.9465 -2.6972 -2.0979 36 1 0.4200 -2.1317 -1.3716 37 1 1.9839 -4.8476 -1.8791 38 1 3.5367 -3.9776 -1.8743 39 1 5.6622 -7.6109 0.3397 40 1 5.8262 -7.8921 -1.4233 41 1 3.6442 -9.0202 -0.5353 42 1 0.4146 -2.1347 1.3673 43 1 1.9361 -2.7032 2.0985 44 1 1.8673 1.0628 2.4458 45 1 0.4703 -0.0347 2.5565 46 1 2.7324 -1.3657 3.5993 47 1 3.5898 -2.1446 6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133305592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:17 Heat of formation + Delta-G solvation = -88.944026 kcal Electronic energy + Delta-G solvation = -30628.618376 eV Core-core repulsion = 26425.570350 eV Total energy + Delta-G solvation = -4203.048026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.43501 -41.46276 -39.71517 -39.35720 -37.23640 -36.68785 -35.73366 -34.94796 -33.52598 -31.69256 -30.14772 -28.72879 -28.47684 -26.95833 -25.71994 -24.92775 -23.98344 -22.60912 -22.39725 -20.80377 -19.59830 -19.14005 -18.95852 -18.69725 -17.87969 -17.64785 -17.17077 -16.81694 -16.47907 -16.34583 -16.24793 -16.08132 -15.71306 -15.33431 -15.32428 -15.07598 -15.00117 -14.64814 -14.46824 -14.23381 -14.09015 -13.79733 -13.36411 -13.07643 -12.98705 -12.90327 -12.65808 -12.46732 -12.21318 -12.13079 -12.01086 -11.92962 -11.74777 -11.71204 -11.42482 -11.34893 -11.22350 -10.96612 -10.68972 -10.43090 -9.66154 -9.03559 -7.97254 -5.28030 0.57482 0.98409 1.41700 1.42930 1.45309 1.55423 1.73345 2.08065 2.25302 2.53097 3.00062 3.32581 3.35864 3.67592 3.68956 3.78689 3.84599 4.01704 4.07113 4.14985 4.22528 4.26741 4.28963 4.30888 4.39671 4.52554 4.55953 4.62715 4.70458 4.76767 4.81310 4.90504 4.99842 5.08959 5.18577 5.24343 5.29961 5.39916 5.45058 5.47812 5.60925 5.79033 5.93246 6.23324 6.25388 6.34077 6.98188 7.05579 7.28428 8.04886 8.27055 9.26664 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.003349 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.936539 B = 8357.825033 C =10078.681518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.093 3.907 6 N -0.601 5.601 7 C 0.486 3.514 8 O -0.586 6.586 9 C 0.105 3.895 10 N -0.570 5.570 11 C 0.515 3.485 12 O -0.500 6.500 13 C 0.076 3.924 14 N -0.708 5.708 15 C 0.699 3.301 16 O -0.583 6.583 17 C 0.130 3.870 18 C -0.089 4.089 19 H 0.048 0.952 20 C 0.159 3.841 21 N -0.749 5.749 22 C -0.245 4.245 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.974 5.974 26 Si 0.978 3.022 27 H -0.261 1.261 28 H -0.294 1.294 29 H -0.292 1.292 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.173 0.827 41 H 0.455 0.545 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.030 0.970 46 H 0.369 0.631 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -8.236 -26.275 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.161 4.161 5 C -0.027 4.027 6 N -0.334 5.334 7 C 0.273 3.727 8 O -0.466 6.466 9 C -0.019 4.019 10 N -0.315 5.315 11 C 0.305 3.695 12 O -0.372 6.372 13 C -0.051 4.051 14 N -0.373 5.373 15 C 0.400 3.600 16 O -0.460 6.460 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.066 0.934 20 C 0.033 3.967 21 N -0.392 5.392 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.625 5.625 26 Si 0.806 3.194 27 H -0.185 1.185 28 H -0.221 1.221 29 H -0.219 1.219 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.190 0.810 41 H 0.303 0.697 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.200 0.800 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.005 -7.898 -25.743 26.927 hybrid contribution 0.126 -0.327 1.904 1.936 sum 0.121 -8.225 -23.839 25.218 Atomic orbital electron populations 1.21961 0.93960 1.02092 1.02600 1.21080 0.96945 0.99376 0.92495 0.90112 1.21889 1.00926 0.94745 0.98563 1.22207 1.02482 0.94145 0.83912 1.48208 1.56312 1.20192 1.08660 1.21569 0.77472 0.81552 0.92075 1.90757 1.55604 1.64764 1.35432 1.21679 1.01773 0.84213 0.94269 1.46017 1.09967 1.09028 1.66480 1.21709 0.81040 0.93250 0.73549 1.90822 1.50767 1.47375 1.48223 1.22722 0.86504 0.86735 1.09094 1.45323 1.06291 1.10449 1.75227 1.15995 0.85280 0.81357 0.77398 1.90983 1.13237 1.84122 1.57660 1.21363 0.99508 0.92792 0.85599 1.21545 0.99222 0.94082 0.96054 0.93389 1.20875 0.95978 0.94831 0.85031 1.42709 1.57057 1.37286 1.02130 1.19723 1.22420 1.10560 0.84976 0.90208 1.25680 1.00550 0.98933 1.02047 1.69888 1.37503 1.25965 1.29100 0.85008 0.77236 0.77612 0.79518 1.18504 1.22142 1.21930 0.93535 0.89824 0.92656 0.86485 0.92098 0.86683 0.88708 0.83136 0.82996 0.83822 0.81021 0.69737 0.90889 0.93772 0.95761 0.95175 0.79983 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.11 71.98 0.58 -2.32 16 2 C -0.08 -1.77 2.71 -10.76 -0.03 -1.80 16 3 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 4 C -0.12 -1.90 5.61 30.53 0.17 -1.73 16 5 C 0.09 1.47 5.85 86.22 0.50 1.97 16 6 N -0.60 -16.97 2.98 -819.72 -2.44 -19.41 16 7 C 0.49 15.75 7.77 87.66 0.68 16.43 16 8 O -0.59 -26.27 15.84 -3.04 -0.05 -26.32 16 9 C 0.11 2.25 4.53 85.64 0.39 2.64 16 10 N -0.57 -13.27 2.09 -777.22 -1.63 -14.90 16 11 C 0.51 11.03 8.32 87.94 0.73 11.77 16 12 O -0.50 -13.97 17.75 -2.89 -0.05 -14.02 16 13 C 0.08 0.77 7.97 85.76 0.68 1.45 16 14 N -0.71 -9.65 6.58 -480.32 -3.16 -12.81 16 15 C 0.70 16.67 8.62 179.44 1.55 18.21 16 16 O -0.58 -18.25 17.48 -3.84 -0.07 -18.32 16 17 C 0.13 4.73 5.05 86.36 0.44 5.16 16 18 C -0.09 -3.03 2.15 -10.72 -0.02 -3.05 16 19 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 20 C 0.16 6.64 5.19 86.38 0.45 7.09 16 21 N -0.75 -41.25 5.38 -343.46 -1.85 -43.10 16 22 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 23 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 24 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 25 N -0.97 -64.44 13.06 21.65 0.28 -64.16 16 26 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 30 H 0.05 1.07 6.58 -2.39 -0.02 1.05 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.10 4.99 -2.39 -0.01 1.09 16 33 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.12 1.00 5.93 -2.39 -0.01 0.99 16 36 H 0.09 1.22 6.70 -2.39 -0.02 1.21 16 37 H 0.15 2.38 7.67 -2.38 -0.02 2.36 16 38 H 0.15 2.30 7.54 -2.39 -0.02 2.28 16 39 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.46 3.63 8.96 -92.71 -0.83 2.80 16 42 H 0.07 2.54 6.69 -2.38 -0.02 2.52 16 43 H 0.04 2.13 6.21 -2.39 -0.01 2.11 16 44 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.03 1.23 6.73 -2.38 -0.02 1.21 16 46 H 0.37 22.40 6.89 -92.71 -0.64 21.76 16 47 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -95.64 375.58 0.06 -95.58 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.44 Total: 29.14 kcal Atomic # 6 Polarization: 30.29 SS G_CDS: 7.43 Total: 37.72 kcal Atomic # 7 Polarization: -145.59 SS G_CDS: -8.79 Total: -154.38 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.17 Total: -58.65 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -95.64 0.06 -95.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133305592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.634 kcal (2) G-P(sol) polarization free energy of solvation -95.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds