Wall clock time and date at job start Tue Mar 31 2020 21:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46221 * 2 1 4 4 C 1.53039 * 109.45764 * 119.97095 * 2 1 3 5 5 C 1.53191 * 109.31416 * 58.63972 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34784 * 120.62829 * 126.41175 * 6 5 4 8 8 O 1.21276 * 119.99470 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 6 5 10 10 N 1.46507 * 109.46991 * 179.97438 * 9 7 6 11 11 C 1.34768 * 124.17476 * 269.72701 * 10 9 7 12 12 O 1.21233 * 127.15962 * 0.02562 * 11 10 9 13 13 C 1.51582 * 105.68028 * 179.97438 * 11 10 9 14 14 N 1.47310 * 103.59457 * 0.32056 * 13 11 10 15 15 C 1.33782 * 124.17571 * 90.02393 * 10 9 7 16 16 O 1.21543 * 123.77218 * 359.96351 * 15 10 9 17 17 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 18 18 C 1.53070 * 109.33608 * 240.10872 * 2 1 3 19 19 H 1.08997 * 109.38860 * 181.25916 * 18 2 1 20 20 C 1.52997 * 109.62317 * 61.15383 * 18 2 1 21 21 N 1.46493 * 109.47466 * 175.10532 * 20 18 2 22 22 C 1.36942 * 120.00327 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99623 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99882 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00403 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99683 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46766 * 90.00135 * 26 24 22 28 28 H 1.48502 * 109.46925 * 209.99785 * 26 24 22 29 29 H 1.48497 * 109.47171 * 329.99663 * 26 24 22 30 30 H 1.09008 * 109.47356 * 300.02917 * 1 2 3 31 31 H 1.08998 * 109.46845 * 60.02730 * 1 2 3 32 32 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49876 * 298.68950 * 4 2 1 34 34 H 1.09005 * 109.52615 * 178.61199 * 4 2 1 35 35 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 36 36 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 37 37 H 1.09000 * 109.47595 * 299.99863 * 9 7 6 38 38 H 1.09005 * 109.47205 * 60.00098 * 9 7 6 39 39 H 1.08997 * 110.76583 * 241.71405 * 13 11 10 40 40 H 1.09008 * 110.56334 * 118.82817 * 13 11 10 41 41 H 0.96999 * 126.69120 * 179.76512 * 14 13 11 42 42 H 1.09002 * 109.58751 * 173.39743 * 17 6 5 43 43 H 1.08996 * 109.58750 * 293.67928 * 17 6 5 44 44 H 1.09004 * 109.47223 * 295.10786 * 20 18 2 45 45 H 1.09000 * 109.47085 * 55.10317 * 20 18 2 46 46 H 0.97004 * 119.99550 * 0.02562 * 21 20 18 47 47 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 1.4992 -2.1541 1.2643 6 7 1.8619 -2.8089 0.0000 7 6 2.5148 -3.9881 -0.0001 8 8 2.8082 -4.5186 -1.0504 9 6 2.8802 -4.6470 1.3050 10 7 3.5773 -5.9075 1.0373 11 6 2.9624 -7.0994 0.9048 12 8 1.7732 -7.3223 0.9813 13 6 4.0669 -8.1029 0.6389 14 7 5.2914 -7.2843 0.6617 15 6 4.9035 -6.0183 0.8998 16 8 5.6720 -5.0804 0.9823 17 6 1.4990 -2.1542 -1.2642 18 6 2.0368 -0.7198 -1.2522 19 1 3.1266 -0.7399 -1.2419 20 6 1.5509 0.0182 -2.5012 21 7 2.1328 -0.6035 -3.6932 22 6 1.8382 -0.1097 -4.9361 23 1 1.1773 0.7384 -5.0374 24 6 2.3892 -0.6993 -6.0656 25 7 3.1943 -1.7332 -5.9421 26 14 1.9880 -0.0252 -7.7609 27 1 2.9795 1.0183 -8.1260 28 1 2.0389 -1.1262 -8.7561 29 1 0.6267 0.5681 -7.7483 30 1 -0.3634 0.5143 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6959 -0.1935 2.1398 34 1 3.1296 -0.7431 1.2388 35 1 0.4143 -2.1345 1.3675 36 1 1.9378 -2.7018 2.0984 37 1 3.5315 -3.9855 1.8764 38 1 1.9742 -4.8477 1.8769 39 1 3.9369 -8.5712 -0.3367 40 1 4.0956 -8.8578 1.4247 41 1 6.2002 -7.5970 0.5306 42 1 1.9374 -2.7019 -2.0984 43 1 0.4141 -2.1368 -1.3684 44 1 0.4637 -0.0375 -2.5563 45 1 1.8589 1.0625 -2.4490 46 1 2.7261 -1.3655 -3.6022 47 1 3.5789 -2.1454 -6.7314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133305594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:27 Heat of formation + Delta-G solvation = -56.191270 kcal Electronic energy + Delta-G solvation = -30627.171921 eV Core-core repulsion = 26425.544162 eV Total energy + Delta-G solvation = -4201.627760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58473 -40.29433 -38.78118 -38.10827 -36.29730 -34.98992 -34.82620 -33.53822 -31.87002 -30.04501 -29.13776 -27.89683 -27.41170 -25.34952 -24.65712 -23.17502 -23.12439 -21.46730 -21.16241 -19.66855 -18.38429 -18.25159 -17.69444 -17.06276 -16.98447 -16.62116 -16.14440 -15.54038 -15.31823 -15.23273 -14.99581 -14.88761 -14.39640 -14.30577 -14.24935 -13.81244 -13.60204 -13.51200 -13.29848 -12.97820 -12.72394 -12.46838 -12.33604 -11.95332 -11.64284 -11.28536 -11.19129 -11.06255 -10.88839 -10.76841 -10.62211 -10.59896 -10.52210 -10.27188 -10.15524 -9.92151 -9.80285 -9.58742 -9.45313 -8.80897 -8.47801 -6.84459 -5.67613 -2.97449 1.40026 1.80886 2.59007 2.70719 2.87610 3.12286 3.48497 3.52835 3.55291 3.71652 4.31956 4.43069 4.60577 4.65955 4.67224 4.78930 4.82673 4.86846 4.92038 5.09258 5.19007 5.26129 5.30984 5.33561 5.56381 5.63476 5.68252 5.70074 5.82555 5.90406 5.97107 6.03851 6.17659 6.34275 6.36917 6.38809 6.48070 6.58480 6.64394 6.75207 6.80734 6.92915 7.08785 7.42141 7.76207 7.87244 8.17729 8.49939 9.60819 10.19275 10.53227 11.54685 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003351 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.971540 B = 8353.073099 C =10073.666788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.103 3.897 6 N -0.605 5.605 7 C 0.498 3.502 8 O -0.519 6.519 9 C 0.102 3.898 10 N -0.562 5.562 11 C 0.526 3.474 12 O -0.467 6.467 13 C 0.066 3.934 14 N -0.728 5.728 15 C 0.707 3.293 16 O -0.537 6.537 17 C 0.121 3.879 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.442 0.558 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -9.654 23.448 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.340 5.340 7 C 0.283 3.717 8 O -0.394 6.394 9 C -0.023 4.023 10 N -0.308 5.308 11 C 0.314 3.686 12 O -0.337 6.337 13 C -0.062 4.062 14 N -0.393 5.393 15 C 0.408 3.592 16 O -0.410 6.410 17 C 0.000 4.000 18 C -0.122 4.122 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.287 0.713 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.045 -9.404 22.842 24.724 hybrid contribution 0.406 0.058 -1.070 1.146 sum -0.639 -9.346 21.772 23.702 Atomic orbital electron populations 1.21994 0.95210 1.01977 1.01836 1.21075 0.96017 0.99449 0.93843 0.90741 1.21949 1.01361 0.94856 0.98613 1.21828 1.00713 0.94041 0.85409 1.48102 1.57165 1.20592 1.08111 1.20616 0.78338 0.81607 0.91106 1.90792 1.52752 1.63112 1.32773 1.21519 0.99561 0.84352 0.96893 1.45830 1.08428 1.09829 1.66671 1.20893 0.89431 0.83737 0.74564 1.90827 1.14162 1.81882 1.46808 1.22443 0.82563 0.94657 1.06510 1.45333 1.09811 1.06985 1.77140 1.15755 0.81700 0.84323 0.77448 1.91041 1.54695 1.40048 1.55176 1.21759 0.99948 0.92971 0.85354 1.21695 1.00981 0.94306 0.95215 0.90788 1.20669 0.95954 0.94720 0.85341 1.42430 1.56916 1.37668 1.00791 1.19199 1.23313 1.10996 0.83772 0.91244 1.24755 1.00053 0.98288 0.97799 1.69678 1.35511 1.24114 1.28472 0.86212 0.77751 0.77747 0.84605 1.21782 1.21808 1.20793 0.93118 0.91761 0.92449 0.90669 0.91290 0.90624 0.90431 0.85665 0.85900 0.85610 0.85828 0.71320 0.87983 0.91220 0.95943 0.96156 0.78127 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 2 C -0.08 -1.03 2.71 -90.56 -0.25 -1.28 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.25 5.63 -26.61 -0.15 -1.40 16 5 C 0.10 0.97 5.87 -3.71 -0.02 0.95 16 6 N -0.61 -8.52 2.97 -172.77 -0.51 -9.03 16 7 C 0.50 7.84 7.77 -10.98 -0.09 7.75 16 8 O -0.52 -10.82 15.84 5.56 0.09 -10.73 16 9 C 0.10 1.14 4.53 -5.19 -0.02 1.12 16 10 N -0.56 -6.69 2.09 -122.02 -0.26 -6.95 16 11 C 0.53 5.67 8.32 -10.56 -0.09 5.58 16 12 O -0.47 -6.23 17.75 5.60 0.10 -6.13 16 13 C 0.07 0.40 7.97 -4.32 -0.03 0.37 16 14 N -0.73 -5.72 6.58 -65.74 -0.43 -6.16 16 15 C 0.71 8.85 8.62 -88.03 -0.76 8.09 16 16 O -0.54 -8.73 17.48 5.33 0.09 -8.64 16 17 C 0.12 2.08 5.04 -3.71 -0.02 2.06 16 18 C -0.10 -1.70 2.15 -90.48 -0.19 -1.89 16 19 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.16 3.28 5.19 -4.05 -0.02 3.26 16 21 N -0.73 -19.32 5.38 -59.91 -0.32 -19.64 16 22 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.51 13.06 55.49 0.72 -28.79 16 26 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.80 6.56 -51.93 -0.34 0.45 16 32 H 0.06 0.64 4.98 -51.93 -0.26 0.38 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.63 6.69 -51.93 -0.35 0.28 16 36 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 37 H 0.13 1.17 7.41 -51.93 -0.38 0.78 16 38 H 0.12 1.02 7.80 -51.93 -0.40 0.62 16 39 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.12 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.44 2.33 8.96 -40.82 -0.37 1.97 16 42 H 0.10 2.24 6.21 -51.93 -0.32 1.91 16 43 H 0.07 1.15 6.70 -51.93 -0.35 0.80 16 44 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.38 10.93 6.89 -40.82 -0.28 10.65 16 47 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -40.09 375.59 -8.11 -48.19 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.64 Total: 8.50 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: -1.59 Total: 15.60 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -0.80 Total: -70.56 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.28 Total: -25.50 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.09 -8.11 -48.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133305594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -40.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds