Wall clock time and date at job start Tue Mar 31 2020 22:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 C 1.52999 * 109.46704 * 240.00313 * 2 1 3 5 5 C 1.53003 * 109.46980 * 175.00015 * 4 2 1 6 6 H 1.09000 * 109.46753 * 54.99982 * 5 4 2 7 7 C 1.52993 * 109.47243 * 174.99877 * 5 4 2 8 8 N 1.46502 * 109.46832 * 295.00245 * 5 4 2 9 9 C 1.34774 * 119.99926 * 155.00295 * 8 5 4 10 10 O 1.21280 * 119.99904 * 359.97438 * 9 8 5 11 11 C 1.50702 * 119.99783 * 179.97438 * 9 8 5 12 12 N 1.46504 * 109.46993 * 179.97438 * 11 9 8 13 13 C 1.36835 * 119.69298 * 89.99756 * 12 11 9 14 14 C 1.35018 * 119.68617 * 179.72271 * 13 12 11 15 15 C 1.41569 * 119.11424 * 0.02562 * 14 13 12 16 16 O 1.21786 * 120.30810 * 180.02562 * 15 14 13 17 17 N 1.34840 * 119.38972 * 359.97438 * 15 14 13 18 18 C 1.46493 * 119.87148 * 179.97438 * 17 15 14 19 19 C 1.34546 * 119.68776 * 269.72461 * 12 11 9 20 20 O 1.21586 * 119.53577 * 0.27657 * 19 12 11 21 21 N 1.46495 * 109.47092 * 120.00467 * 2 1 3 22 22 C 1.36939 * 119.99870 * 274.99920 * 21 2 1 23 23 H 1.07994 * 120.00239 * 359.97438 * 22 21 2 24 24 C 1.38810 * 120.00133 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99813 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00213 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47029 * 89.99897 * 26 24 22 28 28 H 1.48502 * 109.47256 * 210.00140 * 26 24 22 29 29 H 1.48504 * 109.47054 * 329.99621 * 26 24 22 30 30 H 1.08996 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47029 * 299.99629 * 1 2 3 32 32 H 1.08992 * 109.47498 * 59.99593 * 1 2 3 33 33 H 1.08996 * 109.47303 * 55.00124 * 4 2 1 34 34 H 1.09006 * 109.47080 * 294.99753 * 4 2 1 35 35 H 1.09000 * 109.47417 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47478 * 299.99773 * 7 5 4 37 37 H 1.09008 * 109.47279 * 60.00048 * 7 5 4 38 38 H 0.97002 * 119.99845 * 334.99192 * 8 5 4 39 39 H 1.08997 * 109.46966 * 59.99763 * 11 9 8 40 40 H 1.08993 * 109.46967 * 299.99460 * 11 9 8 41 41 H 1.08004 * 120.15300 * 359.74675 * 13 12 11 42 42 H 1.08001 * 120.44090 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47342 * 0.02562 * 18 17 15 44 44 H 1.09008 * 109.46961 * 120.00301 * 18 17 15 45 45 H 1.09001 * 109.47536 * 240.00099 * 18 17 15 46 46 H 0.97001 * 120.00652 * 94.99834 * 21 2 1 47 47 H 0.97005 * 119.99998 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3869 7 6 4.0850 -1.4382 -2.4926 8 7 3.9478 0.7895 -1.4924 9 6 5.1611 1.2136 -1.0868 10 8 5.9355 0.4341 -0.5734 11 6 5.5554 2.6564 -1.2711 12 7 6.9100 2.8625 -0.7526 13 6 7.9856 2.6985 -1.5825 14 6 9.2337 2.8940 -1.1060 15 6 9.4032 3.2658 0.2494 16 8 10.5191 3.4481 0.7018 17 7 8.3176 3.4173 1.0347 18 6 8.4808 3.8013 2.4390 19 6 7.0846 3.2166 0.5336 20 8 6.1149 3.3569 1.2535 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8927 1.0403 2.4242 24 6 2.6123 -0.6619 3.5089 25 7 2.9253 -1.9390 3.4498 26 14 2.7914 0.2701 5.1179 27 1 1.5241 0.1789 5.8864 28 1 3.8964 -0.3231 5.9132 29 1 3.0963 1.6953 4.8332 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6053 -0.2616 -2.1370 34 1 1.7515 -1.7715 -1.2057 35 1 5.1713 -1.3610 -2.5388 36 1 3.8000 -2.4818 -2.3597 37 1 3.6544 -1.0592 -3.4195 38 1 3.3283 1.4129 -1.9028 39 1 4.8582 3.2955 -0.7293 40 1 5.5297 2.9074 -2.3314 41 1 7.8368 2.4144 -2.6138 42 1 10.0913 2.7683 -1.7504 43 1 9.5410 3.9186 2.6628 44 1 7.9651 4.7445 2.6200 45 1 8.0575 3.0271 3.0790 46 1 2.2490 -1.6319 1.1526 47 1 3.2494 -2.3961 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134540203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:38 Heat of formation + Delta-G solvation = -53.338319 kcal Electronic energy + Delta-G solvation = -30666.481045 eV Core-core repulsion = 26464.976998 eV Total energy + Delta-G solvation = -4201.504047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42175 -39.90710 -38.86842 -37.43165 -36.70466 -35.23700 -34.50866 -32.45612 -32.03698 -30.84986 -28.62437 -28.44059 -27.49240 -26.35768 -23.97811 -23.68277 -23.52673 -21.62564 -20.50489 -19.76077 -19.36879 -18.04360 -17.80470 -17.14436 -17.11277 -16.54332 -16.13189 -15.43596 -15.25914 -15.12412 -14.69730 -14.40024 -13.97870 -13.90797 -13.76665 -13.74844 -13.55942 -13.27086 -13.08924 -12.78162 -12.40825 -12.34630 -12.13327 -12.07109 -11.90344 -11.76014 -11.64167 -11.05504 -10.92228 -10.79773 -10.59928 -10.47395 -10.34597 -10.21449 -9.89589 -9.88643 -9.78842 -9.58503 -8.87006 -8.83292 -8.72252 -6.89291 -5.69301 -2.97339 0.84235 1.67786 1.96935 2.65378 2.85442 3.19385 3.48487 3.49661 3.56018 3.58155 4.14274 4.35056 4.61649 4.66686 4.68165 4.91291 5.03836 5.08259 5.28389 5.33331 5.33958 5.36670 5.44189 5.52860 5.61418 5.64069 5.68477 5.83634 5.86807 5.87561 5.98219 6.09148 6.22350 6.25225 6.28595 6.40868 6.53001 6.63432 6.74072 6.88551 7.06297 7.09753 7.44097 7.58431 7.77392 7.84026 8.31238 8.48967 9.60816 10.16617 10.50241 11.53365 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004191 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.463487 B = 6678.709272 C = 8672.967216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.106 0.894 7 C -0.159 4.159 8 N -0.710 5.710 9 C 0.498 3.502 10 O -0.519 6.519 11 C 0.090 3.910 12 N -0.517 5.517 13 C 0.187 3.813 14 C -0.301 4.301 15 C 0.550 3.450 16 O -0.525 6.525 17 N -0.555 5.555 18 C 0.078 3.922 19 C 0.695 3.305 20 O -0.520 6.520 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.396 0.604 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.176 0.824 42 H 0.171 0.829 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.382 0.618 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 10.654 -18.411 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.124 0.876 7 C -0.218 4.218 8 N -0.362 5.362 9 C 0.281 3.719 10 O -0.394 6.394 11 C -0.036 4.036 12 N -0.237 5.237 13 C 0.063 3.937 14 C -0.328 4.328 15 C 0.346 3.654 16 O -0.401 6.401 17 N -0.299 5.299 18 C -0.063 4.063 19 C 0.398 3.602 20 O -0.390 6.390 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.732 3.268 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.229 0.771 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.193 0.807 42 H 0.188 0.812 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.216 0.784 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.215 10.396 -17.120 20.971 hybrid contribution -0.258 0.290 0.723 0.821 sum 5.957 10.686 -16.397 20.458 Atomic orbital electron populations 1.22462 0.99548 1.00800 0.99773 1.20217 0.91590 0.95511 0.86534 0.93668 1.22174 0.93505 1.02346 0.98902 1.21072 0.95304 0.79655 0.99958 0.87628 1.22171 1.01348 1.00343 0.97926 1.45864 1.15901 1.12011 1.62375 1.20538 0.82916 0.89602 0.78862 1.90793 1.51138 1.55833 1.41650 1.21764 0.82588 0.97051 1.02191 1.44275 1.07818 1.62372 1.09188 1.22285 0.86038 0.88988 0.96434 1.21828 0.97699 1.17266 0.96046 1.17379 0.83964 0.76981 0.87039 1.90852 1.23096 1.50243 1.75947 1.46278 1.06072 1.63039 1.14503 1.21919 1.04650 1.02017 0.77692 1.15802 0.83922 0.78832 0.81665 1.91108 1.37763 1.54082 1.56075 1.42393 1.77981 1.10521 1.05295 1.19137 1.36397 0.93636 0.87280 0.91506 1.24672 1.02068 0.95913 0.97971 1.69647 1.51011 1.08655 1.28764 0.86272 0.77138 0.79161 0.84227 1.21865 1.21843 1.20667 0.93551 0.92883 0.94739 0.91980 0.90559 0.92638 0.91635 0.93062 0.77055 0.85008 0.85707 0.80680 0.81208 0.88085 0.90396 0.90070 0.78398 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.14 2.84 -67.93 -0.19 2.95 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.84 4.29 -26.73 -0.11 -1.96 16 5 C 0.14 2.13 2.52 -67.93 -0.17 1.95 16 6 H 0.11 2.18 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -1.93 9.48 37.15 0.35 -1.57 16 8 N -0.71 -8.70 4.45 -53.81 -0.24 -8.94 16 9 C 0.50 6.96 7.86 -10.99 -0.09 6.87 16 10 O -0.52 -10.05 16.09 5.56 0.09 -9.96 16 11 C 0.09 0.84 5.82 -5.19 -0.03 0.81 16 12 N -0.52 -5.95 2.10 -122.82 -0.26 -6.21 16 13 C 0.19 1.55 10.38 -16.46 -0.17 1.38 16 14 C -0.30 -3.01 10.00 -39.46 -0.39 -3.41 16 15 C 0.55 7.69 7.45 -14.96 -0.11 7.58 16 16 O -0.52 -8.61 16.44 5.11 0.08 -8.53 16 17 N -0.55 -8.10 2.96 -131.49 -0.39 -8.49 16 18 C 0.08 1.03 10.00 59.84 0.60 1.62 16 19 C 0.70 10.71 8.12 -87.28 -0.71 10.00 16 20 O -0.52 -9.84 15.79 5.29 0.08 -9.76 16 21 N -0.72 -17.61 4.49 -53.43 -0.24 -17.85 16 22 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 26 Si 0.90 23.67 29.55 -169.99 -5.02 18.64 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 29 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 39 H 0.13 1.27 7.37 -51.93 -0.38 0.89 16 40 H 0.13 0.44 8.03 -51.93 -0.42 0.02 16 41 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.10 1.22 6.90 -51.93 -0.36 0.86 16 44 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -40.27 396.92 -7.31 -47.59 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.21 Total: 9.10 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -0.92 Total: 16.65 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.40 Total: -69.72 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: 0.26 Total: -28.24 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -40.27 -7.31 -47.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134540203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.753 kcal (2) G-P(sol) polarization free energy of solvation -40.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds