Wall clock time and date at job start Tue Mar 31 2020 22:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47035 * 119.99739 * 2 1 3 5 5 C 1.52997 * 109.47049 * 185.00124 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.34770 * 120.00256 * 205.00145 * 8 5 4 10 10 O 1.21283 * 120.00026 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99922 * 180.02562 * 9 8 5 12 12 N 1.46509 * 109.47017 * 179.97438 * 11 9 8 13 13 C 1.36831 * 119.68715 * 89.99995 * 12 11 9 14 14 C 1.35027 * 119.68267 * 179.97438 * 13 12 11 15 15 C 1.41576 * 119.11270 * 359.97438 * 14 13 12 16 16 O 1.21779 * 120.30621 * 180.02562 * 15 14 13 17 17 N 1.34830 * 119.38477 * 0.02562 * 15 14 13 18 18 C 1.46500 * 119.86648 * 179.97438 * 17 15 14 19 19 C 1.34541 * 119.68735 * 269.72370 * 12 11 9 20 20 O 1.21585 * 119.53902 * 0.02562 * 19 12 11 21 21 N 1.46501 * 109.47050 * 239.99623 * 2 1 3 22 22 C 1.36935 * 119.99647 * 85.00479 * 21 2 1 23 23 H 1.08001 * 120.00212 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99839 * 180.02562 * 22 21 2 25 25 N 1.31623 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00036 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46930 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46778 * 119.99775 * 26 24 22 29 29 H 1.48496 * 109.47036 * 239.99635 * 26 24 22 30 30 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47061 * 300.00404 * 1 2 3 32 32 H 1.09000 * 109.46883 * 59.99999 * 1 2 3 33 33 H 1.08998 * 109.47250 * 65.00006 * 4 2 1 34 34 H 1.08998 * 109.47252 * 304.99929 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 36 36 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 37 37 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 38 38 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 39 39 H 1.08991 * 109.47241 * 299.99575 * 11 9 8 40 40 H 1.09000 * 109.47273 * 60.00364 * 11 9 8 41 41 H 1.07997 * 120.15933 * 359.97438 * 13 12 11 42 42 H 1.07998 * 120.44019 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47480 * 0.02562 * 18 17 15 44 44 H 1.09004 * 109.47319 * 119.99650 * 18 17 15 45 45 H 1.08994 * 109.47605 * 239.99576 * 18 17 15 46 46 H 0.97001 * 119.99978 * 264.99691 * 21 2 1 47 47 H 0.96999 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4926 8 7 3.9480 0.7895 1.4924 9 6 5.1611 1.2136 1.0867 10 8 5.9359 0.4339 0.5740 11 6 5.5555 2.6564 1.2710 12 7 6.9106 2.8622 0.7536 13 6 7.0894 3.2166 -0.5559 14 6 8.3383 3.4068 -1.0326 15 6 9.4415 3.2349 -0.1620 16 8 10.5771 3.4013 -0.5688 17 7 9.2230 2.8852 1.1217 18 6 10.3568 2.7040 2.0316 19 6 7.9671 2.7064 1.5719 20 8 7.7852 2.3957 2.7332 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6114 -0.6621 -3.5092 25 7 2.9243 -1.9392 -3.4501 26 14 2.7892 0.2696 -5.1185 27 1 2.3755 1.6821 -4.9210 28 1 4.2060 0.2265 -5.5614 29 1 1.9281 -0.3591 -6.1521 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.6546 -1.0592 3.4195 36 1 3.8001 -2.4818 2.3596 37 1 5.1715 -1.3617 2.5382 38 1 3.3284 1.4129 1.9028 39 1 4.8584 3.2956 0.7294 40 1 5.5299 2.9074 2.3314 41 1 6.2357 3.3436 -1.2051 42 1 8.4936 3.6871 -2.0639 43 1 11.2867 2.8938 1.4957 44 1 10.2692 3.4015 2.8647 45 1 10.3580 1.6825 2.4117 46 1 2.2491 -1.6319 -1.1525 47 1 3.2476 -2.3965 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134540217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:47 Heat of formation + Delta-G solvation = -55.735295 kcal Electronic energy + Delta-G solvation = -30449.365467 eV Core-core repulsion = 26247.757480 eV Total energy + Delta-G solvation = -4201.607987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48469 -39.91998 -38.92358 -37.47895 -36.73326 -35.31635 -34.53996 -32.47984 -32.08675 -30.85777 -28.69306 -28.49314 -27.53051 -26.36493 -24.01032 -23.75537 -23.60398 -21.63674 -20.50982 -19.80390 -19.37039 -18.08237 -17.84008 -17.22484 -17.17643 -16.60221 -16.14035 -15.59405 -15.24171 -15.12535 -14.71871 -14.43013 -14.04047 -13.91605 -13.82562 -13.76622 -13.60307 -13.30801 -13.13885 -12.81272 -12.49313 -12.37893 -12.16566 -12.04446 -11.94397 -11.78963 -11.66776 -11.11143 -11.04582 -10.89503 -10.68242 -10.49589 -10.38608 -10.26886 -9.95333 -9.94555 -9.84416 -9.67953 -8.94238 -8.85971 -8.71753 -6.97871 -5.78512 -3.07042 0.87515 1.62830 1.88066 2.67537 2.78401 3.17166 3.40110 3.43512 3.45651 3.48437 4.24299 4.39401 4.56113 4.61695 4.72793 4.86680 4.98395 5.07403 5.16789 5.24633 5.31955 5.35737 5.41933 5.44823 5.55377 5.56361 5.64362 5.82883 5.88807 5.89130 5.96004 6.06608 6.22923 6.23068 6.31377 6.36883 6.50655 6.61534 6.70964 6.84205 7.00850 7.02863 7.34387 7.58359 7.65499 7.75984 8.31236 8.39524 9.50766 10.08573 10.42401 11.44152 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.003715 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.527279 B = 7534.847552 C = 9369.244972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.106 0.894 7 C -0.161 4.161 8 N -0.710 5.710 9 C 0.498 3.502 10 O -0.520 6.520 11 C 0.090 3.910 12 N -0.516 5.516 13 C 0.189 3.811 14 C -0.300 4.300 15 C 0.550 3.450 16 O -0.523 6.523 17 N -0.556 5.556 18 C 0.080 3.920 19 C 0.701 3.299 20 O -0.539 6.539 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.396 0.604 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.181 0.819 42 H 0.173 0.827 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 11.716 13.901 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.124 0.876 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.281 3.719 10 O -0.395 6.395 11 C -0.036 4.036 12 N -0.235 5.235 13 C 0.066 3.934 14 C -0.326 4.326 15 C 0.347 3.653 16 O -0.399 6.399 17 N -0.300 5.300 18 C -0.061 4.061 19 C 0.404 3.596 20 O -0.412 6.412 21 N -0.363 5.363 22 C -0.368 4.368 23 H 0.085 0.915 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.733 3.267 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.230 0.770 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.198 0.802 42 H 0.190 0.810 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.948 11.134 13.937 18.512 hybrid contribution -0.357 0.308 -0.915 1.029 sum 4.591 11.442 13.022 17.933 Atomic orbital electron populations 1.22465 0.99536 1.00869 0.99768 1.20211 0.91569 0.95402 0.86549 0.93715 1.22178 0.93546 1.02384 0.98879 1.21063 0.95180 0.79653 0.99954 0.87588 1.22180 1.01554 1.00232 0.97996 1.45862 1.15952 1.12028 1.62304 1.20519 0.82713 0.89759 0.78885 1.90796 1.50700 1.55786 1.42172 1.21781 0.80903 0.96633 1.04271 1.44248 1.07182 1.62398 1.09667 1.22430 1.00199 0.87264 0.83526 1.21878 0.89982 1.17826 1.02956 1.17404 0.90856 0.76272 0.80735 1.90853 1.24045 1.50126 1.74871 1.46298 1.07207 1.63150 1.13374 1.21874 0.87813 1.03391 0.93019 1.15741 0.80224 0.78611 0.85010 1.90996 1.83782 1.51036 1.15398 1.42421 1.77985 1.10616 1.05288 1.19169 1.36645 0.93675 0.87350 0.91463 1.24709 1.02152 0.95904 0.97927 1.69653 1.50699 1.08637 1.28741 0.86214 0.77380 0.78709 0.84416 1.20688 1.21864 1.21939 0.93526 0.94701 0.92901 0.90543 0.91951 0.93031 0.91672 0.92575 0.77042 0.85337 0.85282 0.80168 0.80974 0.88061 0.90501 0.90410 0.78340 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.49 37.16 0.35 -2.32 16 2 C 0.17 2.96 2.84 -67.93 -0.19 2.76 16 3 H 0.04 0.75 7.56 -51.93 -0.39 0.36 16 4 C -0.13 -1.81 4.29 -26.73 -0.11 -1.92 16 5 C 0.15 2.15 2.52 -67.93 -0.17 1.98 16 6 H 0.11 2.12 7.06 -51.93 -0.37 1.76 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.78 16 8 N -0.71 -8.71 4.45 -53.80 -0.24 -8.95 16 9 C 0.50 6.97 7.86 -10.99 -0.09 6.89 16 10 O -0.52 -10.06 16.09 5.55 0.09 -9.98 16 11 C 0.09 0.84 5.82 -5.19 -0.03 0.81 16 12 N -0.52 -5.94 2.10 -122.82 -0.26 -6.20 16 13 C 0.19 1.91 10.38 -16.46 -0.17 1.74 16 14 C -0.30 -3.39 10.00 -39.45 -0.39 -3.78 16 15 C 0.55 7.65 7.45 -14.96 -0.11 7.54 16 16 O -0.52 -8.50 16.44 5.12 0.08 -8.42 16 17 N -0.56 -7.37 2.96 -131.50 -0.39 -7.76 16 18 C 0.08 0.86 10.00 59.85 0.60 1.46 16 19 C 0.70 9.61 8.12 -87.29 -0.71 8.90 16 20 O -0.54 -8.31 15.78 5.29 0.08 -8.23 16 21 N -0.72 -16.58 4.49 -53.42 -0.24 -16.82 16 22 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 23 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 26 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 39 H 0.13 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.13 1.01 7.36 -51.93 -0.38 0.63 16 41 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.10 1.04 6.90 -51.93 -0.36 0.68 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -37.24 396.91 -7.31 -44.55 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.21 Total: 10.32 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -0.92 Total: 15.56 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -0.40 Total: -66.51 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: 0.26 Total: -26.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.24 -7.31 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134540217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.181 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds