Wall clock time and date at job start Tue Mar 31 2020 22:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46905 * 109.47150 * 64.99960 * 5 4 2 9 9 C 1.46897 * 111.00060 * 204.99892 * 8 5 4 10 10 C 1.50702 * 109.46987 * 180.02562 * 9 8 5 11 11 O 1.21295 * 119.99801 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99844 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99749 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00248 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99589 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00459 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99619 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47352 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47237 * 120.00306 * 17 15 13 20 20 H 1.48505 * 109.46740 * 240.00315 * 17 15 13 21 21 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 22 22 C 1.34777 * 119.99688 * 274.99602 * 21 2 1 23 23 O 1.21279 * 119.99974 * 0.02562 * 22 21 2 24 24 C 1.50698 * 119.99799 * 180.02562 * 22 21 2 25 25 C 1.50702 * 109.46933 * 180.02562 * 24 22 21 26 26 C 1.41379 * 128.00699 * 269.68108 * 25 24 22 27 27 N 1.30184 * 106.39313 * 179.89838 * 26 25 24 28 28 O 1.20922 * 111.60532 * 0.38609 * 27 26 25 29 29 C 1.34041 * 111.56447 * 359.74990 * 28 27 26 30 30 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 31 31 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 37 37 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 38 38 H 1.00897 * 110.99884 * 81.04905 * 8 5 4 39 39 H 1.08993 * 109.47480 * 300.00075 * 9 8 5 40 40 H 1.09005 * 109.46926 * 60.00263 * 9 8 5 41 41 H 0.97003 * 120.00430 * 359.97438 * 12 10 9 42 42 H 0.96996 * 119.99962 * 179.97438 * 16 15 13 43 43 H 0.96993 * 119.99992 * 94.99462 * 21 2 1 44 44 H 1.08995 * 109.47366 * 299.99979 * 24 22 21 45 45 H 1.08996 * 109.47113 * 60.00496 * 24 22 21 46 46 H 1.07995 * 126.80493 * 0.03002 * 26 25 24 47 47 H 1.08000 * 126.77554 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1552 -1.3362 -0.1794 9 6 5.4833 -0.8026 0.1511 10 6 6.0564 -1.5676 1.3162 11 8 5.4211 -2.4690 1.8212 12 7 7.2748 -1.2501 1.7970 13 6 7.7959 -1.9457 2.8573 14 1 7.2303 -2.7483 3.3070 15 6 9.0523 -1.6187 3.3527 16 7 9.7408 -0.6424 2.8052 17 14 9.7626 -2.5670 4.7969 18 1 8.7962 -3.6086 5.2286 19 1 11.0361 -3.2117 4.3875 20 1 10.0198 -1.6339 5.9232 21 7 2.0184 -0.6907 1.1962 22 6 2.1471 -0.0184 2.3571 23 8 1.8583 1.1582 2.4117 24 6 2.6500 -0.7288 3.5874 25 6 2.7001 0.2394 4.7412 26 6 3.7771 1.0640 5.1396 27 7 3.3654 1.7289 6.1804 28 8 2.2297 1.4363 6.4750 29 6 1.7256 0.5167 5.6402 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7515 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1370 35 1 5.1508 -1.1485 -2.6699 36 1 3.7721 -2.2741 -2.6701 37 1 3.6262 -0.6886 -3.4658 38 1 4.1998 -2.3269 -0.3656 39 1 6.1419 -0.9074 -0.7110 40 1 5.3959 0.2513 0.4156 41 1 7.7831 -0.5294 1.3929 42 1 10.6176 -0.4139 3.1513 43 1 2.2490 -1.6319 1.1525 44 1 1.9778 -1.5510 3.8325 45 1 3.6493 -1.1205 3.3978 46 1 4.7483 1.1308 4.6719 47 1 0.7375 0.0822 5.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135261739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:15 Heat of formation + Delta-G solvation = -39.690170 kcal Electronic energy + Delta-G solvation = -30539.122566 eV Core-core repulsion = 26338.210348 eV Total energy + Delta-G solvation = -4200.912218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.90969 -40.74546 -40.06149 -38.41723 -36.17966 -35.72571 -35.38567 -33.27685 -33.19116 -32.67075 -31.29763 -29.32769 -27.90963 -27.55945 -25.62316 -24.09821 -23.32889 -22.05976 -21.66374 -21.02416 -20.92369 -19.85880 -18.86090 -18.60283 -17.84849 -17.56649 -17.22961 -16.65086 -16.35287 -16.21980 -15.92117 -15.81830 -15.44144 -15.29996 -14.79994 -14.62536 -14.28915 -14.21409 -13.91935 -13.82777 -13.53629 -13.48721 -13.34263 -13.13622 -12.97398 -12.85336 -12.74117 -12.54680 -12.36103 -12.19795 -12.12654 -12.10716 -11.67814 -11.56575 -11.46260 -11.32353 -10.81792 -10.24887 -10.24746 -9.96684 -9.80695 -9.10649 -8.44446 -5.91416 0.61910 1.25569 1.35649 1.41528 1.54007 1.88041 2.10647 2.28561 2.39373 2.65143 2.99514 3.24647 3.35700 3.61554 3.77135 3.80585 3.98099 4.13293 4.17065 4.28053 4.32205 4.36444 4.45335 4.49269 4.57193 4.62632 4.66398 4.68669 4.78140 4.83776 4.87113 4.92782 5.00960 5.07275 5.10755 5.17649 5.32328 5.32892 5.44307 5.45965 5.87425 5.96003 6.15794 6.55406 6.62716 6.89536 7.16285 7.31784 7.55859 7.61744 8.14645 8.73407 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.004783 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.005320 B = 5852.703982 C = 9036.166491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.053 0.947 4 C -0.104 4.104 5 C 0.082 3.918 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.658 5.658 9 C 0.067 3.933 10 C 0.447 3.553 11 O -0.604 6.604 12 N -0.579 5.579 13 C -0.320 4.320 14 H 0.085 0.915 15 C -0.015 4.015 16 N -0.925 5.925 17 Si 0.984 3.016 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.279 1.279 21 N -0.680 5.680 22 C 0.521 3.479 23 O -0.594 6.594 24 C -0.059 4.059 25 C -0.189 4.189 26 C -0.017 4.017 27 N -0.396 5.396 28 O 0.095 5.905 29 C -0.036 4.036 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.347 0.653 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.391 0.609 42 H 0.274 0.726 43 H 0.413 0.587 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.175 0.825 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 -1.761 -8.552 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.071 0.929 4 C -0.142 4.142 5 C -0.028 4.028 6 H 0.084 0.916 7 C -0.235 4.235 8 N -0.290 5.290 9 C -0.066 4.066 10 C 0.234 3.766 11 O -0.489 6.489 12 N -0.216 5.216 13 C -0.449 4.449 14 H 0.103 0.897 15 C -0.214 4.214 16 N -0.567 5.567 17 Si 0.809 3.191 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.205 1.205 21 N -0.331 5.331 22 C 0.307 3.693 23 O -0.476 6.476 24 C -0.100 4.100 25 C -0.194 4.194 26 C -0.194 4.194 27 N -0.101 5.101 28 O 0.030 5.970 29 C -0.118 4.118 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.167 0.833 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.224 0.776 42 H 0.083 0.917 43 H 0.251 0.749 44 H 0.152 0.848 45 H 0.113 0.887 46 H 0.192 0.808 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -18.357 -0.182 -6.887 19.607 hybrid contribution 2.017 -0.991 -0.827 2.395 sum -16.340 -1.173 -7.714 18.107 Atomic orbital electron populations 1.22118 0.94639 1.02645 1.01938 1.20846 0.93829 0.96125 0.84817 0.92877 1.21879 0.93304 1.02144 0.96836 1.21690 0.95209 0.97774 0.88141 0.91622 1.22433 1.00829 1.01959 0.98266 1.60256 1.20239 1.08335 1.40220 1.21450 0.91478 0.98601 0.95075 1.20679 0.81984 0.86583 0.87375 1.90465 1.60855 1.34394 1.63210 1.41989 1.16227 1.33079 1.30344 1.19673 1.00670 1.15313 1.09284 0.89691 1.25952 0.96520 0.97671 1.01280 1.69684 1.13821 1.30076 1.43080 0.84980 0.78211 0.78130 0.77765 1.19258 1.19845 1.20502 1.45792 1.64640 1.14681 1.07978 1.20452 0.76738 0.86593 0.85496 1.90648 1.53084 1.17712 1.86136 1.19859 1.04946 0.96472 0.88674 1.21005 0.94036 1.03280 1.01068 1.25078 1.02596 0.96525 0.95248 1.73812 0.96147 1.22295 1.17825 1.84721 1.20585 1.45679 1.46006 1.26475 1.01861 0.92935 0.90495 0.90352 0.91149 0.94515 0.89741 0.87962 0.93819 0.91603 0.90518 0.83311 0.92508 0.90106 0.77571 0.91667 0.74900 0.84820 0.88664 0.80791 0.72262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.15 2.91 2.57 44.99 0.12 3.03 16 3 H 0.05 1.36 7.58 -2.39 -0.02 1.34 16 4 C -0.10 -1.43 4.54 30.59 0.14 -1.29 16 5 C 0.08 1.46 2.59 44.91 0.12 1.58 16 6 H 0.07 1.36 7.80 -2.39 -0.02 1.34 16 7 C -0.18 -2.63 9.16 71.98 0.66 -1.97 16 8 N -0.66 -15.83 3.48 -495.58 -1.72 -17.55 16 9 C 0.07 2.06 5.97 85.56 0.51 2.57 16 10 C 0.45 18.96 7.82 87.66 0.69 19.65 16 11 O -0.60 -28.13 15.78 -3.08 -0.05 -28.18 16 12 N -0.58 -28.17 5.29 -306.97 -1.62 -29.79 16 13 C -0.32 -17.32 9.68 84.04 0.81 -16.51 16 14 H 0.09 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 16 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 17 Si 0.98 42.81 29.55 68.60 2.03 44.83 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 N -0.68 -15.60 3.80 -442.53 -1.68 -17.29 16 22 C 0.52 15.22 7.79 87.66 0.68 15.91 16 23 O -0.59 -21.76 15.70 -3.03 -0.05 -21.81 16 24 C -0.06 -1.64 6.28 29.10 0.18 -1.46 16 25 C -0.19 -5.73 4.82 -19.73 -0.10 -5.83 16 26 C -0.02 -0.60 12.16 85.71 1.04 0.44 16 27 N -0.40 -14.23 12.07 -59.24 -0.72 -14.94 16 28 O 0.09 2.83 11.20 71.63 0.80 3.63 16 29 C -0.04 -0.88 12.26 67.18 0.82 -0.05 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.77 7.45 -2.39 -0.02 0.75 16 36 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.35 8.48 8.17 -89.70 -0.73 7.75 16 39 H 0.06 1.62 7.43 -2.39 -0.02 1.60 16 40 H 0.08 2.57 8.06 -2.38 -0.02 2.55 16 41 H 0.39 18.80 7.90 -92.71 -0.73 18.07 16 42 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.41 8.87 7.59 -92.71 -0.70 8.17 16 44 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.17 6.57 8.06 -2.91 -0.02 6.55 16 47 H 0.26 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.12 398.69 2.95 -68.18 By element: Atomic # 1 Polarization: 49.99 SS G_CDS: -1.15 Total: 48.84 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.83 Total: 13.89 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -5.46 Total: -129.39 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: 0.71 Total: -46.36 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.12 2.95 -68.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135261739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.486 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds