Wall clock time and date at job start Tue Mar 31 2020 22:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47051 * 240.00023 * 2 1 3 5 5 C 1.53004 * 109.47153 * 175.00159 * 4 2 1 6 6 H 1.09001 * 109.46650 * 304.99850 * 5 4 2 7 7 C 1.52999 * 109.47217 * 185.00210 * 5 4 2 8 8 N 1.46494 * 109.47302 * 64.99835 * 5 4 2 9 9 C 1.36936 * 120.00365 * 205.00297 * 8 5 4 10 10 H 1.08011 * 119.99682 * 0.02562 * 9 8 5 11 11 C 1.38807 * 120.00433 * 179.97438 * 9 8 5 12 12 N 1.31624 * 119.99935 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00212 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47174 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47209 * 120.00331 * 13 11 9 16 16 H 1.48498 * 109.47538 * 240.00626 * 13 11 9 17 17 N 1.46504 * 109.47031 * 120.00092 * 2 1 3 18 18 C 1.34778 * 119.99627 * 274.99658 * 17 2 1 19 19 O 1.21643 * 120.00377 * 355.18065 * 18 17 2 20 20 C 1.47076 * 119.99443 * 175.17371 * 18 17 2 21 21 C 1.38126 * 120.95185 * 173.53617 * 20 18 17 22 22 N 1.35831 * 119.31894 * 179.79337 * 21 20 18 23 23 C 1.46504 * 119.25218 * 180.23291 * 22 21 20 24 24 C 1.34227 * 121.50041 * 0.50126 * 22 21 20 25 25 O 1.21561 * 118.93773 * 179.75705 * 24 22 21 26 26 N 1.34402 * 122.12810 * 359.73241 * 24 22 21 27 27 C 1.46494 * 119.78365 * 180.02562 * 26 24 22 28 28 C 1.34981 * 120.43525 * 0.02562 * 26 24 22 29 29 O 1.21670 * 120.73326 * 180.02562 * 28 26 24 30 30 H 1.08999 * 109.47323 * 299.99607 * 1 2 3 31 31 H 1.09002 * 109.47572 * 60.00286 * 1 2 3 32 32 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47270 * 294.99756 * 4 2 1 34 34 H 1.09001 * 109.47458 * 55.00037 * 4 2 1 35 35 H 1.08996 * 109.47372 * 59.99190 * 7 5 4 36 36 H 1.08997 * 109.47150 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.46641 * 299.99764 * 7 5 4 38 38 H 0.97004 * 120.00030 * 24.99847 * 8 5 4 39 39 H 0.97000 * 119.99879 * 180.02562 * 12 11 9 40 40 H 0.97002 * 119.99958 * 95.28069 * 17 2 1 41 41 H 1.08005 * 120.33792 * 0.03059 * 21 20 18 42 42 H 1.09003 * 109.46968 * 270.26202 * 23 22 21 43 43 H 1.08994 * 109.46785 * 30.25571 * 23 22 21 44 44 H 1.08995 * 109.47156 * 150.26254 * 23 22 21 45 45 H 1.09002 * 109.47573 * 180.02562 * 27 26 24 46 46 H 1.09004 * 109.47267 * 300.02135 * 27 26 24 47 47 H 1.09006 * 109.47653 * 60.02279 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2806 10 1 5.9385 -0.1788 -0.1879 11 6 5.9520 -1.6683 1.3528 12 7 5.2886 -2.6511 1.9242 13 14 7.6447 -1.1932 1.9841 14 1 8.1760 -0.0661 1.1761 15 1 7.5441 -0.7778 3.4063 16 1 8.5596 -2.3574 1.8720 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.9421 1.1803 2.3918 20 6 2.5351 -0.7337 3.5821 21 6 2.8016 -0.0480 4.7511 22 7 3.1532 -0.7425 5.8643 23 6 3.4305 -0.0141 7.1048 24 6 3.2575 -2.0807 5.8522 25 8 3.5798 -2.6548 6.8741 26 7 3.0166 -2.8065 4.7469 27 6 3.1453 -4.2651 4.7918 28 6 2.6567 -2.2003 3.5958 29 8 2.4369 -2.8520 2.5922 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.6263 -0.6887 -3.4657 36 1 5.1507 -1.1477 -2.6702 37 1 3.7722 -2.2741 -2.6699 38 1 3.6647 -2.0584 0.2386 39 1 5.6782 -3.1279 2.6737 40 1 2.2528 -1.6308 1.1516 41 1 2.7275 1.0291 4.7808 42 1 4.4883 0.2460 7.1446 43 1 2.8313 0.8959 7.1334 44 1 3.1784 -0.6423 7.9591 45 1 2.9138 -4.6807 3.8111 46 1 4.1657 -4.5314 5.0675 47 1 2.4524 -4.6686 5.5302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135613694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:20 Heat of formation + Delta-G solvation = -68.065479 kcal Electronic energy + Delta-G solvation = -32326.974533 eV Core-core repulsion = 28124.831869 eV Total energy + Delta-G solvation = -4202.142664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.26595 -40.78411 -39.76085 -38.52828 -37.96761 -36.30156 -35.65197 -33.91193 -32.95114 -31.63777 -30.14509 -29.30512 -27.86964 -27.55065 -25.56319 -25.47612 -24.48013 -22.69304 -21.61110 -21.26878 -20.19982 -19.06283 -18.97324 -18.35702 -18.19503 -17.21580 -16.81057 -16.59792 -16.56622 -15.92527 -15.87856 -15.63606 -15.50921 -15.35302 -14.95660 -14.58682 -14.46904 -14.22621 -14.07295 -13.82200 -13.54392 -13.38006 -13.29224 -13.27281 -13.12603 -12.90691 -12.78954 -12.56131 -12.35220 -12.23901 -12.10108 -12.05893 -11.69037 -11.54699 -11.38009 -11.17770 -10.84313 -10.81211 -10.76314 -9.80396 -9.43670 -8.74320 -7.72702 -4.99034 -0.23618 0.84429 0.89197 1.38848 1.44332 1.49441 1.83713 2.01290 2.52424 2.60788 2.80256 3.25186 3.54239 3.69711 3.87493 4.00890 4.11106 4.16293 4.23762 4.33811 4.41557 4.44562 4.45676 4.48058 4.56141 4.61378 4.75463 4.77637 4.79814 4.86873 4.89957 4.98617 5.02687 5.11007 5.16500 5.17370 5.24799 5.41408 5.45532 5.63385 5.66365 5.93713 6.11391 6.39071 6.43874 6.83067 7.01710 7.50308 7.56219 8.27135 8.53050 9.42309 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.005887 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.018816 B = 4755.011973 C = 6023.697753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.065 0.935 4 C -0.121 4.121 5 C 0.160 3.840 6 H 0.034 0.966 7 C -0.153 4.153 8 N -0.721 5.721 9 C -0.226 4.226 10 H 0.056 0.944 11 C -0.051 4.051 12 N -0.917 5.917 13 Si 0.935 3.065 14 H -0.279 1.279 15 H -0.303 1.303 16 H -0.302 1.302 17 N -0.688 5.688 18 C 0.592 3.408 19 O -0.596 6.596 20 C -0.330 4.330 21 C 0.251 3.749 22 N -0.523 5.523 23 C 0.067 3.933 24 C 0.687 3.313 25 O -0.561 6.561 26 N -0.552 5.552 27 C 0.089 3.911 28 C 0.569 3.431 29 O -0.497 6.497 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.042 0.958 38 H 0.376 0.624 39 H 0.236 0.764 40 H 0.413 0.587 41 H 0.222 0.778 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 4.564 5.689 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.160 4.160 5 C 0.052 3.948 6 H 0.052 0.948 7 C -0.213 4.213 8 N -0.364 5.364 9 C -0.359 4.359 10 H 0.074 0.926 11 C -0.246 4.246 12 N -0.567 5.567 13 Si 0.768 3.232 14 H -0.205 1.205 15 H -0.231 1.231 16 H -0.231 1.231 17 N -0.345 5.345 18 C 0.380 3.620 19 O -0.481 6.481 20 C -0.343 4.343 21 C 0.122 3.878 22 N -0.239 5.239 23 C -0.072 4.072 24 C 0.391 3.609 25 O -0.437 6.437 26 N -0.294 5.294 27 C -0.052 4.052 28 C 0.363 3.637 29 O -0.369 6.369 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.211 0.789 39 H 0.046 0.954 40 H 0.258 0.742 41 H 0.238 0.762 42 H 0.103 0.897 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.283 4.627 5.819 12.689 hybrid contribution 1.688 -0.752 0.482 1.910 sum -8.596 3.875 6.300 11.340 Atomic orbital electron populations 1.22101 0.93868 1.02235 1.02619 1.20998 0.94399 0.96563 0.84481 0.91706 1.22126 0.95209 1.00965 0.97665 1.20509 0.92023 0.94610 0.87670 0.94802 1.22274 1.00088 1.00548 0.98366 1.42612 1.17804 1.40226 1.35795 1.19286 0.94312 1.12203 1.10085 0.92606 1.25054 0.99880 0.99682 0.99983 1.69877 1.37035 1.24544 1.25255 0.85645 0.83246 0.76824 0.77457 1.20452 1.23093 1.23058 1.46431 1.63814 1.15919 1.08289 1.17076 0.76060 0.85652 0.83235 1.90658 1.55994 1.14546 1.86865 1.21584 1.23215 0.92331 0.97121 1.23136 0.81931 1.00021 0.82709 1.44621 1.60537 1.05062 1.13726 1.22579 1.04517 0.98022 0.82076 1.15950 0.78960 0.82153 0.83880 1.90945 1.52257 1.69172 1.31332 1.46129 1.62234 1.11106 1.09971 1.21857 1.03429 0.74934 1.04934 1.18220 0.75524 0.87885 0.82060 1.90571 1.48323 1.66558 1.31481 0.93678 0.89220 0.92317 0.91836 0.87058 0.91042 0.95153 0.93916 0.78922 0.95432 0.74187 0.76173 0.89739 0.84827 0.88390 0.88629 0.91181 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.48 71.98 0.68 -3.32 16 2 C 0.14 4.71 2.61 44.99 0.12 4.83 16 3 H 0.06 2.41 7.51 -2.39 -0.02 2.39 16 4 C -0.12 -3.74 4.43 30.60 0.14 -3.60 16 5 C 0.16 6.18 2.89 44.99 0.13 6.31 16 6 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 7 C -0.15 -5.28 9.49 71.98 0.68 -4.59 16 8 N -0.72 -34.65 3.84 -322.94 -1.24 -35.89 16 9 C -0.23 -12.24 9.93 84.03 0.83 -11.40 16 10 H 0.06 3.07 7.83 -2.90 -0.02 3.05 16 11 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 12 N -0.92 -51.11 12.00 21.65 0.26 -50.85 16 13 Si 0.94 46.21 29.55 68.60 2.03 48.24 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 16 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 17 N -0.69 -27.47 3.69 -446.13 -1.65 -29.12 16 18 C 0.59 24.24 7.71 86.56 0.67 24.91 16 19 O -0.60 -25.10 16.05 -4.17 -0.07 -25.16 16 20 C -0.33 -12.34 6.05 -18.64 -0.11 -12.45 16 21 C 0.25 7.02 9.96 84.05 0.84 7.86 16 22 N -0.52 -13.57 2.97 -679.09 -2.02 -15.58 16 23 C 0.07 1.02 10.31 127.77 1.32 2.34 16 24 C 0.69 22.57 8.09 179.34 1.45 24.02 16 25 O -0.56 -19.42 15.61 -3.91 -0.06 -19.48 16 26 N -0.55 -19.74 2.96 -800.68 -2.37 -22.11 16 27 C 0.09 2.83 9.96 127.77 1.27 4.10 16 28 C 0.57 22.73 7.19 86.56 0.62 23.35 16 29 O -0.50 -22.01 12.81 -4.25 -0.05 -22.06 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.38 19.30 5.70 -92.71 -0.53 18.77 16 39 H 0.24 13.30 8.31 -92.71 -0.77 12.53 16 40 H 0.41 17.97 3.39 -92.71 -0.31 17.65 16 41 H 0.22 4.56 7.69 -2.91 -0.02 4.53 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.13 0.92 8.01 -2.39 -0.02 0.91 16 44 H 0.10 1.52 7.31 -2.39 -0.02 1.51 16 45 H 0.10 3.22 6.92 -2.39 -0.02 3.20 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -72.42 384.74 4.09 -68.33 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: 0.16 Total: 43.72 kcal Atomic # 6 Polarization: 50.87 SS G_CDS: 9.11 Total: 59.97 kcal Atomic # 7 Polarization: -146.53 SS G_CDS: -7.02 Total: -153.55 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -0.18 Total: -66.71 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -72.42 4.09 -68.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135613694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.260 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds