Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.47332 * 2 1 4 4 C 1.53004 * 109.46947 * 240.00231 * 2 1 3 5 5 C 1.53004 * 109.47006 * 174.99913 * 4 2 1 6 6 H 1.09000 * 109.46424 * 55.00250 * 5 4 2 7 7 C 1.52998 * 109.46927 * 174.99853 * 5 4 2 8 8 N 1.46495 * 109.47264 * 294.99943 * 5 4 2 9 9 C 1.34774 * 120.00168 * 154.99816 * 8 5 4 10 10 O 1.21280 * 119.99835 * 0.02562 * 9 8 5 11 11 C 1.50697 * 119.99961 * 179.97438 * 9 8 5 12 12 C 1.53008 * 109.46844 * 180.02562 * 11 9 8 13 13 N 1.46495 * 109.47050 * 180.02562 * 12 11 9 14 14 C 1.37897 * 120.06552 * 270.27316 * 13 12 11 15 15 C 1.32996 * 121.65676 * 180.29418 * 14 13 12 16 16 N 1.37895 * 121.65056 * 359.72042 * 15 14 13 17 17 H 0.97004 * 120.06358 * 179.97438 * 16 15 14 18 18 C 1.35066 * 119.87500 * 359.97438 * 16 15 14 19 19 O 1.21584 * 120.76287 * 179.97438 * 18 16 15 20 20 C 1.35069 * 120.06450 * 89.99942 * 13 12 11 21 21 O 1.21583 * 120.76254 * 0.02562 * 20 13 12 22 22 N 1.46495 * 109.46986 * 120.00104 * 2 1 3 23 23 C 1.36931 * 120.00314 * 274.99482 * 22 2 1 24 24 H 1.08005 * 119.99987 * 0.02562 * 23 22 2 25 25 C 1.38818 * 120.00322 * 180.02562 * 23 22 2 26 26 N 1.31620 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00002 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47124 * 90.00021 * 27 25 23 29 29 H 1.48501 * 109.46728 * 210.00157 * 27 25 23 30 30 H 1.48500 * 109.47175 * 330.00019 * 27 25 23 31 31 H 1.08998 * 109.46692 * 299.99692 * 1 2 3 32 32 H 1.09003 * 109.46888 * 59.99919 * 1 2 3 33 33 H 1.08993 * 109.47301 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46826 * 55.00074 * 4 2 1 35 35 H 1.08999 * 109.47148 * 294.99931 * 4 2 1 36 36 H 1.09001 * 109.47241 * 59.99937 * 7 5 4 37 37 H 1.08995 * 109.47356 * 180.02562 * 7 5 4 38 38 H 1.08998 * 109.47160 * 300.00034 * 7 5 4 39 39 H 0.97002 * 120.00155 * 335.00576 * 8 5 4 40 40 H 1.08995 * 109.47208 * 60.00603 * 11 9 8 41 41 H 1.08999 * 109.47444 * 300.00119 * 11 9 8 42 42 H 1.08995 * 109.46858 * 60.00226 * 12 11 9 43 43 H 1.08999 * 109.47065 * 300.00188 * 12 11 9 44 44 H 1.08001 * 119.17467 * 0.02562 * 14 13 12 45 45 H 1.07994 * 119.17583 * 179.73887 * 15 14 13 46 46 H 0.97000 * 119.99991 * 95.00207 * 22 2 1 47 47 H 0.96999 * 119.99454 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4382 -2.4926 8 7 3.9480 0.7894 -1.4925 9 6 5.1612 1.2135 -1.0868 10 8 5.9359 0.4339 -0.5741 11 6 5.5555 2.6563 -1.2711 12 6 6.9707 2.8712 -0.7307 13 7 7.3538 4.2739 -0.9094 14 6 7.9792 4.6767 -2.0705 15 6 8.3458 5.9405 -2.2636 16 7 8.1143 6.9140 -1.3149 17 1 8.3918 7.8288 -1.4796 18 6 7.5004 6.5915 -0.1558 19 8 7.2886 7.4369 0.6919 20 6 7.0902 5.1761 0.0605 21 8 6.5356 4.8396 1.0888 22 7 2.0183 -0.6906 1.1961 23 6 2.1492 -0.0076 2.3757 24 1 1.8921 1.0403 2.4243 25 6 2.6124 -0.6619 3.5090 26 7 2.9263 -1.9387 3.4496 27 14 2.7903 0.2698 5.1182 28 1 1.5226 0.1777 5.8863 29 1 3.8953 -0.3228 5.9137 30 1 3.0942 1.6953 4.8339 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -0.2616 -2.1370 35 1 1.7517 -1.7715 -1.2057 36 1 3.6545 -1.0593 -3.4195 37 1 5.1714 -1.3617 -2.5383 38 1 3.8001 -2.4818 -2.3596 39 1 3.3285 1.4129 -1.9028 40 1 4.8584 3.2955 -0.7295 41 1 5.5299 2.9073 -2.3315 42 1 7.6676 2.2320 -1.2728 43 1 6.9968 2.6201 0.3296 44 1 8.1802 3.9468 -2.8407 45 1 8.8369 6.2110 -3.1866 46 1 2.2490 -1.6318 1.1525 47 1 3.2496 -2.3960 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135688072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -74.626434 kcal Electronic energy + Delta-G solvation = -29714.613002 eV Core-core repulsion = 25512.185833 eV Total energy + Delta-G solvation = -4202.427169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87142 -39.72460 -38.78700 -37.96481 -36.89344 -35.34039 -34.42920 -32.33102 -31.89380 -30.55319 -29.73088 -28.55253 -26.54257 -26.25967 -23.81379 -23.61934 -23.31154 -21.13001 -20.20569 -19.68843 -19.29058 -18.96262 -17.81372 -17.24433 -16.96001 -16.54673 -15.95968 -15.87936 -15.47311 -15.12559 -14.73814 -14.45368 -14.20833 -13.94618 -13.77829 -13.74128 -13.57422 -13.22739 -12.97831 -12.80767 -12.62898 -12.32865 -12.12718 -11.97999 -11.77267 -11.71432 -11.58223 -11.35090 -10.99389 -10.77349 -10.75405 -10.55679 -10.40845 -10.17167 -10.11144 -9.85067 -9.59064 -9.54934 -8.81566 -8.72003 -8.05260 -6.86361 -5.66931 -2.94845 0.96957 1.30946 2.01870 2.52676 2.89214 3.05182 3.46271 3.52672 3.59241 3.61508 3.73459 4.44967 4.63414 4.69042 4.70047 4.75271 4.96191 5.13371 5.14953 5.25191 5.42247 5.49847 5.52251 5.66684 5.68337 5.69953 5.79973 5.90184 5.93901 6.03113 6.14759 6.19532 6.26779 6.30511 6.35226 6.45922 6.58622 6.73246 6.82555 6.82600 6.94539 7.05873 7.10274 7.58362 7.76041 7.79718 8.49826 8.51720 9.63305 10.19587 10.53640 11.55736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003240 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.058440 B = 8640.352058 C =10372.005049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.106 0.894 7 C -0.159 4.159 8 N -0.715 5.715 9 C 0.520 3.480 10 O -0.533 6.533 11 C -0.157 4.157 12 C 0.117 3.883 13 N -0.518 5.518 14 C 0.024 3.976 15 C 0.003 3.997 16 N -0.628 5.628 17 H 0.417 0.583 18 C 0.498 3.502 19 O -0.484 6.484 20 C 0.489 3.511 21 O -0.464 6.464 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.067 0.933 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.901 3.099 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.172 0.828 45 H 0.173 0.827 46 H 0.382 0.618 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 12.917 -22.818 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.124 0.876 7 C -0.218 4.218 8 N -0.365 5.365 9 C 0.305 3.695 10 O -0.410 6.410 11 C -0.198 4.198 12 C -0.004 4.004 13 N -0.244 5.244 14 C -0.096 4.096 15 C -0.117 4.117 16 N -0.276 5.276 17 H 0.256 0.744 18 C 0.281 3.719 19 O -0.353 6.353 20 C 0.272 3.728 21 O -0.332 6.332 22 N -0.362 5.362 23 C -0.366 4.366 24 H 0.085 0.915 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.732 3.268 28 H -0.219 1.219 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.190 0.810 45 H 0.191 0.809 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.879 12.566 -21.021 26.408 hybrid contribution -0.121 0.847 0.471 0.976 sum 9.759 13.413 -20.550 26.409 Atomic orbital electron populations 1.22463 0.99598 1.00773 0.99747 1.20219 0.91542 0.95528 0.86572 0.93696 1.22169 0.93751 1.02214 0.98801 1.21044 0.95122 0.80083 0.99879 0.87592 1.22171 1.01401 1.00240 0.97976 1.45949 1.16338 1.11739 1.62517 1.20113 0.82255 0.89216 0.77942 1.90749 1.51159 1.56535 1.42539 1.21967 0.98572 0.95824 1.03452 1.21626 0.95309 0.77907 1.05552 1.45702 1.52758 1.10511 1.15460 1.21140 1.01435 0.96111 0.90887 1.20981 1.07110 0.87635 0.96015 1.43544 1.54922 1.13063 1.16022 0.74436 1.20415 0.79509 0.89641 0.82335 1.90936 1.52476 1.49203 1.42721 1.20350 0.81823 0.86019 0.84592 1.90985 1.38241 1.78382 1.25593 1.42382 1.77985 1.10523 1.05260 1.19156 1.36420 0.93688 0.87335 0.91519 1.24674 1.02086 0.95927 0.97942 1.69648 1.50993 1.08654 1.28746 0.86274 0.77164 0.79139 0.84214 1.21877 1.21782 1.20684 0.92904 0.94779 0.93545 0.92124 0.90647 0.93217 0.92570 0.91758 0.77250 0.88298 0.88647 0.87956 0.87444 0.81037 0.80946 0.78377 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.95 4.29 -26.73 -0.11 -2.06 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.11 2.22 7.06 -51.93 -0.37 1.85 16 7 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 8 N -0.71 -9.64 4.45 -53.81 -0.24 -9.88 16 9 C 0.52 7.67 7.79 -10.99 -0.09 7.58 16 10 O -0.53 -10.24 15.64 5.56 0.09 -10.15 16 11 C -0.16 -1.66 6.02 -27.88 -0.17 -1.83 16 12 C 0.12 1.27 4.70 -4.04 -0.02 1.25 16 13 N -0.52 -4.88 2.65 -116.82 -0.31 -5.19 16 14 C 0.02 0.12 10.25 -16.64 -0.17 -0.05 16 15 C 0.00 0.01 11.10 -16.64 -0.18 -0.17 16 16 N -0.63 -3.85 5.38 -12.60 -0.07 -3.92 16 17 H 0.42 1.52 8.93 -40.82 -0.36 1.15 16 18 C 0.50 5.86 8.03 -11.69 -0.09 5.76 16 19 O -0.48 -7.62 17.85 -10.30 -0.18 -7.80 16 20 C 0.49 6.52 7.73 -11.69 -0.09 6.43 16 21 O -0.46 -8.51 16.67 -10.30 -0.17 -8.68 16 22 N -0.72 -17.85 4.49 -53.42 -0.24 -18.09 16 23 C -0.23 -6.67 9.93 -15.06 -0.15 -6.82 16 24 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 27 Si 0.90 23.81 29.55 -169.99 -5.02 18.79 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 4.13 8.60 -40.82 -0.35 3.78 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.90 8.00 -51.93 -0.42 0.48 16 43 H 0.11 1.58 7.42 -51.93 -0.39 1.19 16 44 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 45 H 0.17 -0.15 8.06 -52.49 -0.42 -0.57 16 46 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -40.02 399.79 -7.44 -47.46 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.21 Total: 9.14 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.83 Total: 10.54 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.13 Total: -65.32 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.27 Total: -26.63 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -40.02 -7.44 -47.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135688072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.166 kcal (2) G-P(sol) polarization free energy of solvation -40.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds