Wall clock time and date at job start Tue Mar 31 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 N 1.46501 * 109.47133 * 179.97438 * 12 11 9 14 14 C 1.37891 * 120.06621 * 269.72938 * 13 12 11 15 15 C 1.32993 * 121.65465 * 179.69907 * 14 13 12 16 16 N 1.37897 * 121.65221 * 0.57734 * 15 14 13 17 17 H 0.96999 * 120.06380 * 179.72631 * 16 15 14 18 18 C 1.35066 * 119.87505 * 359.71540 * 16 15 14 19 19 O 1.21580 * 120.76785 * 179.97438 * 18 16 15 20 20 C 1.35074 * 120.05913 * 89.99903 * 13 12 11 21 21 O 1.21582 * 120.76511 * 0.02562 * 20 13 12 22 22 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 23 23 C 1.36943 * 119.99752 * 84.72207 * 22 2 1 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 2 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 2 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 34 34 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 35 35 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 36 36 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 37 37 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 38 38 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 39 39 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 40 40 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 41 41 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 42 42 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 43 43 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 44 44 H 1.07996 * 119.16855 * 359.97438 * 14 13 12 45 45 H 1.07994 * 119.17390 * 180.31755 * 15 14 13 46 46 H 0.97001 * 120.00384 * 265.00562 * 22 2 1 47 47 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 7 7.3525 4.2747 0.9065 14 6 7.0876 5.1941 -0.0863 15 6 7.4158 6.4763 0.0442 16 7 8.0485 6.9499 1.1742 17 1 8.2810 7.8891 1.2434 18 6 8.3438 6.1036 2.1846 19 8 8.9018 6.5036 3.1880 20 6 7.9706 4.6688 2.0411 21 8 8.2168 3.8708 2.9246 22 7 2.0184 -0.6906 -1.1962 23 6 2.1437 -0.0088 -2.3771 24 1 1.8868 1.0391 -2.4256 25 6 2.6010 -0.6645 -3.5120 26 7 2.9136 -1.9417 -3.4530 27 14 2.7727 0.2657 -5.1227 28 1 2.3606 1.6785 -4.9248 29 1 4.1876 0.2216 -5.5715 30 1 1.9070 -0.3634 -6.1523 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.6547 -1.0595 3.4193 37 1 3.8001 -2.4820 2.3594 38 1 5.1714 -1.3611 2.5385 39 1 3.3285 1.4128 1.9028 40 1 4.8579 3.2952 0.7277 41 1 5.5291 2.9083 2.3303 42 1 7.6673 2.2330 1.2707 43 1 6.9953 2.6201 -0.3314 44 1 6.5972 4.8656 -0.9907 45 1 7.1847 7.1630 -0.7567 46 1 2.2490 -1.6318 -1.1527 47 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135688074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:29 Heat of formation + Delta-G solvation = -76.600699 kcal Electronic energy + Delta-G solvation = -29601.991364 eV Core-core repulsion = 25399.478584 eV Total energy + Delta-G solvation = -4202.512779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90662 -39.73243 -38.82456 -37.99969 -36.91960 -35.36705 -34.46190 -32.36175 -31.93850 -30.55917 -29.73497 -28.61188 -26.56036 -26.27872 -23.83198 -23.68508 -23.34087 -21.13846 -20.21362 -19.72630 -19.31088 -18.98133 -17.83634 -17.29686 -17.00395 -16.59039 -16.02402 -15.85131 -15.48364 -15.15398 -14.79029 -14.51039 -14.21680 -13.97570 -13.87665 -13.76076 -13.40595 -13.30371 -13.02106 -12.88943 -12.62912 -12.33406 -12.15208 -11.98096 -11.82411 -11.74931 -11.61012 -11.35907 -11.05365 -10.86885 -10.78474 -10.63833 -10.43270 -10.23001 -10.16988 -9.90475 -9.64934 -9.58399 -8.90651 -8.72403 -8.06298 -6.93911 -5.75134 -3.03209 0.90731 1.31233 1.99315 2.50663 2.89562 3.01187 3.41647 3.44956 3.45613 3.49489 3.71568 4.51674 4.59091 4.63436 4.69806 4.76652 4.96602 5.14256 5.18148 5.32496 5.38374 5.44798 5.48481 5.60464 5.64624 5.70017 5.78225 5.88886 5.95036 6.00813 6.12361 6.18588 6.25407 6.28110 6.36316 6.42351 6.55945 6.70797 6.79347 6.80741 6.91546 7.00325 7.05352 7.52907 7.69267 7.75709 8.43038 8.49688 9.54207 10.12331 10.46462 11.47674 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.002959 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.269481 B = 9460.188827 C =10974.661118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.106 0.894 7 C -0.161 4.161 8 N -0.715 5.715 9 C 0.520 3.480 10 O -0.533 6.533 11 C -0.157 4.157 12 C 0.117 3.883 13 N -0.515 5.515 14 C 0.026 3.974 15 C 0.004 3.996 16 N -0.626 5.626 17 H 0.418 0.582 18 C 0.498 3.502 19 O -0.488 6.488 20 C 0.491 3.509 21 O -0.476 6.476 22 N -0.721 5.721 23 C -0.234 4.234 24 H 0.067 0.933 25 C -0.013 4.013 26 N -0.930 5.930 27 Si 0.903 3.097 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.394 0.606 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 16.175 9.306 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.124 0.876 7 C -0.220 4.220 8 N -0.366 5.366 9 C 0.305 3.695 10 O -0.410 6.410 11 C -0.198 4.198 12 C -0.005 4.005 13 N -0.240 5.240 14 C -0.094 4.094 15 C -0.116 4.116 16 N -0.273 5.273 17 H 0.256 0.744 18 C 0.280 3.720 19 O -0.358 6.358 20 C 0.275 3.725 21 O -0.346 6.346 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.085 0.915 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.228 0.772 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.193 0.807 45 H 0.192 0.808 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.238 15.232 9.988 18.953 hybrid contribution -0.326 0.929 -0.945 1.365 sum 4.912 16.161 9.043 19.160 Atomic orbital electron populations 1.22464 0.99599 1.00828 0.99729 1.20210 0.91492 0.95473 0.86578 0.93694 1.22170 0.93788 1.02241 0.98786 1.21038 0.95040 0.80077 0.99868 0.87580 1.22186 1.01562 1.00207 0.98029 1.45953 1.16357 1.11757 1.62492 1.20106 0.82144 0.89279 0.77979 1.90749 1.50939 1.56534 1.42759 1.21961 0.98043 0.95738 1.04046 1.21648 0.95841 0.78537 1.04425 1.45712 1.52199 1.10742 1.15382 1.21248 1.04919 0.88036 0.95233 1.21028 1.03367 0.95356 0.91896 1.43551 1.54594 1.13166 1.16003 0.74377 1.20383 0.80837 0.86979 0.83755 1.90923 1.39629 1.76776 1.28492 1.20323 0.80121 0.89124 0.82899 1.90908 1.51550 1.52834 1.39319 1.42414 1.77964 1.10661 1.05190 1.19182 1.36478 0.93647 0.87211 0.91500 1.24707 1.02313 0.95929 0.97914 1.69659 1.51012 1.08582 1.28607 0.86188 0.77290 0.78683 0.84416 1.20737 1.21933 1.22006 0.93532 0.94748 0.92928 0.92094 0.90637 0.93185 0.91743 0.92497 0.77241 0.88199 0.88701 0.87777 0.87519 0.80673 0.80754 0.78340 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.10 2.84 -67.93 -0.19 2.90 16 3 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.22 2.52 -67.93 -0.17 2.05 16 6 H 0.11 2.17 7.05 -51.93 -0.37 1.80 16 7 C -0.16 -2.20 9.48 37.16 0.35 -1.84 16 8 N -0.71 -9.60 4.45 -53.80 -0.24 -9.84 16 9 C 0.52 7.64 7.79 -10.98 -0.09 7.56 16 10 O -0.53 -10.21 15.64 5.56 0.09 -10.12 16 11 C -0.16 -1.65 6.02 -27.88 -0.17 -1.82 16 12 C 0.12 1.26 4.70 -4.04 -0.02 1.24 16 13 N -0.51 -4.82 2.65 -116.82 -0.31 -5.13 16 14 C 0.03 0.15 10.25 -16.64 -0.17 -0.02 16 15 C 0.00 0.02 11.10 -16.64 -0.18 -0.17 16 16 N -0.63 -3.82 5.38 -12.59 -0.07 -3.89 16 17 H 0.42 1.52 8.93 -40.82 -0.36 1.15 16 18 C 0.50 5.50 8.03 -11.69 -0.09 5.41 16 19 O -0.49 -7.17 17.85 -10.30 -0.18 -7.35 16 20 C 0.49 6.03 7.73 -11.69 -0.09 5.94 16 21 O -0.48 -7.64 16.67 -10.30 -0.17 -7.82 16 22 N -0.72 -16.96 4.49 -53.43 -0.24 -17.20 16 23 C -0.23 -6.21 9.93 -15.06 -0.15 -6.36 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 27 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.39 4.11 8.60 -40.82 -0.35 3.76 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.11 1.11 8.00 -51.93 -0.42 0.69 16 44 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.18 0.04 8.06 -52.49 -0.42 -0.38 16 46 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -37.38 399.78 -7.44 -44.82 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.21 Total: 10.65 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.83 Total: 9.98 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.13 Total: -63.04 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.27 Total: -25.29 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.38 -7.44 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135688074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.777 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds