Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 N 1.46501 * 109.47133 * 179.97438 * 12 11 9 14 14 C 1.37891 * 120.06621 * 269.72938 * 13 12 11 15 15 C 1.32993 * 121.65465 * 179.69907 * 14 13 12 16 16 N 1.37897 * 121.65221 * 0.57734 * 15 14 13 17 17 H 0.96999 * 120.06380 * 179.72631 * 16 15 14 18 18 C 1.35066 * 119.87505 * 359.71540 * 16 15 14 19 19 O 1.21580 * 120.76785 * 179.97438 * 18 16 15 20 20 C 1.35074 * 120.05913 * 89.99903 * 13 12 11 21 21 O 1.21582 * 120.76511 * 0.02562 * 20 13 12 22 22 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 23 23 C 1.36943 * 119.99752 * 84.72207 * 22 2 1 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 2 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 2 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 34 34 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 35 35 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 36 36 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 37 37 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 38 38 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 39 39 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 40 40 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 41 41 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 42 42 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 43 43 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 44 44 H 1.07996 * 119.16855 * 359.97438 * 14 13 12 45 45 H 1.07994 * 119.17390 * 180.31755 * 15 14 13 46 46 H 0.97001 * 120.00384 * 265.00562 * 22 2 1 47 47 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 7 7.3525 4.2747 0.9065 14 6 7.0876 5.1941 -0.0863 15 6 7.4158 6.4763 0.0442 16 7 8.0485 6.9499 1.1742 17 1 8.2810 7.8891 1.2434 18 6 8.3438 6.1036 2.1846 19 8 8.9018 6.5036 3.1880 20 6 7.9706 4.6688 2.0411 21 8 8.2168 3.8708 2.9246 22 7 2.0184 -0.6906 -1.1962 23 6 2.1437 -0.0088 -2.3771 24 1 1.8868 1.0391 -2.4256 25 6 2.6010 -0.6645 -3.5120 26 7 2.9136 -1.9417 -3.4530 27 14 2.7727 0.2657 -5.1227 28 1 2.3606 1.6785 -4.9248 29 1 4.1876 0.2216 -5.5715 30 1 1.9070 -0.3634 -6.1523 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.6547 -1.0595 3.4193 37 1 3.8001 -2.4820 2.3594 38 1 5.1714 -1.3611 2.5385 39 1 3.3285 1.4128 1.9028 40 1 4.8579 3.2952 0.7277 41 1 5.5291 2.9083 2.3303 42 1 7.6673 2.2330 1.2707 43 1 6.9953 2.6201 -0.3314 44 1 6.5972 4.8656 -0.9907 45 1 7.1847 7.1630 -0.7567 46 1 2.2490 -1.6318 -1.1527 47 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135688074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = -105.265408 kcal Electronic energy + Delta-G solvation = -29603.234359 eV Core-core repulsion = 25399.478584 eV Total energy + Delta-G solvation = -4203.755774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69418 -40.90287 -39.72987 -38.80477 -38.30850 -36.26928 -35.94876 -33.98614 -33.08878 -31.67687 -30.49069 -30.31962 -27.62125 -27.35647 -25.61835 -24.52945 -24.26315 -22.34016 -21.43190 -21.13773 -20.05766 -19.62612 -19.24290 -18.65931 -17.96495 -17.50928 -17.10467 -16.94571 -16.65507 -16.39253 -15.96511 -15.60453 -15.48236 -15.38349 -15.01750 -14.69491 -14.51317 -14.37244 -14.18344 -13.92194 -13.85565 -13.56816 -13.31455 -13.16848 -13.07682 -12.89557 -12.78014 -12.71740 -12.62388 -12.26129 -12.18650 -12.07827 -11.79539 -11.58619 -11.50548 -11.38092 -11.07556 -10.88692 -10.79545 -9.94274 -8.90131 -8.68305 -7.86021 -5.12012 0.03322 0.74643 1.18327 1.48742 1.50106 1.59349 1.73610 1.82922 2.24483 2.41918 2.62157 3.09490 3.48999 3.68615 3.82235 3.84058 3.93098 4.06033 4.16336 4.21963 4.29880 4.43055 4.44859 4.54862 4.59353 4.71945 4.77964 4.81145 4.84606 4.86096 4.98147 5.06225 5.06742 5.13398 5.25310 5.37705 5.46079 5.50819 5.57896 5.66244 5.69350 5.71037 6.13963 6.28489 6.36295 6.66757 6.79286 7.39596 7.41967 8.22004 8.41996 9.38167 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.002959 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.269481 B = 9460.188827 C =10974.661118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.050 0.950 7 C -0.153 4.153 8 N -0.704 5.704 9 C 0.512 3.488 10 O -0.587 6.587 11 C -0.141 4.141 12 C 0.120 3.880 13 N -0.499 5.499 14 C -0.002 4.002 15 C 0.031 3.969 16 N -0.599 5.599 17 H 0.435 0.565 18 C 0.493 3.507 19 O -0.538 6.538 20 C 0.477 3.523 21 O -0.534 6.534 22 N -0.733 5.733 23 C -0.221 4.221 24 H 0.076 0.924 25 C -0.083 4.083 26 N -0.973 5.973 27 Si 0.964 3.036 28 H -0.259 1.259 29 H -0.300 1.300 30 H -0.300 1.300 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.206 0.794 45 H 0.230 0.770 46 H 0.368 0.632 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 19.614 9.096 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.068 0.932 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.068 0.932 7 C -0.211 4.211 8 N -0.356 5.356 9 C 0.299 3.701 10 O -0.467 6.467 11 C -0.181 4.181 12 C -0.003 4.003 13 N -0.223 5.223 14 C -0.119 4.119 15 C -0.088 4.088 16 N -0.246 5.246 17 H 0.276 0.724 18 C 0.277 3.723 19 O -0.413 6.413 20 C 0.262 3.738 21 O -0.409 6.409 22 N -0.373 5.373 23 C -0.353 4.353 24 H 0.094 0.906 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.795 3.205 28 H -0.183 1.183 29 H -0.228 1.228 30 H -0.228 1.228 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.250 0.750 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.222 0.778 45 H 0.246 0.754 46 H 0.199 0.801 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.173 18.794 9.760 21.414 hybrid contribution 0.216 -0.058 -0.918 0.945 sum 3.389 18.736 8.842 20.993 Atomic orbital electron populations 1.22324 0.97986 1.00683 1.00749 1.20504 0.92400 0.95488 0.85838 0.93202 1.22071 0.92804 1.02097 0.98711 1.20786 0.95530 0.81289 0.98124 0.93203 1.22095 1.00267 1.00341 0.98444 1.45851 1.16426 1.11393 1.61937 1.20842 0.81799 0.90607 0.76861 1.90733 1.52471 1.58288 1.45197 1.21872 0.98183 0.93052 1.05027 1.21487 0.95497 0.79125 1.04144 1.45697 1.50608 1.10721 1.15258 1.21916 1.06501 0.88108 0.95414 1.21909 1.00024 0.95592 0.91320 1.43546 1.52465 1.13484 1.15124 0.72401 1.20234 0.81022 0.86814 0.84264 1.90894 1.42445 1.77269 1.30654 1.20656 0.80441 0.89522 0.83141 1.90868 1.54438 1.54188 1.41390 1.42653 1.78152 1.10157 1.06309 1.19581 1.33695 0.93944 0.88088 0.90638 1.25491 1.03745 0.96804 1.01372 1.69830 1.53429 1.10322 1.28866 0.85189 0.76382 0.78614 0.80364 1.18289 1.22802 1.22776 0.94299 0.90627 0.94945 0.87756 0.91008 0.90249 0.91410 0.94585 0.75020 0.85072 0.87817 0.90842 0.86995 0.77772 0.75419 0.80060 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.49 71.98 0.68 -4.15 16 2 C 0.17 5.61 2.84 44.99 0.13 5.74 16 3 H 0.05 1.65 7.56 -2.39 -0.02 1.63 16 4 C -0.12 -3.17 4.29 30.60 0.13 -3.04 16 5 C 0.15 4.49 2.52 44.99 0.11 4.61 16 6 H 0.05 2.13 7.05 -2.39 -0.02 2.11 16 7 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 8 N -0.70 -17.95 4.45 -442.53 -1.97 -19.92 16 9 C 0.51 14.99 7.79 87.66 0.68 15.67 16 10 O -0.59 -23.55 15.64 -3.01 -0.05 -23.60 16 11 C -0.14 -2.77 6.02 29.85 0.18 -2.59 16 12 C 0.12 2.57 4.70 86.38 0.41 2.98 16 13 N -0.50 -8.75 2.65 -641.59 -1.70 -10.46 16 14 C 0.00 -0.01 10.25 82.57 0.85 0.83 16 15 C 0.03 0.10 11.10 82.57 0.92 1.02 16 16 N -0.60 -5.49 5.38 -311.86 -1.68 -7.16 16 17 H 0.43 1.62 8.93 -92.71 -0.83 0.80 16 18 C 0.49 10.67 8.03 87.07 0.70 11.37 16 19 O -0.54 -16.28 17.85 10.95 0.20 -16.08 16 20 C 0.48 11.89 7.73 87.07 0.67 12.56 16 21 O -0.53 -18.34 16.67 10.94 0.18 -18.16 16 22 N -0.73 -34.56 4.49 -322.94 -1.45 -36.01 16 23 C -0.22 -11.67 9.93 84.03 0.83 -10.83 16 24 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 25 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 26 N -0.97 -59.82 13.06 21.65 0.28 -59.53 16 27 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 28 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.41 7.31 8.60 -92.71 -0.80 6.51 16 40 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 2.06 7.42 -2.39 -0.02 2.04 16 43 H 0.11 2.28 8.00 -2.39 -0.02 2.26 16 44 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 45 H 0.23 -1.57 8.06 -2.91 -0.02 -1.59 16 46 H 0.37 19.39 7.80 -92.71 -0.72 18.67 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -89.87 399.78 1.95 -87.92 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -1.33 Total: 29.18 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 7.44 Total: 26.59 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -6.52 Total: -133.09 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: 0.33 Total: -57.84 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -89.87 1.95 -87.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135688074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.345 kcal (2) G-P(sol) polarization free energy of solvation -89.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds