Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.53004 * 109.46927 * 240.00900 * 2 1 3 5 5 C 1.53004 * 109.47006 * 174.99853 * 4 2 1 6 6 H 1.08998 * 109.47272 * 305.00087 * 5 4 2 7 7 C 1.53000 * 109.47174 * 185.00006 * 5 4 2 8 8 N 1.46497 * 109.46943 * 64.99985 * 5 4 2 9 9 C 1.36941 * 119.99949 * 205.00059 * 8 5 4 10 10 H 1.07997 * 119.99929 * 359.97438 * 9 8 5 11 11 C 1.38806 * 120.00054 * 180.02562 * 9 8 5 12 12 N 1.31625 * 120.00352 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00251 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46853 * 59.99932 * 13 11 9 15 15 H 1.48500 * 109.47342 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47331 * 300.00217 * 13 11 9 17 17 N 1.46495 * 109.47222 * 120.00784 * 2 1 3 18 18 C 1.34774 * 120.00168 * 274.99725 * 17 2 1 19 19 O 1.21280 * 119.99835 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99961 * 179.97438 * 18 17 2 21 21 C 1.53008 * 109.46844 * 180.02562 * 20 18 17 22 22 N 1.46495 * 109.47050 * 180.02562 * 21 20 18 23 23 C 1.37897 * 120.06552 * 270.27316 * 22 21 20 24 24 C 1.32996 * 121.65676 * 180.29418 * 23 22 21 25 25 N 1.37895 * 121.65056 * 359.72042 * 24 23 22 26 26 H 0.97004 * 120.06358 * 179.97438 * 25 24 23 27 27 C 1.35066 * 119.87500 * 359.97438 * 25 24 23 28 28 O 1.21584 * 120.76287 * 179.97438 * 27 25 24 29 29 C 1.35069 * 120.06450 * 89.99942 * 22 21 20 30 30 O 1.21583 * 120.76254 * 0.02562 * 29 22 21 31 31 H 1.08995 * 109.47356 * 299.99182 * 1 2 3 32 32 H 1.08998 * 109.47160 * 59.99134 * 1 2 3 33 33 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47197 * 294.99465 * 4 2 1 35 35 H 1.08999 * 109.47181 * 54.99855 * 4 2 1 36 36 H 1.09011 * 109.46965 * 300.00257 * 7 5 4 37 37 H 1.08994 * 109.47471 * 59.99691 * 7 5 4 38 38 H 1.08999 * 109.47382 * 180.02562 * 7 5 4 39 39 H 0.96998 * 120.00462 * 25.00408 * 8 5 4 40 40 H 0.97001 * 120.00356 * 180.02562 * 12 11 9 41 41 H 0.97002 * 120.00155 * 95.00486 * 17 2 1 42 42 H 1.08995 * 109.47208 * 60.00603 * 20 18 17 43 43 H 1.08999 * 109.47444 * 300.00119 * 20 18 17 44 44 H 1.08995 * 109.46858 * 60.00226 * 21 20 18 45 45 H 1.08999 * 109.47065 * 300.00188 * 21 20 18 46 46 H 1.08001 * 119.17467 * 0.02562 * 23 22 21 47 47 H 1.07994 * 119.17583 * 179.73887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4360 -1.2678 7 6 4.0645 -1.2246 -2.6243 8 7 4.1536 -1.3341 -0.1827 9 6 5.3943 -0.9856 0.2804 10 1 5.9389 -0.1794 -0.1885 11 6 5.9525 -1.6691 1.3518 12 7 5.2891 -2.6520 1.9231 13 14 7.6452 -1.1941 1.9831 14 1 7.6271 0.2217 2.4310 15 1 8.0111 -2.0695 3.1255 16 1 8.6428 -1.3564 0.8951 17 7 2.0183 -0.6907 1.1960 18 6 2.1471 -0.0186 2.3571 19 8 1.8583 1.1580 2.4118 20 6 2.6489 -0.7293 3.5875 21 6 2.7000 0.2536 4.7590 22 7 3.1884 -0.4371 5.9550 23 6 2.2983 -1.0563 6.8071 24 6 2.7063 -1.6873 7.9044 25 7 4.0410 -1.7597 8.2435 26 1 4.3130 -2.2256 9.0497 27 6 4.9688 -1.1805 7.4511 28 8 6.1499 -1.2340 7.7349 29 6 4.5118 -0.4735 6.2224 30 8 5.3112 0.0631 5.4799 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7517 -1.7714 -1.2059 35 1 1.6053 -0.2614 -2.1370 36 1 3.7722 -2.2738 -2.6704 37 1 3.6263 -0.6882 -3.4659 38 1 5.1508 -1.1481 -2.6701 39 1 3.6648 -2.0585 0.2382 40 1 5.6790 -3.1294 2.6720 41 1 2.2491 -1.6319 1.1523 42 1 3.6480 -1.1218 3.3983 43 1 1.9760 -1.5511 3.8323 44 1 1.7007 0.6457 4.9480 45 1 3.3726 1.0757 4.5145 46 1 1.2430 -1.0244 6.5799 47 1 1.9741 -2.1550 8.5458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135688075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -68.116883 kcal Electronic energy + Delta-G solvation = -30951.456496 eV Core-core repulsion = 26749.311603 eV Total energy + Delta-G solvation = -4202.144893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51101 -39.41010 -38.45742 -37.60891 -36.83327 -34.99408 -34.14122 -32.31609 -31.56861 -30.40955 -29.42863 -28.48178 -26.37890 -26.03275 -23.61294 -23.47225 -23.02158 -20.90892 -20.22760 -19.44488 -18.94739 -18.64384 -17.40456 -17.12407 -16.67976 -16.19697 -15.74862 -15.59537 -15.00635 -14.80248 -14.76670 -14.14785 -13.95285 -13.78113 -13.63502 -13.39601 -13.38388 -13.00256 -12.71073 -12.60935 -12.45457 -12.11367 -11.93089 -11.84373 -11.69175 -11.63645 -11.42183 -11.00829 -10.79201 -10.69740 -10.66761 -10.39255 -10.32839 -10.19183 -9.87556 -9.74937 -9.61423 -9.22909 -8.88929 -8.35459 -7.70579 -6.90566 -5.76390 -3.02124 1.33341 1.64059 2.38130 2.86643 3.29955 3.42187 3.55138 3.63470 3.69401 3.87559 4.07427 4.68813 4.74270 5.01122 5.09499 5.13705 5.23538 5.36824 5.45107 5.48459 5.56225 5.60698 5.67312 5.70935 5.88897 5.96158 6.00733 6.04338 6.09255 6.15174 6.25453 6.35007 6.42525 6.51203 6.54574 6.56853 6.61101 6.63707 6.87858 7.07239 7.17793 7.18936 7.41355 7.75787 7.94635 8.18369 8.43023 8.88551 9.56291 10.08196 10.43722 11.45289 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.004463 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.820991 B = 6272.857803 C = 8198.982966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.230 4.230 10 H 0.066 0.934 11 C -0.004 4.004 12 N -0.934 5.934 13 Si 0.897 3.103 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.694 5.694 18 C 0.537 3.463 19 O -0.569 6.569 20 C -0.163 4.163 21 C 0.122 3.878 22 N -0.517 5.517 23 C 0.030 3.970 24 C -0.003 4.003 25 N -0.628 5.628 26 H 0.415 0.585 27 C 0.499 3.501 28 O -0.486 6.486 29 C 0.490 3.510 30 O -0.458 6.458 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.377 0.623 40 H 0.253 0.747 41 H 0.405 0.595 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.170 0.830 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 -0.444 7.728 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.361 4.361 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.583 5.583 13 Si 0.728 3.272 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.218 1.218 17 N -0.346 5.346 18 C 0.323 3.677 19 O -0.450 6.450 20 C -0.203 4.203 21 C 0.001 3.999 22 N -0.243 5.243 23 C -0.090 4.090 24 C -0.124 4.124 25 N -0.276 5.276 26 H 0.253 0.747 27 C 0.282 3.718 28 O -0.356 6.356 29 C 0.273 3.727 30 O -0.326 6.326 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.212 0.788 40 H 0.063 0.937 41 H 0.243 0.757 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.188 0.812 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.041 0.893 7.295 15.848 hybrid contribution 1.014 -0.941 0.768 1.583 sum -13.027 -0.048 8.063 15.320 Atomic orbital electron populations 1.22196 0.96367 1.01508 1.01860 1.20797 0.92366 0.97756 0.84678 0.89957 1.22205 0.97857 1.00541 0.96587 1.20274 0.89656 0.95897 0.88225 0.93475 1.22427 1.01563 1.00294 0.98098 1.42425 1.18708 1.39961 1.34824 1.19112 0.93276 1.13139 1.10608 0.91600 1.24510 0.98339 0.98396 0.98687 1.69563 1.38129 1.24593 1.26029 0.86411 0.84498 0.78415 0.77843 1.20950 1.21691 1.21790 1.45941 1.65584 1.14465 1.08617 1.20050 0.76182 0.86716 0.84712 1.90620 1.52259 1.16173 1.85903 1.22019 1.06648 0.98945 0.92699 1.21576 1.01466 0.95027 0.81820 1.45662 1.05758 1.49174 1.23698 1.21099 0.96425 0.99921 0.91603 1.20905 0.85044 1.06678 0.99784 1.43504 1.06061 1.51816 1.26187 0.74682 1.20465 0.86361 0.80503 0.84476 1.90914 1.15801 1.57611 1.71316 1.20275 0.82585 0.82912 0.86943 1.90987 1.52652 1.41817 1.47095 0.92470 0.92219 0.92887 0.91801 0.90913 0.93661 0.94644 0.92879 0.78814 0.93748 0.75689 0.85389 0.89420 0.88749 0.88091 0.81249 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 37.16 0.35 -1.67 16 2 C 0.15 2.31 2.57 -67.93 -0.17 2.13 16 3 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.13 -1.96 4.43 -26.73 -0.12 -2.08 16 5 C 0.17 3.15 2.89 -67.93 -0.20 2.95 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 8 N -0.72 -16.16 3.84 -53.43 -0.21 -16.36 16 9 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 10 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 11 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 12 N -0.93 -25.79 12.78 55.49 0.71 -25.08 16 13 Si 0.90 24.02 29.55 -169.99 -5.02 19.00 16 14 H -0.28 -7.87 7.11 56.52 0.40 -7.47 16 15 H -0.29 -8.08 7.11 56.52 0.40 -7.68 16 16 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 17 N -0.69 -11.84 3.80 -53.81 -0.20 -12.04 16 18 C 0.54 9.84 7.79 -10.99 -0.09 9.76 16 19 O -0.57 -11.60 15.64 5.56 0.09 -11.51 16 20 C -0.16 -2.72 6.02 -27.88 -0.17 -2.89 16 21 C 0.12 1.84 4.70 -4.04 -0.02 1.82 16 22 N -0.52 -7.14 2.65 -116.82 -0.31 -7.45 16 23 C 0.03 0.26 10.25 -16.64 -0.17 0.09 16 24 C 0.00 -0.02 11.10 -16.64 -0.18 -0.21 16 25 N -0.63 -6.24 5.38 -12.60 -0.07 -6.31 16 26 H 0.42 2.96 8.93 -40.82 -0.36 2.59 16 27 C 0.50 8.03 8.03 -11.69 -0.09 7.93 16 28 O -0.49 -9.69 17.85 -10.30 -0.18 -9.87 16 29 C 0.49 8.86 7.73 -11.69 -0.09 8.77 16 30 O -0.46 -10.69 16.67 -10.30 -0.17 -10.86 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.38 8.62 5.70 -40.82 -0.23 8.39 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.41 7.08 6.51 -40.82 -0.27 6.82 16 42 H 0.13 2.76 7.87 -51.93 -0.41 2.35 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.13 8.00 -51.93 -0.42 0.72 16 45 H 0.10 1.84 7.42 -51.93 -0.39 1.45 16 46 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -35.89 395.04 -7.34 -43.23 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.08 Total: 13.67 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -0.84 Total: 17.64 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.08 Total: -67.25 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.27 Total: -32.25 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.02 Total: 19.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.89 -7.34 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135688075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.885 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds