Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.53004 * 109.46927 * 240.00900 * 2 1 3 5 5 C 1.53004 * 109.47006 * 174.99853 * 4 2 1 6 6 H 1.08998 * 109.47272 * 305.00087 * 5 4 2 7 7 C 1.53000 * 109.47174 * 185.00006 * 5 4 2 8 8 N 1.46497 * 109.46943 * 64.99985 * 5 4 2 9 9 C 1.36941 * 119.99949 * 205.00059 * 8 5 4 10 10 H 1.07997 * 119.99929 * 359.97438 * 9 8 5 11 11 C 1.38806 * 120.00054 * 180.02562 * 9 8 5 12 12 N 1.31625 * 120.00352 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00251 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46853 * 59.99932 * 13 11 9 15 15 H 1.48500 * 109.47342 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47331 * 300.00217 * 13 11 9 17 17 N 1.46495 * 109.47222 * 120.00784 * 2 1 3 18 18 C 1.34774 * 120.00168 * 274.99725 * 17 2 1 19 19 O 1.21280 * 119.99835 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99961 * 179.97438 * 18 17 2 21 21 C 1.53008 * 109.46844 * 180.02562 * 20 18 17 22 22 N 1.46495 * 109.47050 * 180.02562 * 21 20 18 23 23 C 1.37897 * 120.06552 * 270.27316 * 22 21 20 24 24 C 1.32996 * 121.65676 * 180.29418 * 23 22 21 25 25 N 1.37895 * 121.65056 * 359.72042 * 24 23 22 26 26 H 0.97004 * 120.06358 * 179.97438 * 25 24 23 27 27 C 1.35066 * 119.87500 * 359.97438 * 25 24 23 28 28 O 1.21584 * 120.76287 * 179.97438 * 27 25 24 29 29 C 1.35069 * 120.06450 * 89.99942 * 22 21 20 30 30 O 1.21583 * 120.76254 * 0.02562 * 29 22 21 31 31 H 1.08995 * 109.47356 * 299.99182 * 1 2 3 32 32 H 1.08998 * 109.47160 * 59.99134 * 1 2 3 33 33 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47197 * 294.99465 * 4 2 1 35 35 H 1.08999 * 109.47181 * 54.99855 * 4 2 1 36 36 H 1.09011 * 109.46965 * 300.00257 * 7 5 4 37 37 H 1.08994 * 109.47471 * 59.99691 * 7 5 4 38 38 H 1.08999 * 109.47382 * 180.02562 * 7 5 4 39 39 H 0.96998 * 120.00462 * 25.00408 * 8 5 4 40 40 H 0.97001 * 120.00356 * 180.02562 * 12 11 9 41 41 H 0.97002 * 120.00155 * 95.00486 * 17 2 1 42 42 H 1.08995 * 109.47208 * 60.00603 * 20 18 17 43 43 H 1.08999 * 109.47444 * 300.00119 * 20 18 17 44 44 H 1.08995 * 109.46858 * 60.00226 * 21 20 18 45 45 H 1.08999 * 109.47065 * 300.00188 * 21 20 18 46 46 H 1.08001 * 119.17467 * 0.02562 * 23 22 21 47 47 H 1.07994 * 119.17583 * 179.73887 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4360 -1.2678 7 6 4.0645 -1.2246 -2.6243 8 7 4.1536 -1.3341 -0.1827 9 6 5.3943 -0.9856 0.2804 10 1 5.9389 -0.1794 -0.1885 11 6 5.9525 -1.6691 1.3518 12 7 5.2891 -2.6520 1.9231 13 14 7.6452 -1.1941 1.9831 14 1 7.6271 0.2217 2.4310 15 1 8.0111 -2.0695 3.1255 16 1 8.6428 -1.3564 0.8951 17 7 2.0183 -0.6907 1.1960 18 6 2.1471 -0.0186 2.3571 19 8 1.8583 1.1580 2.4118 20 6 2.6489 -0.7293 3.5875 21 6 2.7000 0.2536 4.7590 22 7 3.1884 -0.4371 5.9550 23 6 2.2983 -1.0563 6.8071 24 6 2.7063 -1.6873 7.9044 25 7 4.0410 -1.7597 8.2435 26 1 4.3130 -2.2256 9.0497 27 6 4.9688 -1.1805 7.4511 28 8 6.1499 -1.2340 7.7349 29 6 4.5118 -0.4735 6.2224 30 8 5.3112 0.0631 5.4799 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7517 -1.7714 -1.2059 35 1 1.6053 -0.2614 -2.1370 36 1 3.7722 -2.2738 -2.6704 37 1 3.6263 -0.6882 -3.4659 38 1 5.1508 -1.1481 -2.6701 39 1 3.6648 -2.0585 0.2382 40 1 5.6790 -3.1294 2.6720 41 1 2.2491 -1.6319 1.1523 42 1 3.6480 -1.1218 3.3983 43 1 1.9760 -1.5511 3.8323 44 1 1.7007 0.6457 4.9480 45 1 3.3726 1.0757 4.5145 46 1 1.2430 -1.0244 6.5799 47 1 1.9741 -2.1550 8.5458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135688075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = -95.304863 kcal Electronic energy + Delta-G solvation = -30952.635455 eV Core-core repulsion = 26749.311603 eV Total energy + Delta-G solvation = -4203.323853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.67670 -40.81139 -39.73574 -38.80850 -38.32240 -36.24450 -35.73831 -34.07000 -32.93903 -31.73856 -30.50242 -30.14879 -27.60245 -27.30820 -25.60471 -24.51352 -24.22436 -22.22455 -21.66639 -20.91908 -20.06661 -19.63468 -19.15668 -18.58251 -17.92364 -17.48527 -17.10220 -16.90738 -16.66175 -16.36282 -15.95397 -15.67044 -15.50596 -15.31602 -14.87866 -14.74294 -14.48420 -14.28795 -14.09753 -13.85216 -13.75801 -13.55276 -13.32239 -13.19330 -13.02184 -12.92398 -12.78224 -12.74124 -12.65233 -12.30347 -12.25845 -12.13070 -11.69572 -11.63730 -11.55906 -11.39767 -11.06656 -10.91105 -10.68037 -9.78053 -8.84980 -8.65280 -7.95281 -5.12697 0.03836 0.77409 1.21081 1.31627 1.39467 1.46805 1.81768 1.87769 2.28942 2.51680 2.58608 3.14182 3.42175 3.78566 3.85501 3.95902 3.98089 4.08345 4.20283 4.26822 4.30786 4.42456 4.44019 4.60069 4.73140 4.75617 4.83628 4.86444 4.89954 4.95862 5.00409 5.11351 5.14647 5.17967 5.19947 5.42529 5.43638 5.50669 5.56095 5.64186 5.70830 5.84486 6.15933 6.29155 6.33805 6.76651 6.81701 7.40992 7.45985 8.14646 8.41458 9.24712 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.004463 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.820991 B = 6272.857803 C = 8198.982966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.144 3.856 3 H 0.052 0.948 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.026 0.974 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.218 4.218 10 H 0.054 0.946 11 C -0.038 4.038 12 N -0.933 5.933 13 Si 0.923 3.077 14 H -0.307 1.307 15 H -0.308 1.308 16 H -0.278 1.278 17 N -0.691 5.691 18 C 0.530 3.470 19 O -0.594 6.594 20 C -0.152 4.152 21 C 0.129 3.871 22 N -0.499 5.499 23 C 0.003 3.997 24 C 0.022 3.978 25 N -0.596 5.596 26 H 0.434 0.566 27 C 0.489 3.511 28 O -0.544 6.544 29 C 0.466 3.534 30 O -0.541 6.541 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.377 0.623 40 H 0.243 0.757 41 H 0.404 0.596 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.056 0.944 46 H 0.221 0.779 47 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 -2.067 7.787 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.158 4.158 5 C 0.052 3.948 6 H 0.044 0.956 7 C -0.214 4.214 8 N -0.360 5.360 9 C -0.351 4.351 10 H 0.072 0.928 11 C -0.233 4.233 12 N -0.584 5.584 13 Si 0.757 3.243 14 H -0.235 1.235 15 H -0.235 1.235 16 H -0.204 1.204 17 N -0.342 5.342 18 C 0.317 3.683 19 O -0.477 6.477 20 C -0.193 4.193 21 C 0.007 3.993 22 N -0.223 5.223 23 C -0.115 4.115 24 C -0.097 4.097 25 N -0.243 5.243 26 H 0.276 0.724 27 C 0.273 3.727 28 O -0.420 6.420 29 C 0.252 3.748 30 O -0.415 6.415 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.212 0.788 40 H 0.052 0.948 41 H 0.242 0.758 42 H 0.097 0.903 43 H 0.143 0.857 44 H 0.153 0.847 45 H 0.075 0.925 46 H 0.237 0.763 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -18.862 -0.779 7.356 20.261 hybrid contribution 2.297 -0.416 0.768 2.458 sum -16.565 -1.195 8.125 18.489 Atomic orbital electron populations 1.22072 0.93368 1.02802 1.02411 1.20944 0.94632 0.96058 0.84398 0.92934 1.22121 0.94379 1.01717 0.97539 1.20519 0.92518 0.94250 0.87467 0.95555 1.22278 0.99964 1.00925 0.98244 1.42466 1.17391 1.40174 1.35948 1.19167 0.94562 1.11699 1.09636 0.92779 1.24712 0.99199 0.99549 0.99811 1.69577 1.37833 1.24981 1.25989 0.86002 0.84751 0.76358 0.77194 1.23529 1.23544 1.20444 1.46011 1.64973 1.14320 1.08850 1.20328 0.75982 0.86493 0.85534 1.90600 1.53603 1.17123 1.86368 1.21895 1.04446 1.00112 0.92818 1.21483 1.02156 0.93629 0.82050 1.45724 1.05107 1.47863 1.23596 1.22102 0.97777 1.00184 0.91400 1.22057 0.83981 1.04209 0.99442 1.43491 1.06565 1.48969 1.25256 0.72432 1.20278 0.86515 0.81263 0.84630 1.90872 1.18076 1.60396 1.72616 1.20837 0.83571 0.83028 0.87380 1.90929 1.54796 1.45887 1.49888 0.93692 0.89945 0.91129 0.90326 0.87392 0.93169 0.91153 0.95519 0.78841 0.94796 0.75826 0.90279 0.85688 0.84663 0.92505 0.76265 0.74533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.48 71.98 0.68 -2.56 16 2 C 0.14 4.22 2.57 44.99 0.12 4.33 16 3 H 0.05 1.87 7.58 -2.39 -0.02 1.85 16 4 C -0.12 -3.14 4.43 30.60 0.14 -3.00 16 5 C 0.16 5.79 2.89 44.99 0.13 5.92 16 6 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 7 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 8 N -0.72 -32.39 3.84 -322.95 -1.24 -33.63 16 9 C -0.22 -11.93 9.93 84.03 0.83 -11.10 16 10 H 0.05 3.06 7.83 -2.91 -0.02 3.04 16 11 C -0.04 -2.21 5.50 84.86 0.47 -1.74 16 12 N -0.93 -53.05 12.78 21.65 0.28 -52.77 16 13 Si 0.92 51.78 29.55 68.60 2.03 53.81 16 14 H -0.31 -18.29 7.11 99.48 0.71 -17.58 16 15 H -0.31 -18.09 7.11 99.48 0.71 -17.38 16 16 H -0.28 -14.79 7.11 99.48 0.71 -14.08 16 17 N -0.69 -23.06 3.80 -442.55 -1.68 -24.74 16 18 C 0.53 19.52 7.79 87.66 0.68 20.20 16 19 O -0.59 -24.58 15.64 -3.03 -0.05 -24.63 16 20 C -0.15 -5.13 6.02 29.85 0.18 -4.95 16 21 C 0.13 3.90 4.70 86.38 0.41 4.31 16 22 N -0.50 -13.61 2.65 -641.59 -1.70 -15.31 16 23 C 0.00 0.03 10.25 82.57 0.85 0.88 16 24 C 0.02 0.19 11.10 82.57 0.92 1.11 16 25 N -0.60 -10.37 5.38 -311.86 -1.68 -12.05 16 26 H 0.43 4.83 8.93 -92.71 -0.83 4.00 16 27 C 0.49 16.33 8.03 87.07 0.70 17.03 16 28 O -0.54 -23.30 17.85 10.93 0.20 -23.10 16 29 C 0.47 18.02 7.73 87.07 0.67 18.69 16 30 O -0.54 -28.13 16.67 10.94 0.18 -27.95 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.38 17.09 5.70 -92.71 -0.53 16.56 16 40 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.40 13.73 6.51 -92.71 -0.60 13.13 16 42 H 0.08 3.59 7.87 -2.39 -0.02 3.57 16 43 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.14 2.96 8.00 -2.39 -0.02 2.94 16 45 H 0.06 2.25 7.42 -2.39 -0.02 2.23 16 46 H 0.22 0.68 8.06 -2.91 -0.02 0.66 16 47 H 0.24 -0.89 8.06 -2.91 -0.02 -0.91 16 Total: -1.00 -90.63 395.04 2.83 -87.80 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.95 Total: 27.79 kcal Atomic # 6 Polarization: 37.33 SS G_CDS: 7.45 Total: 44.79 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -6.03 Total: -138.50 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: 0.33 Total: -75.68 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.03 Total: 53.81 kcal Total: -90.63 2.83 -87.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135688075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.508 kcal (2) G-P(sol) polarization free energy of solvation -90.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds