Wall clock time and date at job start Tue Mar 31 2020 22:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35283 * 116.99997 * 2 1 4 4 N 1.32815 * 120.58973 * 0.28743 * 3 2 1 5 5 C 1.31793 * 121.04615 * 180.28310 * 4 3 2 6 6 N 1.31792 * 122.30089 * 359.70975 * 5 4 3 7 7 C 1.32813 * 121.04587 * 359.97438 * 6 5 4 8 8 O 1.35280 * 120.58513 * 179.97438 * 7 6 5 9 9 C 1.42903 * 117.00309 * 0.03005 * 8 7 6 10 10 C 1.40641 * 120.58734 * 179.97438 * 3 2 1 11 11 C 1.47213 * 121.02279 * 0.02562 * 10 3 2 12 12 O 1.21634 * 119.99501 * 269.71805 * 11 10 3 13 13 N 1.34775 * 120.00635 * 89.71523 * 11 10 3 14 14 C 1.46495 * 120.00457 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46927 * 34.99720 * 14 13 11 16 16 C 1.53007 * 109.46926 * 275.00188 * 14 13 11 17 17 C 1.52997 * 109.47416 * 155.00022 * 14 13 11 18 18 C 1.52999 * 109.47080 * 295.00201 * 17 14 13 19 19 H 1.09004 * 109.47434 * 54.99895 * 18 17 14 20 20 C 1.52997 * 109.47114 * 174.99701 * 18 17 14 21 21 N 1.46498 * 109.46963 * 294.99494 * 18 17 14 22 22 C 1.36943 * 119.99752 * 154.72381 * 21 18 17 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 18 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 18 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47079 * 299.99731 * 1 2 3 32 32 H 1.08998 * 109.47547 * 59.99436 * 1 2 3 33 33 H 1.08004 * 118.84982 * 179.67803 * 5 4 3 34 34 H 1.09000 * 109.46930 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.46842 * 299.99609 * 9 8 7 36 36 H 1.09001 * 109.47092 * 59.99459 * 9 8 7 37 37 H 0.97009 * 119.99372 * 0.02562 * 13 11 10 38 38 H 1.09002 * 109.46936 * 299.99527 * 16 14 13 39 39 H 1.09000 * 109.46920 * 60.00186 * 16 14 13 40 40 H 1.08997 * 109.46639 * 180.02562 * 16 14 13 41 41 H 1.08997 * 109.47302 * 174.99664 * 17 14 13 42 42 H 1.09007 * 109.46917 * 55.00199 * 17 14 13 43 43 H 1.08997 * 109.47293 * 179.97438 * 20 18 17 44 44 H 1.09003 * 109.47189 * 300.00067 * 20 18 17 45 45 H 1.09009 * 109.47238 * 59.99946 * 20 18 17 46 46 H 0.97001 * 120.00384 * 335.00737 * 21 18 17 47 47 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3313 2.3266 0.0057 5 6 1.9202 3.5057 0.0002 6 7 3.2314 3.6379 -0.0055 7 6 4.0271 2.5745 -0.0055 8 8 5.3719 2.7210 -0.0119 9 6 5.8790 4.0570 -0.0180 10 6 3.4468 1.2934 0.0005 11 6 4.2829 0.0818 0.0006 12 8 4.6322 -0.4160 1.0540 13 7 4.6614 -0.4760 -1.1665 14 6 5.4930 -1.6820 -1.1665 15 1 5.2170 -2.3136 -0.3221 16 6 6.9660 -1.2857 -1.0469 17 6 5.2761 -2.4512 -2.4711 18 6 3.8327 -2.9548 -2.5323 19 1 3.1492 -2.1155 -2.4038 20 6 3.5800 -3.6152 -3.8891 21 7 3.6112 -3.9329 -1.4644 22 6 2.3486 -4.1387 -0.9755 23 1 1.5156 -3.5832 -1.3804 24 6 2.1395 -5.0613 0.0403 25 7 3.1548 -5.7379 0.5340 26 14 0.4172 -5.3426 0.7066 27 1 -0.5410 -4.4648 -0.0120 28 1 0.0340 -6.7630 0.5044 29 1 0.3894 -5.0240 2.1568 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.3068 4.3946 -0.0001 34 1 6.9687 4.0320 -0.0223 35 1 5.5236 4.5765 -0.9079 36 1 5.5314 4.5816 0.8721 37 1 4.3831 -0.0787 -2.0067 38 1 7.2421 -0.6541 -1.8913 39 1 7.1205 -0.7378 -0.1173 40 1 7.5848 -2.1831 -1.0473 41 1 5.9591 -3.2998 -2.5105 42 1 5.4670 -1.7917 -3.3178 43 1 2.5519 -3.9744 -3.9325 44 1 3.7449 -2.8874 -4.6837 45 1 4.2635 -4.4546 -4.0176 46 1 4.3593 -4.4318 -1.1007 47 1 3.0087 -6.3829 1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146808960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:53 Heat of formation + Delta-G solvation = -48.207326 kcal Electronic energy + Delta-G solvation = -31140.401019 eV Core-core repulsion = 26939.119469 eV Total energy + Delta-G solvation = -4201.281550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60640 -39.36992 -39.16621 -37.97590 -36.69213 -34.32581 -32.88381 -32.46864 -31.87852 -30.22678 -28.51578 -28.17203 -27.02355 -26.25298 -25.35929 -23.53947 -23.33414 -21.64217 -20.35657 -19.62297 -19.38429 -18.70972 -17.68643 -16.99964 -16.76245 -16.70266 -15.88344 -15.74965 -15.70122 -14.72937 -14.44934 -14.33923 -14.07253 -13.98293 -13.88832 -13.79245 -13.41095 -12.85358 -12.61234 -12.43211 -12.06879 -12.01921 -11.98859 -11.92948 -11.66418 -11.59090 -11.49074 -11.38731 -10.96885 -10.78822 -10.55033 -10.34613 -10.14192 -9.85240 -9.82578 -9.81245 -9.56990 -9.53677 -9.04356 -8.80369 -8.59107 -6.83323 -5.64940 -2.91958 0.59354 0.98989 2.30108 2.84453 3.20172 3.38947 3.48773 3.50873 3.55786 3.56223 3.82286 3.92430 4.67403 4.68836 4.92361 5.00858 5.06681 5.09947 5.24926 5.27646 5.30123 5.31695 5.51020 5.55293 5.57339 5.70252 5.71721 5.79165 5.97522 6.03979 6.08833 6.21814 6.36083 6.44766 6.50401 6.53860 6.64958 6.76130 6.80911 6.89785 7.00000 7.02096 7.14428 7.76190 7.80284 7.87573 8.53379 8.61429 9.64642 10.22457 10.56910 11.58277 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.004530 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.394048 B = 6178.960699 C = 7646.401448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.270 6.270 3 C 0.422 3.578 4 N -0.593 5.593 5 C 0.381 3.619 6 N -0.597 5.597 7 C 0.416 3.584 8 O -0.287 6.287 9 C 0.038 3.962 10 C -0.273 4.273 11 C 0.592 3.408 12 O -0.519 6.519 13 N -0.703 5.703 14 C 0.144 3.856 15 H 0.106 0.894 16 C -0.160 4.160 17 C -0.130 4.130 18 C 0.172 3.828 19 H 0.046 0.954 20 C -0.164 4.164 21 N -0.719 5.719 22 C -0.226 4.226 23 H 0.067 0.933 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.900 3.100 27 H -0.282 1.282 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.207 0.793 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.383 0.617 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 21.094 -6.118 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.171 6.171 3 C 0.236 3.764 4 N -0.328 5.328 5 C 0.093 3.907 6 N -0.332 5.332 7 C 0.231 3.769 8 O -0.190 6.190 9 C -0.057 4.057 10 C -0.283 4.283 11 C 0.374 3.626 12 O -0.393 6.393 13 N -0.353 5.353 14 C 0.041 3.959 15 H 0.124 0.876 16 C -0.218 4.218 17 C -0.169 4.169 18 C 0.061 3.939 19 H 0.064 0.936 20 C -0.225 4.225 21 N -0.361 5.361 22 C -0.357 4.357 23 H 0.085 0.915 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.223 0.777 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.225 0.775 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.216 0.784 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.080 20.929 -5.295 21.688 hybrid contribution -0.735 -0.497 0.123 0.896 sum 1.345 20.431 -5.172 21.119 Atomic orbital electron populations 1.23107 0.75645 1.04489 1.02457 1.86436 1.24003 1.22247 1.84440 1.19800 0.87250 0.85564 0.83754 1.68237 1.40737 0.98681 1.25145 1.24478 0.86874 0.94174 0.85191 1.68171 1.07267 1.32104 1.25662 1.19600 0.84772 0.87549 0.84949 1.86259 1.15194 1.31851 1.85720 1.23033 0.99382 0.80344 1.02921 1.19583 0.92337 0.94473 1.21888 1.17086 0.78940 0.82063 0.84484 1.90830 1.55165 1.62129 1.31196 1.45853 1.53008 1.28967 1.07428 1.21059 0.88783 0.85371 1.00714 0.87556 1.22174 0.96435 1.01591 1.01611 1.22169 0.99539 0.99586 0.95620 1.20217 0.92702 0.92292 0.88645 0.93579 1.22453 1.01773 0.99993 0.98243 1.42394 1.07575 1.45492 1.40616 1.19170 0.85874 1.17117 1.13552 0.91540 1.24667 0.96873 0.99841 0.99513 1.69654 1.28879 1.29273 1.30284 0.86221 0.84486 0.77350 0.78751 1.20779 1.22121 1.21989 0.87348 0.91783 0.91718 0.77709 0.87983 0.91683 0.91699 0.77461 0.93183 0.92427 0.91765 0.90576 0.92156 0.92973 0.94829 0.93553 0.78364 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.41 101.05 1.05 1.55 16 2 O -0.27 -4.71 10.02 -17.54 -0.18 -4.88 16 3 C 0.42 6.66 7.54 -16.22 -0.12 6.54 16 4 N -0.59 -7.66 9.37 -14.36 -0.13 -7.80 16 5 C 0.38 3.95 12.26 -92.16 -1.13 2.82 16 6 N -0.60 -6.98 9.36 -14.36 -0.13 -7.12 16 7 C 0.42 5.80 7.54 -16.22 -0.12 5.68 16 8 O -0.29 -3.72 10.02 -17.53 -0.18 -3.89 16 9 C 0.04 0.31 10.41 101.05 1.05 1.37 16 10 C -0.27 -4.47 5.68 -104.44 -0.59 -5.06 16 11 C 0.59 11.26 6.48 -12.62 -0.08 11.18 16 12 O -0.52 -12.18 16.77 5.25 0.09 -12.09 16 13 N -0.70 -11.59 4.44 -54.95 -0.24 -11.83 16 14 C 0.14 2.49 2.52 -67.93 -0.17 2.32 16 15 H 0.11 2.38 7.05 -51.93 -0.37 2.01 16 16 C -0.16 -2.34 9.48 37.16 0.35 -1.98 16 17 C -0.13 -2.07 4.29 -26.73 -0.11 -2.18 16 18 C 0.17 3.33 2.84 -67.93 -0.19 3.14 16 19 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 20 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 21 N -0.72 -17.85 4.49 -53.43 -0.24 -18.09 16 22 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 26 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 30 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.06 0.77 8.12 -51.92 -0.42 0.35 16 32 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.21 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.06 0.52 8.12 -51.93 -0.42 0.09 16 37 H 0.39 5.46 8.59 -40.82 -0.35 5.11 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.38 10.21 7.80 -40.82 -0.32 9.90 16 47 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -35.77 401.86 -6.53 -42.31 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.31 Total: 11.65 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 0.04 Total: 15.88 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -0.03 Total: -72.88 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.26 Total: -20.86 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.77 -6.53 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146808960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.899 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds