Wall clock time and date at job start Tue Mar 31 2020 22:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35283 * 116.99997 * 2 1 4 4 N 1.32815 * 120.58973 * 0.28743 * 3 2 1 5 5 C 1.31793 * 121.04615 * 180.28310 * 4 3 2 6 6 N 1.31792 * 122.30089 * 359.70975 * 5 4 3 7 7 C 1.32813 * 121.04587 * 359.97438 * 6 5 4 8 8 O 1.35280 * 120.58513 * 179.97438 * 7 6 5 9 9 C 1.42903 * 117.00309 * 0.03005 * 8 7 6 10 10 C 1.40641 * 120.58734 * 179.97438 * 3 2 1 11 11 C 1.47213 * 121.02279 * 0.02562 * 10 3 2 12 12 O 1.21634 * 119.99501 * 269.71805 * 11 10 3 13 13 N 1.34775 * 120.00635 * 89.71523 * 11 10 3 14 14 C 1.46495 * 120.00457 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46927 * 34.99720 * 14 13 11 16 16 C 1.53007 * 109.46926 * 275.00188 * 14 13 11 17 17 C 1.52997 * 109.47416 * 155.00022 * 14 13 11 18 18 C 1.52999 * 109.47080 * 295.00201 * 17 14 13 19 19 H 1.09004 * 109.47434 * 54.99895 * 18 17 14 20 20 C 1.52997 * 109.47114 * 174.99701 * 18 17 14 21 21 N 1.46498 * 109.46963 * 294.99494 * 18 17 14 22 22 C 1.36943 * 119.99752 * 154.72381 * 21 18 17 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 18 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 18 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47079 * 299.99731 * 1 2 3 32 32 H 1.08998 * 109.47547 * 59.99436 * 1 2 3 33 33 H 1.08004 * 118.84982 * 179.67803 * 5 4 3 34 34 H 1.09000 * 109.46930 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.46842 * 299.99609 * 9 8 7 36 36 H 1.09001 * 109.47092 * 59.99459 * 9 8 7 37 37 H 0.97009 * 119.99372 * 0.02562 * 13 11 10 38 38 H 1.09002 * 109.46936 * 299.99527 * 16 14 13 39 39 H 1.09000 * 109.46920 * 60.00186 * 16 14 13 40 40 H 1.08997 * 109.46639 * 180.02562 * 16 14 13 41 41 H 1.08997 * 109.47302 * 174.99664 * 17 14 13 42 42 H 1.09007 * 109.46917 * 55.00199 * 17 14 13 43 43 H 1.08997 * 109.47293 * 179.97438 * 20 18 17 44 44 H 1.09003 * 109.47189 * 300.00067 * 20 18 17 45 45 H 1.09009 * 109.47238 * 59.99946 * 20 18 17 46 46 H 0.97001 * 120.00384 * 335.00737 * 21 18 17 47 47 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3313 2.3266 0.0057 5 6 1.9202 3.5057 0.0002 6 7 3.2314 3.6379 -0.0055 7 6 4.0271 2.5745 -0.0055 8 8 5.3719 2.7210 -0.0119 9 6 5.8790 4.0570 -0.0180 10 6 3.4468 1.2934 0.0005 11 6 4.2829 0.0818 0.0006 12 8 4.6322 -0.4160 1.0540 13 7 4.6614 -0.4760 -1.1665 14 6 5.4930 -1.6820 -1.1665 15 1 5.2170 -2.3136 -0.3221 16 6 6.9660 -1.2857 -1.0469 17 6 5.2761 -2.4512 -2.4711 18 6 3.8327 -2.9548 -2.5323 19 1 3.1492 -2.1155 -2.4038 20 6 3.5800 -3.6152 -3.8891 21 7 3.6112 -3.9329 -1.4644 22 6 2.3486 -4.1387 -0.9755 23 1 1.5156 -3.5832 -1.3804 24 6 2.1395 -5.0613 0.0403 25 7 3.1548 -5.7379 0.5340 26 14 0.4172 -5.3426 0.7066 27 1 -0.5410 -4.4648 -0.0120 28 1 0.0340 -6.7630 0.5044 29 1 0.3894 -5.0240 2.1568 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.3068 4.3946 -0.0001 34 1 6.9687 4.0320 -0.0223 35 1 5.5236 4.5765 -0.9079 36 1 5.5314 4.5816 0.8721 37 1 4.3831 -0.0787 -2.0067 38 1 7.2421 -0.6541 -1.8913 39 1 7.1205 -0.7378 -0.1173 40 1 7.5848 -2.1831 -1.0473 41 1 5.9591 -3.2998 -2.5105 42 1 5.4670 -1.7917 -3.3178 43 1 2.5519 -3.9744 -3.9325 44 1 3.7449 -2.8874 -4.6837 45 1 4.2635 -4.4546 -4.0176 46 1 4.3593 -4.4318 -1.1007 47 1 3.0087 -6.3829 1.2436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146808960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:52 Heat of formation + Delta-G solvation = -77.625690 kcal Electronic energy + Delta-G solvation = -31141.676695 eV Core-core repulsion = 26939.119469 eV Total energy + Delta-G solvation = -4202.557226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.65064 -40.59026 -40.41341 -39.00570 -38.28136 -36.03531 -34.06865 -33.86489 -33.40972 -31.59586 -30.37776 -29.06042 -27.93275 -27.59690 -26.43258 -25.62458 -24.34458 -22.96904 -21.82422 -21.18975 -20.38277 -19.71338 -19.35334 -18.75819 -17.83558 -17.78121 -17.19314 -16.86487 -16.63779 -16.58120 -15.75086 -15.66188 -15.58828 -15.26008 -15.18771 -14.88508 -14.86541 -14.50091 -14.19680 -13.59744 -13.38299 -13.30162 -13.16424 -12.96684 -12.89908 -12.87019 -12.81522 -12.64748 -12.49525 -12.45433 -12.22178 -12.11993 -11.82714 -11.53804 -11.41903 -10.99384 -10.88457 -10.83853 -10.81608 -10.19378 -10.02791 -8.91316 -7.87837 -5.12798 -0.41317 -0.06948 1.33004 1.42288 1.45082 1.47201 1.53237 2.12887 2.17808 2.49759 2.59110 2.94442 3.00480 3.47185 3.55105 3.82209 3.89881 3.98779 4.04758 4.15543 4.27671 4.33311 4.39532 4.40951 4.41245 4.55024 4.61590 4.69361 4.70172 4.79390 4.83395 4.83825 4.93618 5.04149 5.10718 5.23577 5.34647 5.42219 5.53782 5.55535 5.62337 5.65551 5.83692 5.94355 6.34862 6.52486 6.79850 7.23486 7.40713 8.20011 8.40590 9.36502 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.004530 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.394048 B = 6178.960699 C = 7646.401448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.415 3.585 4 N -0.592 5.592 5 C 0.391 3.609 6 N -0.587 5.587 7 C 0.423 3.577 8 O -0.305 6.305 9 C 0.031 3.969 10 C -0.306 4.306 11 C 0.590 3.410 12 O -0.579 6.579 13 N -0.689 5.689 14 C 0.146 3.854 15 H 0.047 0.953 16 C -0.149 4.149 17 C -0.117 4.117 18 C 0.164 3.836 19 H 0.038 0.962 20 C -0.154 4.154 21 N -0.731 5.731 22 C -0.215 4.215 23 H 0.070 0.930 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.957 3.043 27 H -0.259 1.259 28 H -0.294 1.294 29 H -0.303 1.303 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.258 0.742 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.370 0.630 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 24.219 -8.484 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.210 6.210 3 C 0.229 3.771 4 N -0.327 5.327 5 C 0.105 3.895 6 N -0.323 5.323 7 C 0.237 3.763 8 O -0.208 6.208 9 C -0.062 4.062 10 C -0.316 4.316 11 C 0.375 3.625 12 O -0.458 6.458 13 N -0.339 5.339 14 C 0.042 3.958 15 H 0.065 0.935 16 C -0.207 4.207 17 C -0.156 4.156 18 C 0.056 3.944 19 H 0.056 0.944 20 C -0.214 4.214 21 N -0.371 5.371 22 C -0.347 4.347 23 H 0.088 0.912 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.788 3.212 27 H -0.183 1.183 28 H -0.222 1.222 29 H -0.232 1.232 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.273 0.727 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.243 0.757 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.201 0.799 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.694 24.125 -7.761 25.399 hybrid contribution -0.583 -1.292 0.789 1.623 sum 1.111 22.832 -6.972 23.899 Atomic orbital electron populations 1.23253 0.74097 1.04574 1.03975 1.86369 1.25899 1.23952 1.84807 1.19875 0.87150 0.85937 0.84113 1.68343 1.40294 0.98537 1.25571 1.25593 0.86900 0.94763 0.82260 1.68342 1.07637 1.30648 1.25628 1.19634 0.85490 0.87112 0.84015 1.86249 1.14756 1.34609 1.85176 1.23369 1.00677 0.78467 1.03728 1.19497 0.92487 0.94284 1.25287 1.17547 0.78421 0.82538 0.84031 1.90786 1.57653 1.64165 1.33245 1.45769 1.52216 1.28278 1.07626 1.20916 0.90502 0.85091 0.99310 0.93480 1.22063 0.94410 1.02323 1.01895 1.22085 0.96988 1.00241 0.96254 1.20489 0.94952 0.90935 0.87985 0.94388 1.22285 1.00360 1.00759 0.97978 1.42603 1.06125 1.46409 1.41917 1.19506 0.87157 1.15572 1.12468 0.91223 1.25417 1.00316 1.00747 1.00730 1.69815 1.30827 1.30508 1.31209 0.85283 0.81127 0.77358 0.77468 1.18314 1.22189 1.23159 0.88013 0.90727 0.89696 0.72662 0.85715 0.90295 0.91363 0.75711 0.89903 0.94510 0.90827 0.90152 0.87668 0.95080 0.90682 0.93751 0.79881 0.94599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.41 113.37 1.18 2.10 16 2 O -0.31 -10.96 10.02 -85.69 -0.86 -11.82 16 3 C 0.41 13.02 7.54 85.13 0.64 13.66 16 4 N -0.59 -14.14 9.37 -312.15 -2.92 -17.07 16 5 C 0.39 6.83 12.26 180.89 2.22 9.05 16 6 N -0.59 -12.20 9.36 -312.15 -2.92 -15.12 16 7 C 0.42 11.33 7.54 85.13 0.64 11.97 16 8 O -0.30 -7.54 10.02 -85.65 -0.86 -8.40 16 9 C 0.03 0.44 10.41 113.37 1.18 1.62 16 10 C -0.31 -10.06 5.68 -19.75 -0.11 -10.18 16 11 C 0.59 23.32 6.48 86.60 0.56 23.88 16 12 O -0.58 -29.08 16.77 -4.14 -0.07 -29.15 16 13 N -0.69 -22.85 4.44 -446.00 -1.98 -24.83 16 14 C 0.15 5.09 2.52 44.99 0.11 5.20 16 15 H 0.05 2.24 7.05 -2.39 -0.02 2.22 16 16 C -0.15 -4.24 9.48 71.98 0.68 -3.56 16 17 C -0.12 -3.52 4.29 30.59 0.13 -3.39 16 18 C 0.16 6.26 2.84 44.99 0.13 6.39 16 19 H 0.04 1.52 7.56 -2.39 -0.02 1.50 16 20 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 21 N -0.73 -37.20 4.49 -322.94 -1.45 -38.65 16 22 C -0.21 -12.23 9.93 84.03 0.83 -11.39 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 24 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 25 N -0.97 -62.54 13.06 21.65 0.28 -62.25 16 26 Si 0.96 48.29 29.55 68.60 2.03 50.32 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 29 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 1.75 8.12 -2.38 -0.02 1.73 16 32 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 33 H 0.26 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 36 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 37 H 0.41 10.86 8.59 -92.70 -0.80 10.07 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.37 20.57 7.80 -92.71 -0.72 19.84 16 47 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -83.85 401.86 0.07 -83.77 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.52 Total: 36.68 kcal Atomic # 6 Polarization: 27.16 SS G_CDS: 9.35 Total: 36.51 kcal Atomic # 7 Polarization: -148.92 SS G_CDS: -9.00 Total: -157.92 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.79 Total: -49.37 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -83.85 0.07 -83.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146808960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.147 kcal (2) G-P(sol) polarization free energy of solvation -83.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds