Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35285 * 117.00067 * 2 1 4 4 N 1.32816 * 120.58528 * 0.29204 * 3 2 1 5 5 C 1.31795 * 121.04704 * 180.28853 * 4 3 2 6 6 N 1.31785 * 122.29697 * 359.69452 * 5 4 3 7 7 C 1.32810 * 121.04801 * 0.02562 * 6 5 4 8 8 O 1.35286 * 120.58846 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99883 * 0.02562 * 8 7 6 10 10 C 1.40636 * 120.59257 * 180.02562 * 3 2 1 11 11 C 1.47220 * 121.01892 * 0.02562 * 10 3 2 12 12 O 1.21615 * 119.99973 * 269.72204 * 11 10 3 13 13 N 1.34779 * 119.99662 * 89.71964 * 11 10 3 14 14 C 1.46496 * 119.99550 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47509 * 324.99724 * 14 13 11 16 16 C 1.52999 * 109.47410 * 85.00095 * 14 13 11 17 17 C 1.52998 * 109.47164 * 205.00192 * 14 13 11 18 18 C 1.52998 * 109.47384 * 64.99625 * 17 14 13 19 19 H 1.09003 * 109.47082 * 305.00221 * 18 17 14 20 20 C 1.52995 * 109.47443 * 185.00170 * 18 17 14 21 21 N 1.46498 * 109.47009 * 65.00045 * 18 17 14 22 22 C 1.36935 * 120.00239 * 204.99963 * 21 18 17 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08996 * 109.46870 * 299.99549 * 1 2 3 31 31 H 1.08994 * 109.46844 * 59.99994 * 1 2 3 32 32 H 1.08996 * 109.46442 * 179.97438 * 1 2 3 33 33 H 1.07999 * 118.84946 * 179.68378 * 5 4 3 34 34 H 1.09005 * 109.47078 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47087 * 299.99645 * 9 8 7 36 36 H 1.09004 * 109.47428 * 60.00123 * 9 8 7 37 37 H 0.96994 * 120.00258 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.47346 * 179.97438 * 16 14 13 39 39 H 1.09003 * 109.47191 * 299.99550 * 16 14 13 40 40 H 1.08996 * 109.47126 * 60.00048 * 16 14 13 41 41 H 1.08997 * 109.46877 * 305.00014 * 17 14 13 42 42 H 1.08999 * 109.47306 * 185.00166 * 17 14 13 43 43 H 1.08996 * 109.47329 * 300.00343 * 20 18 17 44 44 H 1.09003 * 109.46933 * 60.00266 * 20 18 17 45 45 H 1.09004 * 109.47411 * 179.97438 * 20 18 17 46 46 H 0.97004 * 119.99747 * 25.00702 * 21 18 17 47 47 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3313 2.3266 0.0058 5 6 1.9201 3.5057 0.0002 6 7 3.2313 3.6379 -0.0054 7 6 4.0270 2.5746 -0.0062 8 8 5.3719 2.7211 -0.0125 9 6 5.8789 4.0572 -0.0177 10 6 3.4468 1.2935 -0.0005 11 6 4.2830 0.0818 -0.0017 12 8 4.6331 -0.4164 1.0511 13 7 4.6606 -0.4752 -1.1695 14 6 5.4922 -1.6813 -1.1706 15 1 6.1874 -1.6441 -0.3318 16 6 4.5993 -2.9167 -1.0386 17 6 6.2780 -1.7577 -2.4811 18 6 7.2613 -0.5878 -2.5551 19 1 6.7207 0.3499 -2.4266 20 6 7.9577 -0.5924 -3.9174 21 7 8.2626 -0.7237 -1.4944 22 6 8.9116 0.3846 -1.0194 23 1 8.6851 1.3590 -1.4266 24 6 9.8607 0.2559 -0.0147 25 7 10.1329 -0.9309 0.4853 26 14 10.7456 1.7678 0.6337 27 1 11.9827 1.9939 -0.1560 28 1 9.8573 2.9515 0.5118 29 1 11.1002 1.5600 2.0607 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.3067 4.3945 0.0000 34 1 6.9686 4.0323 -0.0220 35 1 5.5234 4.5772 -0.9072 36 1 5.5314 4.5811 0.8728 37 1 4.3817 -0.0777 -2.0091 38 1 5.2181 -3.8140 -1.0399 39 1 4.0395 -2.8623 -0.1048 40 1 3.9043 -2.9539 -1.8773 41 1 5.5872 -1.7053 -3.3225 42 1 6.8282 -2.6978 -2.5206 43 1 8.4983 -1.5300 -4.0460 44 1 7.2127 -0.4912 -4.7066 45 1 8.6580 0.2414 -3.9703 46 1 8.4659 -1.5988 -1.1285 47 1 9.6732 -1.7160 0.1489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146808961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = -47.864621 kcal Electronic energy + Delta-G solvation = -31182.840043 eV Core-core repulsion = 26981.573353 eV Total energy + Delta-G solvation = -4201.266689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63030 -39.38944 -39.22907 -37.99473 -36.80978 -34.50529 -32.90343 -32.55804 -32.01331 -30.26603 -28.23902 -28.18668 -27.03703 -26.33359 -25.38925 -23.36163 -23.34512 -21.71053 -20.45110 -19.80299 -19.40285 -18.72997 -17.72363 -17.19114 -16.78462 -16.73128 -15.90674 -15.78719 -15.72046 -14.83277 -14.48562 -14.36812 -14.20197 -14.07006 -13.95802 -13.65166 -13.52246 -13.10587 -12.82981 -12.46670 -12.09832 -12.04888 -12.02471 -11.99258 -11.67613 -11.63521 -11.53172 -11.41007 -10.95115 -10.68521 -10.42120 -10.38685 -10.03371 -9.93474 -9.87167 -9.84529 -9.61035 -9.07191 -9.06017 -8.80167 -8.65479 -6.90210 -5.96554 -2.95116 0.57072 0.96961 2.28093 2.80375 3.17771 3.35298 3.52205 3.54238 3.60886 3.74971 3.80047 3.90565 4.64768 4.76410 4.90089 4.98893 5.03687 5.04883 5.18854 5.24654 5.29224 5.31310 5.42371 5.47058 5.54139 5.68859 5.71552 5.73833 5.88497 5.95261 5.99892 6.12137 6.27045 6.36707 6.42084 6.50987 6.53847 6.68264 6.74558 6.82742 6.93381 6.99035 7.06375 7.74230 7.81616 7.92352 8.55922 8.88282 9.36005 10.22180 10.37192 11.52153 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.004538 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.317311 B = 6168.182586 C = 7646.035313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.288 6.288 3 C 0.416 3.584 4 N -0.597 5.597 5 C 0.381 3.619 6 N -0.593 5.593 7 C 0.422 3.578 8 O -0.270 6.270 9 C 0.038 3.962 10 C -0.274 4.274 11 C 0.592 3.408 12 O -0.519 6.519 13 N -0.703 5.703 14 C 0.146 3.854 15 H 0.102 0.898 16 C -0.160 4.160 17 C -0.132 4.132 18 C 0.177 3.823 19 H 0.048 0.952 20 C -0.164 4.164 21 N -0.730 5.730 22 C -0.318 4.318 23 H 0.060 0.940 24 C -0.046 4.046 25 N -0.946 5.946 26 Si 1.079 2.921 27 H -0.298 1.298 28 H -0.297 1.297 29 H -0.289 1.289 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.207 0.793 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.365 0.635 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 5.914 -6.134 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.191 6.191 3 C 0.232 3.768 4 N -0.332 5.332 5 C 0.093 3.907 6 N -0.328 5.328 7 C 0.237 3.763 8 O -0.171 6.171 9 C -0.057 4.057 10 C -0.284 4.284 11 C 0.375 3.625 12 O -0.394 6.394 13 N -0.353 5.353 14 C 0.042 3.958 15 H 0.120 0.880 16 C -0.218 4.218 17 C -0.171 4.171 18 C 0.067 3.933 19 H 0.066 0.934 20 C -0.224 4.224 21 N -0.373 5.373 22 C -0.449 4.449 23 H 0.078 0.922 24 C -0.243 4.243 25 N -0.592 5.592 26 Si 0.911 3.089 27 H -0.226 1.226 28 H -0.224 1.224 29 H -0.215 1.215 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.223 0.777 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.198 0.802 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.503 6.544 -4.327 21.022 hybrid contribution -0.998 -0.791 -1.489 1.959 sum -20.501 5.752 -5.816 22.073 Atomic orbital electron populations 1.23034 0.75998 1.03704 1.02946 1.86258 1.23761 1.23325 1.85731 1.19597 0.87012 0.85301 0.84934 1.68175 1.40674 0.98677 1.25670 1.24487 0.87053 0.94000 0.85122 1.68237 1.07120 1.32259 1.25143 1.19801 0.85423 0.87408 0.83688 1.86441 1.14178 1.32138 1.84393 1.23121 1.00353 0.79782 1.02444 1.19563 0.92059 0.94705 1.22065 1.17092 0.79007 0.81959 0.84421 1.90822 1.54594 1.62677 1.31267 1.45837 1.52794 1.29166 1.07497 1.21020 0.91721 0.82701 1.00380 0.87956 1.22177 1.00064 0.97851 1.01751 1.22188 0.98223 1.00912 0.95743 1.20147 0.89332 0.95393 0.88404 0.93439 1.22438 1.00199 1.01544 0.98241 1.42395 1.45731 1.06936 1.42277 1.19945 1.18813 0.87726 1.18410 0.92153 1.25613 0.98744 1.03318 0.96624 1.70826 1.45296 0.98138 1.44953 0.83250 0.75379 0.73791 0.76494 1.22604 1.22420 1.21505 0.91655 0.91686 0.87985 0.77668 0.87248 0.91740 0.91747 0.77414 0.91810 0.92338 0.93063 0.91977 0.90727 0.93692 0.94715 0.92892 0.80156 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.41 101.05 1.05 1.37 16 2 O -0.29 -3.73 10.02 -17.55 -0.18 -3.90 16 3 C 0.42 5.82 7.54 -16.22 -0.12 5.69 16 4 N -0.60 -6.99 9.37 -14.37 -0.13 -7.12 16 5 C 0.38 3.95 12.26 -92.16 -1.13 2.82 16 6 N -0.59 -7.68 9.36 -14.37 -0.13 -7.81 16 7 C 0.42 6.71 7.54 -16.22 -0.12 6.59 16 8 O -0.27 -4.76 10.02 -17.55 -0.18 -4.94 16 9 C 0.04 0.50 10.41 101.05 1.05 1.56 16 10 C -0.27 -4.50 5.68 -104.44 -0.59 -5.10 16 11 C 0.59 11.33 6.48 -12.61 -0.08 11.25 16 12 O -0.52 -12.22 16.77 5.26 0.09 -12.13 16 13 N -0.70 -11.66 4.44 -54.95 -0.24 -11.91 16 14 C 0.15 2.51 2.52 -67.93 -0.17 2.34 16 15 H 0.10 2.28 7.05 -51.93 -0.37 1.91 16 16 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 17 C -0.13 -2.10 4.29 -26.73 -0.11 -2.21 16 18 C 0.18 3.48 2.84 -67.93 -0.19 3.29 16 19 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 20 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 21 N -0.73 -18.17 4.49 -53.43 -0.24 -18.41 16 22 C -0.32 -8.96 9.93 -15.06 -0.15 -9.11 16 23 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 24 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 25 N -0.95 -29.99 13.70 55.49 0.76 -29.23 16 26 Si 1.08 26.74 29.92 -169.99 -5.09 21.65 16 27 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.39 5.52 8.59 -40.82 -0.35 5.17 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.37 9.51 6.63 -40.82 -0.27 9.24 16 47 H 0.25 7.96 6.77 -40.82 -0.28 7.69 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -36.83 400.15 -6.48 -43.30 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.20 Total: 12.01 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 0.03 Total: 12.46 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: 0.01 Total: -74.48 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.26 Total: -20.97 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -5.09 Total: 21.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.83 -6.48 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146808961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.562 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds