Wall clock time and date at job start Tue Mar 31 2020 22:17:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.46615 * 2 1
4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3
5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1
6 6 C 1.53005 * 109.47390 * 179.97438 * 5 4 2
7 7 C 1.52997 * 109.47363 * 179.97438 * 6 5 4
8 8 N 1.46905 * 109.46873 * 180.02562 * 7 6 5
9 9 C 1.46904 * 110.99568 * 180.02562 * 8 7 6
10 10 C 1.50704 * 109.46851 * 180.02562 * 9 8 7
11 11 O 1.21295 * 119.99743 * 359.97438 * 10 9 8
12 12 N 1.34775 * 119.99930 * 179.97438 * 10 9 8
13 13 C 1.37089 * 119.99942 * 179.97438 * 12 10 9
14 14 H 1.08003 * 120.00578 * 0.02562 * 13 12 10
15 15 C 1.38954 * 120.00045 * 180.02562 * 13 12 10
16 16 N 1.31406 * 119.99768 * 359.97438 * 15 13 12
17 17 Si 1.86803 * 120.00152 * 180.02562 * 15 13 12
18 18 H 1.48492 * 109.47008 * 89.99631 * 17 15 13
19 19 H 1.48495 * 109.47022 * 209.99823 * 17 15 13
20 20 H 1.48501 * 109.47105 * 329.99846 * 17 15 13
21 21 N 1.46499 * 109.47277 * 119.99916 * 2 1 3
22 22 C 1.34784 * 119.99971 * 275.00026 * 21 2 1
23 23 O 1.21605 * 119.99806 * 359.72704 * 22 21 2
24 24 C 1.47418 * 119.99954 * 179.97438 * 22 21 2
25 25 C 1.36088 * 126.44976 * 180.02562 * 24 22 21
26 26 O 1.34258 * 106.94887 * 180.02562 * 25 24 22
27 27 C 1.34051 * 108.22974 * 359.97438 * 26 25 24
28 28 N 1.29936 * 109.23904 * 359.72222 * 27 26 25
29 29 H 1.08995 * 109.46954 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.47307 * 300.00029 * 1 2 3
31 31 H 1.09000 * 109.47576 * 59.99448 * 1 2 3
32 32 H 1.09003 * 109.47330 * 294.99933 * 4 2 1
33 33 H 1.08999 * 109.47417 * 54.99517 * 4 2 1
34 34 H 1.08998 * 109.47016 * 299.99692 * 5 4 2
35 35 H 1.08993 * 109.47367 * 59.99969 * 5 4 2
36 36 H 1.09007 * 109.47110 * 300.00541 * 6 5 4
37 37 H 1.09007 * 109.46838 * 59.99790 * 6 5 4
38 38 H 1.08998 * 109.47343 * 300.00144 * 7 6 5
39 39 H 1.09001 * 109.46521 * 60.00767 * 7 6 5
40 40 H 1.00895 * 110.99969 * 56.04769 * 8 7 6
41 41 H 1.09005 * 109.46964 * 299.99732 * 9 8 7
42 42 H 1.08996 * 109.47145 * 60.00269 * 9 8 7
43 43 H 0.96998 * 119.99912 * 0.02562 * 12 10 9
44 44 H 0.97002 * 120.00019 * 179.97438 * 16 15 13
45 45 H 0.96999 * 119.99984 * 94.99874 * 21 2 1
46 46 H 1.08004 * 126.52508 * 359.97438 * 25 24 22
47 47 H 1.07991 * 125.37688 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5648 -0.6132 -1.3137
6 6 4.0749 -1.3349 -2.5626
7 6 5.5997 -1.2264 -2.6274
8 7 6.0893 -1.9189 -3.8269
9 6 7.5529 -1.8358 -3.9221
10 6 8.0172 -2.5551 -5.1623
11 8 7.2084 -3.0852 -5.8946
12 7 9.3310 -2.6093 -5.4578
13 6 9.7535 -3.2641 -6.5857
14 1 9.0334 -3.7362 -7.2378
15 6 11.1081 -3.3205 -6.8901
16 7 11.9841 -2.7458 -6.0971
17 14 11.6837 -4.2121 -8.4274
18 1 11.7210 -3.2605 -9.5668
19 1 13.0429 -4.7649 -8.1994
20 1 10.7445 -5.3196 -8.7382
21 7 2.0184 -0.6906 1.1962
22 6 2.1471 -0.0182 2.3572
23 8 1.8626 1.1629 2.4105
24 6 2.6380 -0.7132 3.5610
25 6 2.8171 -0.1660 4.7940
26 8 3.2760 -1.1427 5.5928
27 6 3.3762 -2.2654 4.8673
28 7 2.9915 -2.0242 3.6498
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 1.7516 -1.7714 -1.2056
33 1 1.6053 -0.2617 -2.1369
34 1 3.8531 0.4371 -1.3573
35 1 3.9994 -1.0727 -0.4260
36 1 3.7865 -2.3852 -2.5186
37 1 3.6402 -0.8758 -3.4506
38 1 5.8876 -0.1761 -2.6717
39 1 6.0345 -1.6854 -1.7395
40 1 5.6512 -1.5539 -4.6593
41 1 7.8547 -0.7897 -3.9747
42 1 8.0010 -2.2996 -3.0434
43 1 9.9778 -2.1857 -4.8720
44 1 12.9298 -2.7854 -6.3093
45 1 2.2491 -1.6317 1.1526
46 1 2.6270 0.8591 5.0761
47 1 3.7178 -3.2206 5.2375
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169749222.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:12
Heat of formation + Delta-G solvation = -67.909767 kcal
Electronic energy + Delta-G solvation = -27463.457185 eV
Core-core repulsion = 23261.321273 eV
Total energy + Delta-G solvation = -4202.135912 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.92523 -40.09695 -38.29921 -37.27758 -35.86363 -35.37317 -33.96263 -33.28864
-31.53088 -31.17674 -30.62215 -28.63438 -26.19554 -25.03393 -24.14649 -23.28243
-22.61996 -21.35361 -21.19990 -20.84666 -19.17920 -18.94896 -17.85634 -17.24088
-17.09792 -16.68805 -16.12688 -15.79495 -15.57759 -15.23282 -14.94925 -14.53413
-14.47470 -14.43496 -14.10515 -14.00997 -13.71124 -13.43969 -13.17689 -13.14682
-12.54036 -12.31953 -12.15654 -11.91269 -11.66896 -11.58145 -11.48651 -11.37964
-11.32774 -11.09620 -11.02360 -10.80652 -10.64367 -10.54933 -10.38050 -10.19933
-9.74248 -9.49256 -9.41115 -8.42927 -8.01233 -7.93519 -6.39993 -3.80728
0.62322 1.54365 2.16569 2.72230 2.89229 3.19078 3.27461 3.33730
3.52854 3.93347 4.07043 4.22879 4.32327 4.35356 4.56446 4.65701
4.72656 4.98616 4.99948 5.08314 5.09479 5.15862 5.22794 5.26153
5.32263 5.38492 5.50383 5.53150 5.56931 5.65813 5.70905 5.79180
5.83742 5.86278 5.93211 6.02994 6.11169 6.21936 6.25667 6.32681
6.83978 7.17899 7.28197 7.56843 7.72465 7.76769 8.08425 8.63499
9.19713 9.56511 10.08198 10.77834
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.015841 B = 0.001526 C = 0.001427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1767.124647 B =18349.931738 C =19617.109759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.140 3.860
3 H 0.091 0.909
4 C -0.127 4.127
5 C -0.118 4.118
6 C -0.116 4.116
7 C 0.059 3.941
8 N -0.671 5.671
9 C 0.051 3.949
10 C 0.441 3.559
11 O -0.583 6.583
12 N -0.565 5.565
13 C -0.299 4.299
14 H 0.103 0.897
15 C 0.021 3.979
16 N -0.902 5.902
17 Si 0.931 3.069
18 H -0.278 1.278
19 H -0.284 1.284
20 H -0.269 1.269
21 N -0.704 5.704
22 C 0.603 3.397
23 O -0.538 6.538
24 C -0.077 4.077
25 C 0.017 3.983
26 O -0.199 6.199
27 C 0.182 3.818
28 N -0.467 5.467
29 H 0.058 0.942
30 H 0.059 0.941
31 H 0.068 0.932
32 H 0.071 0.929
33 H 0.082 0.918
34 H 0.062 0.938
35 H 0.063 0.937
36 H 0.072 0.928
37 H 0.061 0.939
38 H 0.024 0.976
39 H 0.068 0.932
40 H 0.348 0.652
41 H 0.042 0.958
42 H 0.085 0.915
43 H 0.392 0.608
44 H 0.271 0.729
45 H 0.410 0.590
46 H 0.230 0.770
47 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.089 5.991 23.663 31.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.036 3.964
3 H 0.109 0.891
4 C -0.165 4.165
5 C -0.156 4.156
6 C -0.154 4.154
7 C -0.071 4.071
8 N -0.303 5.303
9 C -0.082 4.082
10 C 0.227 3.773
11 O -0.468 6.468
12 N -0.201 5.201
13 C -0.429 4.429
14 H 0.121 0.879
15 C -0.180 4.180
16 N -0.544 5.544
17 Si 0.758 3.242
18 H -0.204 1.204
19 H -0.209 1.209
20 H -0.194 1.194
21 N -0.355 5.355
22 C 0.388 3.612
23 O -0.416 6.416
24 C -0.196 4.196
25 C -0.058 4.058
26 O -0.084 6.084
27 C -0.047 4.047
28 N -0.196 5.196
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.087 0.913
32 H 0.090 0.910
33 H 0.100 0.900
34 H 0.080 0.920
35 H 0.082 0.918
36 H 0.091 0.909
37 H 0.080 0.920
38 H 0.042 0.958
39 H 0.087 0.913
40 H 0.167 0.833
41 H 0.060 0.940
42 H 0.103 0.897
43 H 0.225 0.775
44 H 0.081 0.919
45 H 0.246 0.754
46 H 0.247 0.753
47 H 0.272 0.728
Dipole moment (debyes) X Y Z Total
from point charges -20.633 5.415 22.972 31.349
hybrid contribution 1.180 0.672 -0.050 1.359
sum -19.453 6.087 22.922 30.674
Atomic orbital electron populations
1.22184 0.95036 1.02329 1.02666 1.21109 0.94060 0.97685 0.83565
0.89122 1.21919 0.96425 1.01318 0.96799 1.21560 0.94576 1.00951
0.98521 1.21549 0.94906 1.01513 0.97450 1.21973 0.95070 0.95776
0.94251 1.60071 1.04807 1.60082 1.05335 1.21669 0.89067 0.98670
0.98815 1.19838 0.83396 0.86072 0.88041 1.90517 1.53409 1.50448
1.52381 1.41866 1.05447 1.48982 1.23830 1.19711 0.91994 1.30219
1.00953 0.87918 1.25269 0.95621 0.97864 0.99265 1.69613 1.02504
1.44367 1.37892 0.85847 0.77887 0.79515 0.80975 1.20440 1.20933
1.19406 1.45915 1.65965 1.14672 1.08981 1.16741 0.77194 0.85498
0.81722 1.90831 1.51222 1.14748 1.84766 1.21827 1.10475 0.91076
0.96255 1.25344 0.97321 0.94455 0.88634 1.84466 1.63482 1.19097
1.41378 1.28190 0.99811 0.91446 0.85227 1.70775 1.14653 1.14140
1.20013 0.92308 0.92170 0.91289 0.91006 0.89969 0.91969 0.91800
0.90888 0.91996 0.95796 0.91325 0.83276 0.93990 0.89690 0.77461
0.91896 0.75436 0.75347 0.72815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16
2 C 0.14 1.07 2.58 -67.94 -0.18 0.89 16
3 H 0.09 0.82 7.57 -51.93 -0.39 0.43 16
4 C -0.13 -0.87 4.75 -26.74 -0.13 -1.00 16
5 C -0.12 -0.99 5.10 -26.73 -0.14 -1.13 16
6 C -0.12 -1.20 5.47 -26.73 -0.15 -1.35 16
7 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16
8 N -0.67 -11.27 6.13 -115.05 -0.70 -11.98 16
9 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16
10 C 0.44 10.70 7.82 -10.98 -0.09 10.62 16
11 O -0.58 -16.21 15.78 5.54 0.09 -16.12 16
12 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16
13 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16
14 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16
15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
16 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16
17 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16
18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
21 N -0.70 -5.80 4.53 -54.88 -0.25 -6.05 16
22 C 0.60 6.01 7.78 -12.52 -0.10 5.91 16
23 O -0.54 -6.68 16.55 5.27 0.09 -6.59 16
24 C -0.08 -0.66 6.99 -83.02 -0.58 -1.24 16
25 C 0.02 0.11 11.95 29.96 0.36 0.47 16
26 O -0.20 -1.15 10.73 6.50 0.07 -1.08 16
27 C 0.18 0.89 13.19 51.96 0.69 1.57 16
28 N -0.47 -3.67 11.06 -11.49 -0.13 -3.80 16
29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16
36 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16
37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16
39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.35 5.99 8.43 -39.29 -0.33 5.65 16
41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
43 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16
44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
45 H 0.41 3.06 8.33 -40.82 -0.34 2.72 16
46 H 0.23 0.88 8.06 -52.48 -0.42 0.46 16
47 H 0.26 0.01 8.06 -52.49 -0.42 -0.41 16
LS Contribution 405.40 15.07 6.11 6.11
Total: -1.00 -35.36 405.40 -6.55 -41.91
By element:
Atomic # 1 Polarization: 19.92 SS G_CDS: -7.22 Total: 12.70 kcal
Atomic # 6 Polarization: 7.68 SS G_CDS: -0.25 Total: 7.44 kcal
Atomic # 7 Polarization: -60.19 SS G_CDS: -0.41 Total: -60.60 kcal
Atomic # 8 Polarization: -24.04 SS G_CDS: 0.24 Total: -23.79 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -35.36 -6.55 -41.91 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169749222.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.998 kcal
(2) G-P(sol) polarization free energy of solvation -35.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds