Wall clock time and date at job start Tue Mar 31 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46742 * 2 1 4 4 C 1.52999 * 109.47310 * 239.99915 * 2 1 3 5 5 C 1.53000 * 109.47318 * 174.99640 * 4 2 1 6 6 C 1.53001 * 109.46964 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46964 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47180 * 179.97438 * 7 6 5 9 9 C 1.36942 * 119.99906 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99785 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00050 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46829 * 60.00133 * 13 11 9 15 15 H 1.48496 * 109.47194 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47204 * 300.00009 * 13 11 9 17 17 N 1.46495 * 109.47211 * 119.99347 * 2 1 3 18 18 C 1.34774 * 120.00590 * 275.00260 * 17 2 1 19 19 O 1.21275 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00145 * 180.02562 * 18 17 2 21 21 N 1.46497 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.36156 * 119.85669 * 270.02049 * 21 20 18 23 23 C 1.35539 * 119.26473 * 180.02562 * 22 21 20 24 24 C 1.40741 * 118.99822 * 359.96522 * 23 22 21 25 25 O 1.35154 * 120.16611 * 180.29211 * 24 23 22 26 26 N 1.32434 * 119.66600 * 0.02562 * 24 23 22 27 27 C 1.33264 * 120.73152 * 0.02562 * 26 24 23 28 28 O 1.21976 * 119.47840 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47316 * 299.99928 * 1 2 3 31 31 H 1.09001 * 109.47325 * 60.00048 * 1 2 3 32 32 H 1.09000 * 109.46822 * 295.00027 * 4 2 1 33 33 H 1.09004 * 109.46859 * 54.99757 * 4 2 1 34 34 H 1.08995 * 109.46848 * 300.00277 * 5 4 2 35 35 H 1.09007 * 109.46753 * 59.99813 * 5 4 2 36 36 H 1.09000 * 109.47095 * 300.00338 * 6 5 4 37 37 H 1.09004 * 109.46939 * 60.00285 * 6 5 4 38 38 H 1.09003 * 109.47184 * 300.00524 * 7 6 5 39 39 H 1.09007 * 109.46753 * 59.99930 * 7 6 5 40 40 H 0.97001 * 120.00181 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99647 * 179.97438 * 12 11 9 42 42 H 0.97008 * 119.99671 * 95.00211 * 17 2 1 43 43 H 1.09005 * 109.47514 * 59.99709 * 20 18 17 44 44 H 1.09007 * 109.47272 * 299.99972 * 20 18 17 45 45 H 1.08005 * 120.36752 * 359.97438 * 22 21 20 46 46 H 1.08001 * 120.50375 * 179.97438 * 23 22 21 47 47 H 0.96699 * 114.00080 * 179.72466 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5626 7 6 5.5997 -1.2276 -2.6268 8 7 6.0881 -1.9192 -3.8222 9 6 7.4303 -1.9566 -4.0913 10 1 8.1288 -1.4765 -3.4219 11 6 7.8931 -2.6115 -5.2243 12 7 7.0418 -3.1970 -6.0398 13 14 9.7240 -2.6631 -5.5910 14 1 10.4339 -3.3352 -4.4731 15 1 9.9558 -3.4167 -6.8494 16 1 10.2378 -1.2781 -5.7422 17 7 2.0183 -0.6904 1.1962 18 6 2.1470 -0.0181 2.3571 19 8 1.8590 1.1587 2.4115 20 6 2.6499 -0.7283 3.5874 21 7 2.6997 0.2131 4.7088 22 6 3.8315 0.9342 4.9387 23 6 3.8645 1.8014 5.9798 24 6 2.7248 1.9325 6.7950 25 8 2.7298 2.7946 7.8360 26 7 1.6455 1.2108 6.5338 27 6 1.6266 0.3610 5.5075 28 8 0.6201 -0.2921 5.2875 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4370 -1.3574 35 1 3.9994 -1.0727 -0.4259 36 1 3.7865 -2.3853 -2.5185 37 1 3.6402 -0.8759 -3.4506 38 1 5.8884 -0.1774 -2.6706 39 1 6.0339 -1.6869 -1.7387 40 1 5.4608 -2.3507 -4.4233 41 1 7.3652 -3.6543 -6.8318 42 1 2.2490 -1.6317 1.1527 43 1 3.6493 -1.1202 3.3979 44 1 1.9777 -1.5507 3.8326 45 1 4.6937 0.8159 4.2990 46 1 4.7520 2.3832 6.1807 47 1 1.9005 2.8162 8.3327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171704298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:41 Heat of formation + Delta-G solvation = -66.709007 kcal Electronic energy + Delta-G solvation = -28360.015191 eV Core-core repulsion = 24157.931348 eV Total energy + Delta-G solvation = -4202.083843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26712 -40.18397 -39.04403 -37.26835 -36.94604 -35.36496 -34.93710 -33.37848 -32.02247 -31.53589 -30.40712 -28.46642 -27.50282 -25.29695 -24.34454 -23.82471 -22.37812 -21.36115 -20.89828 -20.71952 -20.19362 -18.59220 -18.08073 -17.88502 -17.04164 -16.52110 -16.21350 -16.12028 -15.54721 -15.18231 -15.00851 -14.80904 -14.68498 -14.40269 -14.08892 -14.03505 -13.73027 -13.66332 -13.20531 -13.15521 -13.01755 -12.66971 -12.44202 -12.37623 -11.83163 -11.54020 -11.34314 -11.19927 -11.05507 -10.83983 -10.78385 -10.77561 -10.49123 -10.37745 -10.26841 -10.21566 -10.05137 -9.70750 -9.40748 -9.04010 -8.88923 -6.94145 -5.78587 -3.07356 0.20431 1.27003 1.79574 2.15357 2.72022 2.76665 3.41110 3.41734 3.45928 3.47293 3.77350 3.99453 4.19604 4.22324 4.46812 4.54047 4.60979 4.64271 4.81537 4.88688 4.89644 4.96486 5.19181 5.33320 5.39347 5.50038 5.54606 5.58367 5.63082 5.71603 5.81743 5.88823 5.91091 6.04510 6.10747 6.23128 6.26704 6.33145 6.39648 6.58529 6.83500 6.87669 7.06285 7.36097 7.66622 7.74743 7.77863 8.40671 9.51306 10.10353 10.44646 11.44302 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.001812 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.777211 B =15448.535904 C =16851.105865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.241 4.241 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.715 5.715 18 C 0.503 3.497 19 O -0.529 6.529 20 C 0.074 3.926 21 N -0.511 5.511 22 C 0.213 3.787 23 C -0.285 4.285 24 C 0.460 3.540 25 O -0.447 6.447 26 N -0.615 5.615 27 C 0.662 3.338 28 O -0.532 6.532 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.403 0.597 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.184 0.816 46 H 0.167 0.833 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 7.946 25.247 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.367 5.367 18 C 0.286 3.714 19 O -0.405 6.405 20 C -0.053 4.053 21 N -0.227 5.227 22 C 0.077 3.923 23 C -0.311 4.311 24 C 0.258 3.742 25 O -0.242 6.242 26 N -0.372 5.372 27 C 0.364 3.636 28 O -0.406 6.406 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.238 0.762 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.201 0.799 46 H 0.184 0.816 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -11.038 8.473 25.377 28.942 hybrid contribution 1.117 -0.656 -0.688 1.467 sum -9.921 7.817 24.689 27.733 Atomic orbital electron populations 1.22180 0.95158 1.02310 1.02616 1.21089 0.93936 0.97631 0.83488 0.89274 1.21956 0.96886 1.01060 0.96639 1.21517 0.93894 1.01061 0.98638 1.21735 0.97275 1.00306 0.97118 1.20639 0.90957 0.95282 0.90580 1.42380 1.05323 1.64926 1.25259 1.19199 0.83898 1.28588 1.05540 0.91294 1.24758 0.97752 1.00909 0.97689 1.69652 1.32882 1.40628 1.15110 0.86251 0.85060 0.77483 0.77290 1.21274 1.21653 1.21269 1.46013 1.67020 1.14255 1.09449 1.20583 0.78440 0.87706 0.84627 1.90764 1.49364 1.15779 1.84558 1.21858 1.06199 0.92924 0.84343 1.46010 1.13810 1.36168 1.26753 1.22371 0.89789 0.86444 0.93655 1.20625 1.01341 1.08927 1.00241 1.20442 0.88662 0.81802 0.83249 1.84993 1.43553 1.56054 1.39578 1.69649 1.27210 1.16892 1.23405 1.17273 0.82794 0.83194 0.80344 1.91009 1.29964 1.47448 1.72205 0.92306 0.92258 0.91375 0.91170 0.90042 0.92002 0.92209 0.92074 0.92013 0.96636 0.96712 0.78332 0.93463 0.76177 0.85399 0.84795 0.79857 0.81595 0.72559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.15 0.35 -1.12 16 2 C 0.14 1.26 2.57 -67.94 -0.17 1.09 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.22 5.10 -26.73 -0.14 -1.35 16 6 C -0.13 -1.86 5.33 -26.73 -0.14 -2.01 16 7 C 0.15 2.98 6.26 -4.04 -0.03 2.96 16 8 N -0.73 -18.62 5.60 -59.91 -0.34 -18.95 16 9 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 13 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 N -0.71 -5.43 4.53 -53.81 -0.24 -5.67 16 18 C 0.50 4.70 7.86 -10.99 -0.09 4.62 16 19 O -0.53 -7.28 16.09 5.56 0.09 -7.19 16 20 C 0.07 0.46 5.83 -5.20 -0.03 0.43 16 21 N -0.51 -4.37 2.08 -123.16 -0.26 -4.62 16 22 C 0.21 1.12 10.40 -16.60 -0.17 0.95 16 23 C -0.28 -1.60 10.03 -39.60 -0.40 -1.99 16 24 C 0.46 3.67 7.91 -16.35 -0.13 3.54 16 25 O -0.45 -2.45 13.55 -17.16 -0.23 -2.68 16 26 N -0.61 -7.16 10.40 -16.72 -0.17 -7.33 16 27 C 0.66 8.53 8.34 -88.43 -0.74 7.79 16 28 O -0.53 -8.75 16.72 4.94 0.08 -8.66 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.59 7.75 -51.93 -0.40 0.18 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.40 2.02 8.60 -40.82 -0.35 1.67 16 43 H 0.13 0.23 8.03 -51.93 -0.42 -0.19 16 44 H 0.13 0.84 7.38 -51.93 -0.38 0.45 16 45 H 0.18 0.20 8.06 -52.48 -0.42 -0.23 16 46 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.42 0.90 8.98 45.56 0.41 1.30 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -40.80 401.94 -7.84 -48.63 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.47 Total: 4.45 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.05 Total: 6.22 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.29 Total: -64.04 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.06 Total: -18.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -40.80 -7.84 -48.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171704298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.076 kcal (2) G-P(sol) polarization free energy of solvation -40.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds