Wall clock time and date at job start Tue Mar 31 2020 22:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46742 * 2 1 4 4 C 1.52999 * 109.47310 * 239.99915 * 2 1 3 5 5 C 1.53000 * 109.47318 * 174.99640 * 4 2 1 6 6 C 1.53001 * 109.46964 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46964 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47180 * 179.97438 * 7 6 5 9 9 C 1.36942 * 119.99906 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99785 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00050 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46829 * 60.00133 * 13 11 9 15 15 H 1.48496 * 109.47194 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47204 * 300.00009 * 13 11 9 17 17 N 1.46495 * 109.47211 * 119.99347 * 2 1 3 18 18 C 1.34774 * 120.00590 * 275.00260 * 17 2 1 19 19 O 1.21275 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00145 * 180.02562 * 18 17 2 21 21 N 1.46497 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.36156 * 119.85669 * 270.02049 * 21 20 18 23 23 C 1.35539 * 119.26473 * 180.02562 * 22 21 20 24 24 C 1.40741 * 118.99822 * 359.96522 * 23 22 21 25 25 O 1.35154 * 120.16611 * 180.29211 * 24 23 22 26 26 N 1.32434 * 119.66600 * 0.02562 * 24 23 22 27 27 C 1.33264 * 120.73152 * 0.02562 * 26 24 23 28 28 O 1.21976 * 119.47840 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47316 * 299.99928 * 1 2 3 31 31 H 1.09001 * 109.47325 * 60.00048 * 1 2 3 32 32 H 1.09000 * 109.46822 * 295.00027 * 4 2 1 33 33 H 1.09004 * 109.46859 * 54.99757 * 4 2 1 34 34 H 1.08995 * 109.46848 * 300.00277 * 5 4 2 35 35 H 1.09007 * 109.46753 * 59.99813 * 5 4 2 36 36 H 1.09000 * 109.47095 * 300.00338 * 6 5 4 37 37 H 1.09004 * 109.46939 * 60.00285 * 6 5 4 38 38 H 1.09003 * 109.47184 * 300.00524 * 7 6 5 39 39 H 1.09007 * 109.46753 * 59.99930 * 7 6 5 40 40 H 0.97001 * 120.00181 * 0.02562 * 8 7 6 41 41 H 0.96997 * 119.99647 * 179.97438 * 12 11 9 42 42 H 0.97008 * 119.99671 * 95.00211 * 17 2 1 43 43 H 1.09005 * 109.47514 * 59.99709 * 20 18 17 44 44 H 1.09007 * 109.47272 * 299.99972 * 20 18 17 45 45 H 1.08005 * 120.36752 * 359.97438 * 22 21 20 46 46 H 1.08001 * 120.50375 * 179.97438 * 23 22 21 47 47 H 0.96699 * 114.00080 * 179.72466 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5626 7 6 5.5997 -1.2276 -2.6268 8 7 6.0881 -1.9192 -3.8222 9 6 7.4303 -1.9566 -4.0913 10 1 8.1288 -1.4765 -3.4219 11 6 7.8931 -2.6115 -5.2243 12 7 7.0418 -3.1970 -6.0398 13 14 9.7240 -2.6631 -5.5910 14 1 10.4339 -3.3352 -4.4731 15 1 9.9558 -3.4167 -6.8494 16 1 10.2378 -1.2781 -5.7422 17 7 2.0183 -0.6904 1.1962 18 6 2.1470 -0.0181 2.3571 19 8 1.8590 1.1587 2.4115 20 6 2.6499 -0.7283 3.5874 21 7 2.6997 0.2131 4.7088 22 6 3.8315 0.9342 4.9387 23 6 3.8645 1.8014 5.9798 24 6 2.7248 1.9325 6.7950 25 8 2.7298 2.7946 7.8360 26 7 1.6455 1.2108 6.5338 27 6 1.6266 0.3610 5.5075 28 8 0.6201 -0.2921 5.2875 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4370 -1.3574 35 1 3.9994 -1.0727 -0.4259 36 1 3.7865 -2.3853 -2.5185 37 1 3.6402 -0.8759 -3.4506 38 1 5.8884 -0.1774 -2.6706 39 1 6.0339 -1.6869 -1.7387 40 1 5.4608 -2.3507 -4.4233 41 1 7.3652 -3.6543 -6.8318 42 1 2.2490 -1.6317 1.1527 43 1 3.6493 -1.1202 3.3979 44 1 1.9777 -1.5507 3.8326 45 1 4.6937 0.8159 4.2990 46 1 4.7520 2.3832 6.1807 47 1 1.9005 2.8162 8.3327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171704298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:40 Heat of formation + Delta-G solvation = -101.942490 kcal Electronic energy + Delta-G solvation = -28361.543030 eV Core-core repulsion = 24157.931348 eV Total energy + Delta-G solvation = -4203.611682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.91362 -40.89117 -39.63984 -38.14517 -37.76647 -36.82275 -35.58149 -34.77810 -33.11959 -32.35510 -31.73021 -29.07605 -28.80039 -25.95893 -25.79878 -24.60386 -23.69714 -22.25706 -21.96265 -21.58420 -20.78205 -19.14769 -19.09790 -18.73082 -18.46472 -17.25578 -16.94354 -16.82950 -16.66053 -16.33107 -16.02846 -15.61876 -15.46416 -15.28452 -15.26922 -14.84749 -14.80451 -14.61331 -14.28407 -14.22666 -14.08120 -13.41525 -13.17789 -13.09379 -13.01915 -12.87062 -12.82083 -12.44690 -12.27270 -12.18449 -12.04617 -11.86696 -11.80055 -11.49696 -11.40274 -11.38767 -10.98337 -10.94487 -10.90257 -10.14647 -9.68679 -8.98724 -7.94462 -5.23459 -0.32407 0.66225 1.23157 1.47640 1.48392 1.51563 1.57817 2.13553 2.26026 2.57250 2.71229 3.27521 3.39028 3.53899 3.61579 3.73108 3.82426 4.03621 4.08022 4.11362 4.17199 4.20260 4.34960 4.41842 4.44371 4.58648 4.61599 4.65115 4.77409 4.88724 4.93383 4.99574 5.04895 5.12739 5.18029 5.25471 5.31862 5.32272 5.45243 5.48441 5.56393 5.57865 6.14808 6.28291 6.45081 6.65328 7.02210 7.14615 7.34025 8.12115 8.33990 9.28885 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.001812 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.777211 B =15448.535904 C =16851.105865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.249 4.249 10 H 0.076 0.924 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.275 1.275 15 H -0.296 1.296 16 H -0.278 1.278 17 N -0.704 5.704 18 C 0.500 3.500 19 O -0.579 6.579 20 C 0.074 3.926 21 N -0.512 5.512 22 C 0.216 3.784 23 C -0.286 4.286 24 C 0.456 3.544 25 O -0.441 6.441 26 N -0.658 5.658 27 C 0.650 3.350 28 O -0.591 6.591 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.023 0.977 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.419 0.581 43 H 0.184 0.816 44 H 0.132 0.868 45 H 0.234 0.766 46 H 0.199 0.801 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 7.929 25.949 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.381 4.381 10 H 0.094 0.906 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.204 1.204 17 N -0.357 5.357 18 C 0.285 3.715 19 O -0.459 6.459 20 C -0.051 4.051 21 N -0.227 5.227 22 C 0.083 3.917 23 C -0.312 4.312 24 C 0.257 3.743 25 O -0.237 6.237 26 N -0.418 5.418 27 C 0.352 3.648 28 O -0.470 6.470 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.257 0.743 43 H 0.201 0.799 44 H 0.150 0.850 45 H 0.251 0.749 46 H 0.216 0.784 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -8.808 8.484 26.134 28.854 hybrid contribution 0.463 -0.550 -0.833 1.100 sum -8.345 7.934 25.301 27.798 Atomic orbital electron populations 1.22133 0.95283 1.02711 1.01707 1.20923 0.93742 0.96921 0.84076 0.91132 1.21837 0.95243 1.01916 0.96431 1.21413 0.95204 1.00272 0.97144 1.21615 0.93880 1.00939 0.98797 1.20873 0.94094 0.94271 0.88546 1.42654 1.04469 1.65356 1.26828 1.19638 0.85386 1.27639 1.05414 0.90624 1.25616 1.02191 1.01315 0.97908 1.69813 1.34754 1.41932 1.15565 0.85186 0.79912 0.77611 0.76907 1.20118 1.22192 1.20444 1.45928 1.66130 1.14905 1.08719 1.21122 0.77555 0.87192 0.85608 1.90746 1.51630 1.18111 1.85382 1.22134 1.09111 0.91825 0.82037 1.45924 1.13699 1.36619 1.26447 1.23251 0.89751 0.84928 0.93800 1.21090 1.01409 1.09037 0.99620 1.20834 0.88619 0.81148 0.83689 1.84990 1.44496 1.55181 1.39064 1.69484 1.29553 1.18347 1.24375 1.17451 0.83212 0.83078 0.81044 1.90941 1.32286 1.49855 1.73955 0.91207 0.94896 0.90570 0.89702 0.89958 0.92486 0.90552 0.91906 0.92915 0.96892 0.95863 0.79540 0.94008 0.74342 0.79866 0.84966 0.74924 0.78410 0.71110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.08 16 2 C 0.15 2.41 2.57 44.99 0.12 2.53 16 3 H 0.07 1.46 7.58 -2.38 -0.02 1.44 16 4 C -0.12 -1.73 4.75 30.59 0.15 -1.59 16 5 C -0.10 -1.93 5.10 30.59 0.16 -1.77 16 6 C -0.11 -3.16 5.33 30.59 0.16 -3.00 16 7 C 0.15 5.55 6.26 86.38 0.54 6.09 16 8 N -0.75 -37.62 5.60 -343.44 -1.92 -39.55 16 9 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 10 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 12 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 13 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 N -0.70 -9.25 4.53 -442.56 -2.00 -11.26 16 18 C 0.50 8.68 7.86 87.66 0.69 9.37 16 19 O -0.58 -15.91 16.09 -3.01 -0.05 -15.95 16 20 C 0.07 0.77 5.83 85.63 0.50 1.27 16 21 N -0.51 -8.05 2.08 -661.77 -1.38 -9.43 16 22 C 0.22 1.61 10.40 83.40 0.87 2.48 16 23 C -0.29 -2.48 10.03 22.26 0.22 -2.26 16 24 C 0.46 6.95 7.91 85.21 0.67 7.63 16 25 O -0.44 -4.44 13.55 -84.32 -1.14 -5.58 16 26 N -0.66 -15.88 10.40 -438.81 -4.56 -20.45 16 27 C 0.65 17.27 8.34 179.58 1.50 18.77 16 28 O -0.59 -20.69 16.72 -5.24 -0.09 -20.78 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.21 7.75 -2.38 -0.02 1.19 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.37 19.87 7.67 -92.71 -0.71 19.16 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.42 2.90 8.60 -92.70 -0.80 2.10 16 43 H 0.18 -0.25 8.03 -2.38 -0.02 -0.27 16 44 H 0.13 1.50 7.38 -2.38 -0.02 1.49 16 45 H 0.23 -0.77 8.06 -2.91 -0.02 -0.79 16 46 H 0.20 0.37 8.06 -2.91 -0.02 0.34 16 47 H 0.43 1.77 8.98 -74.06 -0.66 1.11 16 Total: -1.00 -93.03 401.94 -2.44 -95.47 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -1.16 Total: 18.29 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.56 Total: 20.52 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -9.59 Total: -139.25 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.28 Total: -42.31 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -93.03 -2.44 -95.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171704298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.471 kcal (2) G-P(sol) polarization free energy of solvation -93.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds