Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46716 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46957 * 119.99830 * 13 11 9 16 16 H 1.48495 * 109.47337 * 239.99911 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 N 1.46492 * 109.47441 * 180.02562 * 20 18 17 22 22 C 1.36165 * 119.85232 * 269.72527 * 21 20 18 23 23 C 1.35546 * 119.25703 * 179.77205 * 22 21 20 24 24 C 1.40743 * 118.99810 * 0.49697 * 23 22 21 25 25 O 1.35155 * 120.16366 * 179.72893 * 24 23 22 26 26 N 1.32425 * 119.66938 * 359.74950 * 24 23 22 27 27 C 1.33266 * 120.73000 * 359.97438 * 26 24 23 28 28 O 1.21979 * 119.47918 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 37 37 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 38 38 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 39 39 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 40 40 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 41 41 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 1.07995 * 120.37116 * 0.02562 * 22 21 20 46 46 H 1.08002 * 120.50053 * 180.24553 * 23 22 21 47 47 H 0.96704 * 114.00214 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.4618 -1.9279 4.5323 15 1 9.9817 -2.0093 6.9083 16 1 10.1818 -4.0665 5.6401 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 7 2.6829 0.2088 -4.7131 22 6 1.5949 0.3547 -5.5187 23 6 1.6480 1.2315 -6.5511 24 6 2.8327 1.9598 -6.7675 25 8 2.9133 2.8362 -7.7933 26 7 3.8681 1.7818 -5.9614 27 6 3.8009 0.9207 -4.9466 28 8 4.7682 0.7750 -4.2179 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.6402 -0.8742 3.4508 37 1 3.7865 -2.3844 2.5200 38 1 6.0345 -1.6853 1.7404 39 1 5.8876 -0.1753 2.6713 40 1 5.4606 -2.3478 4.4251 41 1 7.3647 -3.6484 6.8354 42 1 2.2490 -1.6318 -1.1527 43 1 3.6381 -1.1236 -3.4054 44 1 1.9643 -1.5536 -3.8314 45 1 0.6984 -0.2186 -5.3347 46 1 0.7954 1.3661 -7.2003 47 1 3.7663 3.2869 -7.8595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171704299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = -65.425847 kcal Electronic energy + Delta-G solvation = -28426.163670 eV Core-core repulsion = 24224.135469 eV Total energy + Delta-G solvation = -4202.028201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25465 -40.18124 -39.02599 -37.24488 -36.92380 -35.31701 -34.92670 -33.33698 -32.01431 -31.52537 -30.37228 -28.46884 -27.47914 -25.30087 -24.30775 -23.80915 -22.35228 -21.33293 -20.87843 -20.66192 -20.17672 -18.59588 -18.07548 -17.89184 -16.98166 -16.50086 -16.17055 -16.10153 -15.58386 -15.18439 -14.96412 -14.78281 -14.64953 -14.39164 -14.06308 -14.02085 -13.81169 -13.58102 -13.17708 -13.13417 -12.97346 -12.66678 -12.49125 -12.37475 -11.80660 -11.51302 -11.29095 -11.15919 -11.02875 -10.81456 -10.76892 -10.71497 -10.40868 -10.31334 -10.24016 -10.20587 -9.94700 -9.65541 -9.40435 -9.02954 -8.83569 -6.87474 -5.73088 -3.01202 0.20526 1.27800 1.79897 2.14844 2.72642 2.77067 3.43436 3.46146 3.51894 3.54464 3.75476 3.96792 4.17708 4.21830 4.48499 4.52840 4.65634 4.66594 4.81411 4.86573 4.91845 4.95420 5.18964 5.32648 5.37900 5.52676 5.57806 5.59530 5.65308 5.74384 5.82096 5.88403 5.89004 6.05993 6.13026 6.31037 6.31736 6.39853 6.48543 6.59842 6.92536 6.96100 7.06219 7.38788 7.74991 7.76314 7.80495 8.46483 9.57306 10.16366 10.51063 11.50124 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.001888 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.150995 B =14829.936112 C =16409.496745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.151 3.849 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.071 0.929 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.715 5.715 18 C 0.502 3.498 19 O -0.529 6.529 20 C 0.074 3.926 21 N -0.511 5.511 22 C 0.211 3.789 23 C -0.285 4.285 24 C 0.459 3.541 25 O -0.448 6.448 26 N -0.612 5.612 27 C 0.660 3.340 28 O -0.524 6.524 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.403 0.597 43 H 0.136 0.864 44 H 0.126 0.874 45 H 0.182 0.818 46 H 0.165 0.835 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.514 5.025 -28.315 35.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.089 0.911 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.367 5.367 18 C 0.286 3.714 19 O -0.404 6.404 20 C -0.053 4.053 21 N -0.228 5.228 22 C 0.075 3.925 23 C -0.312 4.312 24 C 0.257 3.743 25 O -0.243 6.243 26 N -0.368 5.368 27 C 0.362 3.638 28 O -0.397 6.397 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.238 0.762 43 H 0.154 0.846 44 H 0.144 0.856 45 H 0.199 0.801 46 H 0.183 0.817 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -20.613 6.040 -27.980 35.274 hybrid contribution 0.713 -0.763 0.593 1.201 sum -19.900 5.277 -27.387 34.262 Atomic orbital electron populations 1.22165 0.95172 1.02106 1.02556 1.21104 0.93754 0.97851 0.83613 0.89270 1.21942 0.97016 1.00900 0.96559 1.21532 0.93800 1.01264 0.98753 1.21718 0.97315 1.00195 0.97026 1.20658 0.90976 0.95405 0.90583 1.42393 1.05349 1.64949 1.25196 1.19319 0.83953 1.28157 1.05374 0.91142 1.24751 0.97761 1.01048 0.97720 1.69674 1.32659 1.40963 1.15149 0.86100 0.85081 0.77196 0.77773 1.20526 1.21873 1.21884 1.46005 1.67060 1.14319 1.09333 1.20591 0.78099 0.87740 0.84936 1.90766 1.49357 1.15436 1.84882 1.21849 1.07234 0.91547 0.84691 1.46032 1.13902 1.37285 1.25580 1.22303 0.90555 0.92853 0.86766 1.20597 1.00390 1.04858 1.05342 1.20435 0.88889 0.82432 0.82581 1.84979 1.42821 1.52249 1.44269 1.69677 1.29377 1.26858 1.10908 1.17304 0.82274 0.79875 0.84384 1.91056 1.34545 1.66622 1.47497 0.91343 0.92415 0.92360 0.90075 0.91217 0.92064 0.91953 0.92068 0.92124 0.96542 0.96522 0.78378 0.93637 0.76182 0.84604 0.85641 0.80110 0.81724 0.72474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.16 0.35 -0.84 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.07 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 4 C -0.13 -1.15 4.75 -26.73 -0.13 -1.28 16 5 C -0.12 -1.43 5.10 -26.73 -0.14 -1.57 16 6 C -0.12 -1.99 5.33 -26.73 -0.14 -2.13 16 7 C 0.15 3.20 6.26 -4.04 -0.03 3.17 16 8 N -0.73 -19.49 5.60 -59.91 -0.34 -19.83 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 11 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 12 N -0.94 -28.98 13.06 55.49 0.72 -28.26 16 13 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 N -0.71 -5.41 4.53 -53.81 -0.24 -5.65 16 18 C 0.50 4.69 7.86 -10.98 -0.09 4.61 16 19 O -0.53 -7.27 16.10 5.55 0.09 -7.18 16 20 C 0.07 0.46 5.83 -5.20 -0.03 0.43 16 21 N -0.51 -4.36 2.08 -123.16 -0.26 -4.62 16 22 C 0.21 0.98 10.40 -16.59 -0.17 0.80 16 23 C -0.29 -1.47 10.03 -39.60 -0.40 -1.87 16 24 C 0.46 3.67 7.91 -16.35 -0.13 3.54 16 25 O -0.45 -2.48 13.55 -17.16 -0.23 -2.71 16 26 N -0.61 -7.41 10.40 -16.72 -0.17 -7.58 16 27 C 0.66 8.88 8.34 -88.43 -0.74 8.14 16 28 O -0.52 -9.26 16.72 4.94 0.08 -9.18 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.74 7.75 -51.94 -0.40 0.34 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.40 2.01 8.60 -40.82 -0.35 1.66 16 43 H 0.14 0.95 7.38 -51.93 -0.38 0.57 16 44 H 0.13 0.12 8.03 -51.93 -0.42 -0.30 16 45 H 0.18 -0.04 8.06 -52.49 -0.42 -0.46 16 46 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 47 H 0.42 1.01 8.98 45.56 0.41 1.42 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -42.48 401.94 -7.84 -50.32 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.47 Total: 4.17 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.05 Total: 6.40 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.29 Total: -65.94 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -42.48 -7.84 -50.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171704299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.108 kcal (2) G-P(sol) polarization free energy of solvation -42.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds