Wall clock time and date at job start Tue Mar 31 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.52989 * 109.47113 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47113 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47010 * 180.02562 * 7 6 5 9 9 C 1.46899 * 110.99627 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47135 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00238 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00083 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00011 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00031 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99847 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00033 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99858 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47465 * 89.99519 * 17 15 13 19 19 H 1.48495 * 109.47204 * 209.99974 * 17 15 13 20 20 H 1.48507 * 109.46839 * 330.00043 * 17 15 13 21 21 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 22 22 C 1.34781 * 119.99732 * 274.99921 * 21 2 1 23 23 O 1.21686 * 119.99747 * 359.97438 * 22 21 2 24 24 C 1.46714 * 120.00020 * 179.97438 * 22 21 2 25 25 C 1.36348 * 126.64824 * 179.97438 * 24 22 21 26 26 N 1.33681 * 107.45444 * 180.02562 * 25 24 22 27 27 C 1.30612 * 109.00204 * 0.02562 * 26 25 24 28 28 O 1.33670 * 109.14909 * 359.72948 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 35 35 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 36 36 H 1.08999 * 109.47464 * 300.00192 * 6 5 4 37 37 H 1.09001 * 109.47240 * 60.00521 * 6 5 4 38 38 H 1.08997 * 109.46604 * 300.00391 * 7 6 5 39 39 H 1.08993 * 109.46833 * 59.99859 * 7 6 5 40 40 H 1.00898 * 110.99838 * 56.04761 * 8 7 6 41 41 H 1.09000 * 109.47399 * 300.00148 * 9 8 7 42 42 H 1.09007 * 109.47322 * 59.99973 * 9 8 7 43 43 H 0.97004 * 120.00087 * 0.02562 * 12 10 9 44 44 H 0.96998 * 119.99903 * 179.97438 * 16 15 13 45 45 H 0.96998 * 120.00364 * 94.99433 * 21 2 1 46 46 H 1.08003 * 126.26761 * 0.03845 * 25 24 22 47 47 H 1.07995 * 125.43104 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3351 -2.5626 7 6 5.5996 -1.2266 -2.6275 8 7 6.0892 -1.9192 -3.8270 9 6 7.5526 -1.8351 -3.9229 10 6 8.0170 -2.5555 -5.1623 11 8 7.2085 -3.0864 -5.8941 12 7 9.3308 -2.6091 -5.4583 13 6 9.7533 -3.2641 -6.5862 14 1 9.0334 -3.7374 -7.2373 15 6 11.1078 -3.3197 -6.8910 16 7 11.9838 -2.7442 -6.0984 17 14 11.6835 -4.2128 -8.4274 18 1 11.7197 -3.2626 -9.5680 19 1 13.0432 -4.7643 -8.1992 20 1 10.7450 -5.3215 -8.7364 21 7 2.0184 -0.6907 1.1961 22 6 2.1472 -0.0183 2.3571 23 8 1.8582 1.1625 2.4116 24 6 2.6357 -0.7101 3.5552 25 6 2.8175 -0.1658 4.7920 26 7 3.2743 -1.1337 5.5929 27 6 3.3802 -2.2395 4.9059 28 8 2.9890 -2.0133 3.6478 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.7864 -2.3854 -2.5186 37 1 3.6402 -0.8760 -3.4506 38 1 5.8875 -0.1763 -2.6718 39 1 6.0346 -1.6854 -1.7396 40 1 5.6510 -1.5542 -4.6594 41 1 7.8538 -0.7889 -3.9760 42 1 8.0016 -2.2982 -3.0441 43 1 9.9775 -2.1842 -4.8733 44 1 12.9294 -2.7834 -6.3110 45 1 2.2491 -1.6318 1.1526 46 1 2.6271 0.8595 5.0731 47 1 3.7240 -3.1870 5.2936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171953511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:04 Heat of formation + Delta-G solvation = -64.930009 kcal Electronic energy + Delta-G solvation = -27512.968182 eV Core-core repulsion = 23310.961482 eV Total energy + Delta-G solvation = -4202.006700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.94589 -40.24556 -38.33107 -37.39902 -35.99057 -35.43871 -34.00642 -33.42666 -31.91261 -31.21034 -30.48018 -28.70011 -26.24120 -24.99864 -24.18663 -23.28887 -22.70018 -21.54674 -21.27627 -21.04084 -19.20976 -19.03753 -17.87919 -17.42607 -17.35380 -16.87757 -16.17410 -15.83612 -15.34309 -15.09350 -14.86971 -14.78377 -14.52198 -14.46245 -14.18267 -13.96437 -13.75642 -13.48605 -13.25961 -13.20378 -12.64589 -12.39151 -12.20180 -12.05456 -11.75894 -11.63905 -11.52482 -11.44317 -11.37978 -11.18114 -11.04629 -10.89902 -10.74271 -10.69266 -10.39663 -10.21928 -9.80926 -9.51354 -9.51236 -8.46006 -8.05003 -7.95938 -6.41927 -3.82789 0.29294 1.90169 1.91814 2.59403 2.65288 3.17559 3.26134 3.32218 3.61790 3.90831 4.00813 4.17584 4.28514 4.39759 4.49111 4.55605 4.62678 4.90866 4.95323 4.99220 5.03500 5.10358 5.14809 5.21845 5.25941 5.30035 5.43932 5.46644 5.58632 5.59819 5.63841 5.71915 5.75439 5.81265 5.84621 5.94588 5.99311 6.13908 6.19558 6.28670 6.78299 7.04015 7.23857 7.51246 7.54965 7.68016 8.06288 8.61246 9.17656 9.54258 10.05789 10.75858 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.001530 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.814194 B =18301.425634 C =19547.562866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.710 5.710 22 C 0.610 3.390 23 O -0.515 6.515 24 C -0.112 4.112 25 C 0.054 3.946 26 N -0.495 5.495 27 C 0.204 3.796 28 O -0.191 6.191 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.348 0.652 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.406 0.594 46 H 0.197 0.803 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 4.844 20.835 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.361 5.361 22 C 0.395 3.605 23 O -0.393 6.393 24 C -0.168 4.168 25 C -0.089 4.089 26 N -0.223 5.223 27 C -0.021 4.021 28 O -0.077 6.077 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.241 0.759 46 H 0.214 0.786 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -20.874 4.718 21.202 30.125 hybrid contribution 1.035 0.124 -1.157 1.558 sum -19.839 4.842 20.045 28.615 Atomic orbital electron populations 1.22193 0.94807 1.02431 1.02884 1.21160 0.94208 0.97756 0.83254 0.88861 1.21936 0.96461 1.01313 0.96810 1.21570 0.94507 1.01086 0.98501 1.21549 0.94972 1.01479 0.97449 1.21973 0.95007 0.95832 0.94291 1.60085 1.04840 1.60030 1.05327 1.21669 0.89029 0.98690 0.98849 1.19827 0.83403 0.86116 0.88041 1.90516 1.53417 1.50463 1.52389 1.41871 1.05455 1.48905 1.23853 1.19711 0.92008 1.30223 1.00988 0.87912 1.25269 0.95617 0.97840 0.99265 1.69611 1.02529 1.44311 1.37886 0.85847 0.77896 0.79521 0.80959 1.20426 1.20919 1.19404 1.46035 1.66289 1.14427 1.09325 1.16334 0.77679 0.85612 0.80893 1.90913 1.50527 1.14014 1.83802 1.23228 1.12091 0.82445 0.99010 1.23649 0.96906 1.00602 0.87752 1.70479 1.18153 0.99649 1.34049 1.28502 0.95875 1.00451 0.77232 1.84511 1.62491 1.27078 1.33604 0.92034 0.91107 0.92252 0.90975 0.89779 0.91833 0.91935 0.90898 0.91922 0.95752 0.91354 0.83258 0.93957 0.89704 0.77458 0.91874 0.75858 0.78584 0.72648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.62 16 2 C 0.14 0.90 2.57 -67.93 -0.17 0.72 16 3 H 0.09 0.73 7.58 -51.93 -0.39 0.34 16 4 C -0.13 -0.73 4.75 -26.73 -0.13 -0.86 16 5 C -0.12 -0.87 5.10 -26.73 -0.14 -1.01 16 6 C -0.12 -1.11 5.47 -26.73 -0.15 -1.26 16 7 C 0.06 0.71 5.69 -3.82 -0.02 0.68 16 8 N -0.67 -10.92 6.13 -115.05 -0.70 -11.62 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 12 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 13 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 14 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 17 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.71 -4.73 4.53 -55.10 -0.25 -4.98 16 22 C 0.61 5.41 7.75 -12.84 -0.10 5.31 16 23 O -0.52 -6.03 16.55 5.20 0.09 -5.94 16 24 C -0.11 -0.91 7.18 -36.84 -0.26 -1.17 16 25 C 0.05 0.44 11.66 -17.43 -0.20 0.23 16 26 N -0.50 -3.96 11.26 -14.67 -0.17 -4.13 16 27 C 0.20 1.04 13.21 52.24 0.69 1.73 16 28 O -0.19 -1.24 10.57 4.41 0.05 -1.20 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.41 2.10 8.40 -40.82 -0.34 1.76 16 46 H 0.20 1.33 8.06 -52.48 -0.42 0.90 16 47 H 0.26 -0.01 8.06 -52.49 -0.42 -0.43 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -34.98 405.40 -6.86 -41.83 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.22 Total: 11.20 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.49 Total: 7.02 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.45 Total: -59.16 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.22 Total: -23.08 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.98 -6.86 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171953511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.096 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds