Wall clock time and date at job start Tue Mar 31 2020 22:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.52989 * 109.47113 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47113 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47010 * 180.02562 * 7 6 5 9 9 C 1.46899 * 110.99627 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47135 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00238 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00083 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00011 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00031 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99847 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00033 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99858 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47465 * 89.99519 * 17 15 13 19 19 H 1.48495 * 109.47204 * 209.99974 * 17 15 13 20 20 H 1.48507 * 109.46839 * 330.00043 * 17 15 13 21 21 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 22 22 C 1.34781 * 119.99732 * 274.99921 * 21 2 1 23 23 O 1.21686 * 119.99747 * 359.97438 * 22 21 2 24 24 C 1.46714 * 120.00020 * 179.97438 * 22 21 2 25 25 C 1.36348 * 126.64824 * 179.97438 * 24 22 21 26 26 N 1.33681 * 107.45444 * 180.02562 * 25 24 22 27 27 C 1.30612 * 109.00204 * 0.02562 * 26 25 24 28 28 O 1.33670 * 109.14909 * 359.72948 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 35 35 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 36 36 H 1.08999 * 109.47464 * 300.00192 * 6 5 4 37 37 H 1.09001 * 109.47240 * 60.00521 * 6 5 4 38 38 H 1.08997 * 109.46604 * 300.00391 * 7 6 5 39 39 H 1.08993 * 109.46833 * 59.99859 * 7 6 5 40 40 H 1.00898 * 110.99838 * 56.04761 * 8 7 6 41 41 H 1.09000 * 109.47399 * 300.00148 * 9 8 7 42 42 H 1.09007 * 109.47322 * 59.99973 * 9 8 7 43 43 H 0.97004 * 120.00087 * 0.02562 * 12 10 9 44 44 H 0.96998 * 119.99903 * 179.97438 * 16 15 13 45 45 H 0.96998 * 120.00364 * 94.99433 * 21 2 1 46 46 H 1.08003 * 126.26761 * 0.03845 * 25 24 22 47 47 H 1.07995 * 125.43104 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3351 -2.5626 7 6 5.5996 -1.2266 -2.6275 8 7 6.0892 -1.9192 -3.8270 9 6 7.5526 -1.8351 -3.9229 10 6 8.0170 -2.5555 -5.1623 11 8 7.2085 -3.0864 -5.8941 12 7 9.3308 -2.6091 -5.4583 13 6 9.7533 -3.2641 -6.5862 14 1 9.0334 -3.7374 -7.2373 15 6 11.1078 -3.3197 -6.8910 16 7 11.9838 -2.7442 -6.0984 17 14 11.6835 -4.2128 -8.4274 18 1 11.7197 -3.2626 -9.5680 19 1 13.0432 -4.7643 -8.1992 20 1 10.7450 -5.3215 -8.7364 21 7 2.0184 -0.6907 1.1961 22 6 2.1472 -0.0183 2.3571 23 8 1.8582 1.1625 2.4116 24 6 2.6357 -0.7101 3.5552 25 6 2.8175 -0.1658 4.7920 26 7 3.2743 -1.1337 5.5929 27 6 3.3802 -2.2395 4.9059 28 8 2.9890 -2.0133 3.6478 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.7864 -2.3854 -2.5186 37 1 3.6402 -0.8760 -3.4506 38 1 5.8875 -0.1763 -2.6718 39 1 6.0346 -1.6854 -1.7396 40 1 5.6510 -1.5542 -4.6594 41 1 7.8538 -0.7889 -3.9760 42 1 8.0016 -2.2982 -3.0441 43 1 9.9775 -2.1842 -4.8733 44 1 12.9294 -2.7834 -6.3110 45 1 2.2491 -1.6318 1.1526 46 1 2.6271 0.8595 5.0731 47 1 3.7240 -3.1870 5.2936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171953511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:03 Heat of formation + Delta-G solvation = -93.999769 kcal Electronic energy + Delta-G solvation = -27514.228742 eV Core-core repulsion = 23310.961482 eV Total energy + Delta-G solvation = -4203.267259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.45083 -40.88838 -40.17152 -38.15621 -37.04108 -36.01811 -35.89347 -34.37891 -33.27694 -32.56949 -31.05504 -29.67781 -27.65051 -25.95518 -25.39030 -23.85399 -23.59151 -22.20018 -22.01292 -21.63880 -21.02961 -19.90940 -19.59099 -17.93214 -17.88649 -17.83797 -17.43960 -17.08568 -16.55261 -16.07919 -15.96225 -15.90336 -15.47535 -15.34257 -15.26363 -15.15941 -14.65921 -14.48577 -14.40326 -13.99075 -13.66763 -13.50515 -13.33886 -13.15334 -12.96538 -12.79182 -12.59628 -12.43102 -12.34850 -12.21434 -12.12134 -12.00444 -11.84653 -11.62217 -11.51856 -11.44603 -11.34981 -10.43355 -10.35738 -10.05169 -10.03024 -9.33316 -8.47597 -5.96711 -0.24862 1.37900 1.39135 1.40668 1.41789 1.54815 1.96637 2.03464 2.13254 2.28802 2.91636 3.19439 3.26992 3.48491 3.68115 3.81906 3.85682 3.98420 4.03351 4.27493 4.29441 4.31044 4.42481 4.45679 4.48877 4.54481 4.59788 4.61530 4.70930 4.77582 4.87379 4.90845 4.98290 5.02275 5.18347 5.19633 5.29792 5.31915 5.40016 5.46799 5.50190 5.89457 6.11037 6.23514 6.41487 6.53006 6.58771 6.91933 7.11218 7.54571 8.09684 8.69798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.001530 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.814194 B =18301.425634 C =19547.562866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.078 0.922 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.058 3.942 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.336 4.336 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.273 1.273 21 N -0.698 5.698 22 C 0.609 3.391 23 O -0.553 6.553 24 C -0.128 4.128 25 C 0.046 3.954 26 N -0.530 5.530 27 C 0.226 3.774 28 O -0.191 6.191 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.415 0.585 46 H 0.199 0.801 47 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 4.014 21.282 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.070 4.070 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.198 1.198 21 N -0.349 5.349 22 C 0.395 3.605 23 O -0.433 6.433 24 C -0.184 4.184 25 C -0.096 4.096 26 N -0.258 5.258 27 C 0.002 3.998 28 O -0.077 6.077 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.252 0.748 46 H 0.216 0.784 47 H 0.320 0.680 Dipole moment (debyes) X Y Z Total from point charges -20.808 3.888 21.672 30.295 hybrid contribution 1.008 0.340 -1.226 1.623 sum -19.800 4.228 20.446 28.774 Atomic orbital electron populations 1.22150 0.94210 1.02935 1.02568 1.21151 0.94619 0.97078 0.83371 0.90425 1.21866 0.95203 1.01950 0.96597 1.21490 0.95560 1.00520 0.97376 1.21480 0.93193 1.01483 0.98523 1.22093 0.96574 0.95871 0.92473 1.60116 1.03663 1.61388 1.06560 1.21535 0.90368 0.98995 0.95945 1.20888 0.82438 0.85107 0.89148 1.90482 1.54254 1.52019 1.54222 1.41946 1.06337 1.49179 1.23570 1.19688 0.92428 1.32108 1.02302 0.90258 1.26070 0.95141 0.98078 1.02045 1.69671 1.02963 1.44477 1.39004 0.84903 0.77613 0.78272 0.77391 1.19576 1.19505 1.19755 1.45995 1.65372 1.14746 1.08812 1.16444 0.77306 0.85262 0.81520 1.90886 1.52367 1.15551 1.84465 1.23012 1.13456 0.83187 0.98697 1.23809 0.96685 1.01061 0.88053 1.70499 1.19783 1.00609 1.34861 1.29616 0.92854 1.01118 0.76221 1.84517 1.62645 1.26187 1.34339 0.93795 0.89997 0.91288 0.89875 0.88923 0.92150 0.91834 0.91386 0.91831 0.94892 0.90854 0.83806 0.91822 0.87975 0.76976 0.91262 0.74807 0.78408 0.68019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 71.98 0.68 -1.05 16 2 C 0.14 1.68 2.57 44.99 0.12 1.79 16 3 H 0.08 1.21 7.58 -2.39 -0.02 1.19 16 4 C -0.12 -1.12 4.75 30.60 0.15 -0.98 16 5 C -0.11 -1.43 5.10 30.59 0.16 -1.27 16 6 C -0.11 -1.87 5.47 30.59 0.17 -1.70 16 7 C 0.06 1.30 5.69 86.31 0.49 1.79 16 8 N -0.68 -21.46 6.13 -517.92 -3.17 -24.64 16 9 C 0.06 2.22 6.17 85.56 0.53 2.75 16 10 C 0.44 21.00 7.82 87.66 0.69 21.68 16 11 O -0.62 -34.82 15.78 -3.06 -0.05 -34.87 16 12 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 13 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 16 N -0.92 -49.74 13.05 21.66 0.28 -49.45 16 17 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 N -0.70 -8.72 4.53 -446.45 -2.02 -10.74 16 22 C 0.61 10.84 7.75 86.46 0.67 11.51 16 23 O -0.55 -13.43 16.55 -4.30 -0.07 -13.50 16 24 C -0.13 -2.03 7.18 24.04 0.17 -1.85 16 25 C 0.05 0.76 11.66 83.97 0.98 1.74 16 26 N -0.53 -7.96 11.26 -315.10 -3.55 -11.51 16 27 C 0.23 1.79 13.21 130.42 1.72 3.52 16 28 O -0.19 -2.18 10.57 -7.14 -0.08 -2.25 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.82 7.75 -2.39 -0.02 0.80 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.34 11.25 8.43 -89.70 -0.76 10.50 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.41 3.66 8.40 -92.71 -0.78 2.88 16 46 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.31 -1.18 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -76.78 405.40 -1.71 -78.49 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -1.25 Total: 35.58 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 7.80 Total: 19.29 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -10.08 Total: -127.63 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.20 Total: -50.62 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.78 -1.71 -78.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171953511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.510 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds