Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47246 * 2 1 4 4 C 1.53006 * 109.47321 * 119.99741 * 2 1 3 5 5 C 1.52996 * 109.47371 * 184.99872 * 4 2 1 6 6 C 1.52998 * 109.47414 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47096 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.46849 * 179.97438 * 7 6 5 9 9 C 1.36937 * 119.99908 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99996 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00052 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99947 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99826 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47018 * 89.99841 * 13 11 9 15 15 H 1.48498 * 109.47027 * 209.99753 * 13 11 9 16 16 H 1.48497 * 109.47408 * 329.99900 * 13 11 9 17 17 N 1.46507 * 109.46982 * 239.99462 * 2 1 3 18 18 C 1.34773 * 119.99288 * 85.00240 * 17 2 1 19 19 O 1.21614 * 120.00769 * 5.10885 * 18 17 2 20 20 C 1.47314 * 119.99596 * 185.10581 * 18 17 2 21 21 C 1.38322 * 120.73519 * 354.75315 * 20 18 17 22 22 N 1.34947 * 119.01989 * 180.02562 * 21 20 18 23 23 C 1.46506 * 119.70767 * 179.97438 * 22 21 20 24 24 C 1.34453 * 120.59275 * 0.27180 * 22 21 20 25 25 O 1.21903 * 119.20434 * 179.70416 * 24 22 21 26 26 N 1.33332 * 121.59223 * 359.43461 * 24 22 21 27 27 C 1.32214 * 120.93033 * 0.56816 * 26 24 22 28 28 O 1.35011 * 120.33112 * 179.74362 * 27 26 24 29 29 H 1.08998 * 109.46948 * 299.99874 * 1 2 3 30 30 H 1.08995 * 109.46958 * 60.00356 * 1 2 3 31 31 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47038 * 305.00366 * 4 2 1 33 33 H 1.09004 * 109.46874 * 65.00301 * 4 2 1 34 34 H 1.09002 * 109.47207 * 300.00457 * 5 4 2 35 35 H 1.09008 * 109.47127 * 59.99716 * 5 4 2 36 36 H 1.09004 * 109.46751 * 299.99594 * 6 5 4 37 37 H 1.08994 * 109.47326 * 59.99798 * 6 5 4 38 38 H 1.09004 * 109.46682 * 299.99260 * 7 6 5 39 39 H 1.08994 * 109.47505 * 59.99531 * 7 6 5 40 40 H 0.96999 * 120.00176 * 359.97438 * 8 7 6 41 41 H 0.97002 * 119.99587 * 179.97438 * 12 11 9 42 42 H 0.96994 * 120.00220 * 264.99849 * 17 2 1 43 43 H 1.08004 * 120.49189 * 0.03500 * 21 20 18 44 44 H 1.09005 * 109.46567 * 89.99467 * 23 22 21 45 45 H 1.09002 * 109.46755 * 330.00367 * 23 22 21 46 46 H 1.09000 * 109.47548 * 209.99899 * 23 22 21 47 47 H 0.96703 * 114.00278 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5997 -1.2265 2.6273 8 7 6.0881 -1.9170 3.8235 9 6 7.4301 -1.9534 4.0932 10 1 8.1285 -1.4726 3.4243 11 6 7.8928 -2.6073 5.2269 12 7 9.1828 -2.6426 5.4858 13 14 6.6847 -3.4382 6.3843 14 1 6.4801 -4.8461 5.9588 15 1 7.2263 -3.4126 7.7668 16 1 5.3875 -2.7164 6.3474 17 7 2.0183 -0.6908 -1.1962 18 6 2.1470 -0.0184 -2.3571 19 8 1.9473 1.1808 -2.3908 20 6 2.5297 -0.7361 -3.5853 21 6 2.8652 -2.0774 -3.5449 22 7 3.2110 -2.7005 -4.6908 23 6 3.5697 -4.1208 -4.6653 24 6 3.2350 -2.0283 -5.8550 25 8 3.5563 -2.6149 -6.8741 26 7 2.9107 -0.7367 -5.9226 27 6 2.5627 -0.0658 -4.8377 28 8 2.2416 1.2430 -4.9193 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.6404 -0.8757 3.4506 37 1 3.7866 -2.3852 2.5186 38 1 6.0346 -1.6855 1.7394 39 1 5.8877 -0.1762 2.6715 40 1 5.4608 -2.3485 4.4246 41 1 9.5060 -3.0992 6.2783 42 1 2.2490 -1.6319 -1.1526 43 1 2.8506 -2.6180 -2.6100 44 1 2.6750 -4.7242 -4.8190 45 1 4.0122 -4.3664 -3.6999 46 1 4.2886 -4.3283 -5.4579 47 1 2.2949 1.6061 -5.8140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176548253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -61.364151 kcal Electronic energy + Delta-G solvation = -28819.941790 eV Core-core repulsion = 24618.089717 eV Total energy + Delta-G solvation = -4201.852073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.44384 -40.18399 -39.06483 -37.36182 -37.04709 -35.49456 -35.17058 -33.52716 -32.54164 -31.22306 -30.37209 -28.21426 -27.84697 -25.63974 -24.69948 -24.05466 -22.23100 -21.43002 -21.02640 -20.88687 -20.30106 -18.78528 -18.54012 -17.53583 -17.23067 -16.72052 -16.58641 -15.87554 -15.41766 -15.35949 -15.07410 -14.83940 -14.64478 -14.33446 -14.16552 -14.01638 -13.79615 -13.64630 -13.40624 -13.24802 -13.12687 -12.78246 -12.52535 -12.17011 -11.99599 -11.73976 -11.54255 -11.46177 -11.25136 -10.94287 -10.91669 -10.63435 -10.60708 -10.49201 -10.40670 -10.17037 -10.14228 -9.62350 -9.45540 -9.17790 -8.92588 -7.26098 -5.79745 -3.15338 -0.07929 0.72606 1.71429 2.57088 2.63489 2.70891 3.26470 3.33559 3.35834 3.41815 3.46636 3.69333 4.10347 4.34923 4.41485 4.51931 4.55813 4.59991 4.67043 4.76029 4.82386 4.99506 5.10801 5.22799 5.26104 5.28288 5.41318 5.47894 5.50396 5.58845 5.61921 5.74262 5.78835 5.94395 5.99604 6.04262 6.10999 6.21230 6.28895 6.64084 6.71545 6.75501 7.06309 7.18925 7.57081 7.85777 7.97044 8.39517 9.18829 9.91158 10.11125 11.38795 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.002229 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.013449 B =12559.385067 C =13913.923237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.724 5.724 18 C 0.581 3.419 19 O -0.512 6.512 20 C -0.298 4.298 21 C 0.246 3.754 22 N -0.517 5.517 23 C 0.054 3.946 24 C 0.654 3.346 25 O -0.523 6.523 26 N -0.614 5.614 27 C 0.495 3.505 28 O -0.413 6.413 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.393 0.607 43 H 0.188 0.812 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 0.478 -18.906 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.377 5.377 18 C 0.366 3.634 19 O -0.387 6.387 20 C -0.311 4.311 21 C 0.104 3.896 22 N -0.230 5.230 23 C -0.088 4.088 24 C 0.356 3.644 25 O -0.396 6.396 26 N -0.373 5.373 27 C 0.293 3.707 28 O -0.204 6.204 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.228 0.772 43 H 0.205 0.795 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -21.102 1.237 -19.931 29.053 hybrid contribution -0.543 -1.347 1.175 1.868 sum -21.645 -0.109 -18.756 28.641 Atomic orbital electron populations 1.22187 0.95219 1.02109 1.02685 1.21071 0.93731 0.98017 0.83282 0.88811 1.21952 0.96828 1.00881 0.96886 1.21521 0.93946 1.01436 0.98382 1.21785 0.97307 1.00211 0.97480 1.20627 0.90739 0.95750 0.89974 1.42738 1.05249 1.66319 1.26073 1.19082 0.82257 1.29333 1.06834 0.89293 1.24700 0.95639 1.00759 0.98248 1.69706 1.11737 1.48250 1.28581 0.86511 0.80924 0.79730 0.81136 1.21116 1.21705 1.20346 1.45958 1.68327 1.13705 1.09715 1.17217 0.77417 0.86775 0.81993 1.90872 1.49501 1.13303 1.84981 1.19734 1.22851 0.93567 0.94948 1.22879 0.83535 0.91650 0.91563 1.46313 1.54103 1.14086 1.08466 1.22411 1.03681 0.76742 1.05923 1.17467 0.80079 0.84148 0.82739 1.91013 1.50390 1.66540 1.31658 1.69753 1.31581 1.07975 1.27962 1.20184 0.78201 0.84519 0.87827 1.85264 1.79816 1.17928 1.37368 0.91363 0.92178 0.92494 0.90048 0.91381 0.92071 0.91599 0.92047 0.92202 0.95833 0.95718 0.80740 0.93046 0.77193 0.79512 0.89567 0.88579 0.87767 0.72952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.14 1.02 2.62 -67.93 -0.18 0.85 16 3 H 0.09 0.87 7.51 -51.93 -0.39 0.48 16 4 C -0.13 -0.89 4.75 -26.73 -0.13 -1.01 16 5 C -0.11 -1.10 5.10 -26.73 -0.14 -1.24 16 6 C -0.13 -1.70 5.33 -26.73 -0.14 -1.84 16 7 C 0.16 2.87 6.26 -4.04 -0.03 2.84 16 8 N -0.76 -17.78 5.41 -59.91 -0.32 -18.10 16 9 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 11 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 12 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 13 Si 0.89 21.76 27.74 -169.99 -4.71 17.04 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 17 N -0.72 -4.48 4.48 -54.91 -0.25 -4.73 16 18 C 0.58 5.18 7.72 -12.57 -0.10 5.08 16 19 O -0.51 -6.61 14.94 -15.90 -0.24 -6.85 16 20 C -0.30 -2.25 5.90 -104.70 -0.62 -2.87 16 21 C 0.25 1.09 9.90 -16.15 -0.16 0.93 16 22 N -0.52 -3.38 2.96 -128.86 -0.38 -3.76 16 23 C 0.05 0.18 10.35 59.85 0.62 0.80 16 24 C 0.65 7.37 8.32 -88.49 -0.74 6.63 16 25 O -0.52 -7.64 16.66 5.01 0.08 -7.55 16 26 N -0.61 -6.82 10.38 -16.47 -0.17 -6.99 16 27 C 0.50 4.60 7.93 -15.91 -0.13 4.48 16 28 O -0.41 -3.50 11.78 -37.91 -0.45 -3.95 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.36 8.14 5.53 -40.82 -0.23 7.92 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.39 1.23 6.71 -40.82 -0.27 0.95 16 43 H 0.19 -0.06 6.48 -52.48 -0.34 -0.40 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.10 0.04 8.02 -51.93 -0.42 -0.38 16 46 H 0.10 0.53 7.35 -51.93 -0.38 0.14 16 47 H 0.41 1.70 8.98 45.56 0.41 2.11 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -40.87 392.94 -7.63 -48.50 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.26 Total: 2.18 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.63 Total: 6.80 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.35 Total: -62.10 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.60 Total: -18.35 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.87 -7.63 -48.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176548253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.867 kcal (2) G-P(sol) polarization free energy of solvation -40.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds