Wall clock time and date at job start Tue Mar 31 2020 21:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99859 * 2 1 4 4 C 1.54328 * 109.88293 * 121.09469 * 2 1 3 5 5 H 1.09000 * 110.72202 * 215.76414 * 4 2 1 6 6 N 1.46893 * 110.72144 * 338.86609 * 4 2 1 7 7 C 1.46903 * 111.00304 * 202.55674 * 6 4 2 8 8 C 1.50696 * 109.47177 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.37090 * 119.99714 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00232 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99992 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55162 * 103.09747 * 97.31673 * 4 2 1 20 20 C 1.54904 * 101.58275 * 35.41248 * 19 4 2 21 21 N 1.47318 * 109.85273 * 238.70106 * 2 1 3 22 22 C 1.34782 * 125.61334 * 59.57724 * 21 2 1 23 23 O 1.21283 * 120.00035 * 359.80922 * 22 21 2 24 24 C 1.50700 * 119.99702 * 179.79829 * 22 21 2 25 25 H 1.08996 * 110.21795 * 320.47867 * 24 22 21 26 26 C 1.54477 * 110.24400 * 82.50678 * 24 22 21 27 27 C 1.54624 * 101.76558 * 144.41534 * 26 24 22 28 28 C 1.51284 * 104.19427 * 335.19760 * 27 26 24 29 29 O 1.21288 * 124.93629 * 196.23546 * 28 27 26 30 30 N 1.34411 * 110.11677 * 16.25418 * 28 27 26 31 31 H 1.08999 * 109.47453 * 298.89841 * 1 2 3 32 32 H 1.08998 * 109.47033 * 58.90324 * 1 2 3 33 33 H 1.09008 * 109.46751 * 178.90415 * 1 2 3 34 34 H 1.00899 * 111.00478 * 78.59853 * 6 4 2 35 35 H 1.09005 * 109.46883 * 59.99694 * 7 6 4 36 36 H 1.09002 * 109.46817 * 300.00144 * 7 6 4 37 37 H 0.96999 * 120.00048 * 0.02562 * 10 8 7 38 38 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 39 39 H 1.09003 * 110.99994 * 153.49273 * 19 4 2 40 40 H 1.09002 * 111.00037 * 277.29851 * 19 4 2 41 41 H 1.09008 * 110.36534 * 81.82925 * 20 19 4 42 42 H 1.08995 * 110.36559 * 204.03864 * 20 19 4 43 43 H 1.09003 * 110.96362 * 262.53468 * 26 24 22 44 44 H 1.09000 * 110.97526 * 26.29079 * 26 24 22 45 45 H 1.09004 * 110.48179 * 216.52212 * 27 26 24 46 46 H 1.09003 * 110.49142 * 93.87836 * 27 26 24 47 47 H 0.96999 * 124.34828 * 180.38543 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 1 2.9640 -0.2813 1.6201 6 7 1.0265 -0.8028 2.2903 7 6 1.6322 -1.0087 3.6127 8 6 0.5491 -1.0573 4.6593 9 8 -0.6132 -0.9331 4.3355 10 7 0.8719 -1.2397 5.9552 11 6 -0.1135 -1.2844 6.9072 12 1 -1.1484 -1.1739 6.6189 13 6 0.2192 -1.4720 8.2432 14 7 -0.7253 -1.5144 9.1560 15 14 2.0092 -1.6639 8.7419 16 1 2.3821 -3.1008 8.7046 17 1 2.8697 -0.9046 7.7994 18 1 2.1987 -1.1388 10.1180 19 6 2.3554 -2.1701 0.6957 20 6 2.8598 -1.8525 -0.7341 21 7 2.0303 -0.7198 -1.1840 22 6 1.7750 -0.3939 -2.4666 23 8 1.0760 0.5640 -2.7213 24 6 2.3583 -1.2195 -3.5843 25 1 3.3796 -1.5133 -3.3421 26 6 1.4861 -2.4692 -3.8370 27 6 1.5931 -2.6232 -5.3718 28 6 1.9115 -1.2283 -5.8634 29 8 1.8033 -0.8552 -7.0123 30 7 2.3320 -0.4629 -4.8416 31 1 -0.3634 0.4966 0.8997 32 1 -0.3633 0.5308 -0.8800 33 1 -0.3633 -1.0276 -0.0197 34 1 0.3432 -1.5178 2.0903 35 1 2.3129 -0.1862 3.8326 36 1 2.1846 -1.9484 3.6170 37 1 1.8013 -1.3394 6.2141 38 1 -0.4930 -1.6457 10.0885 39 1 3.1317 -2.6591 1.2843 40 1 1.4503 -2.7767 0.6657 41 1 3.9115 -1.5667 -0.7107 42 1 2.7157 -2.7132 -1.3870 43 1 1.8969 -3.3410 -3.3278 44 1 0.4541 -2.2926 -3.5337 45 1 0.6461 -2.9674 -5.7876 46 1 2.3973 -3.3118 -5.6311 47 1 2.5858 0.4696 -4.9247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178351240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:41 Heat of formation + Delta-G solvation = -85.906329 kcal Electronic energy + Delta-G solvation = -29344.062384 eV Core-core repulsion = 25141.146082 eV Total energy + Delta-G solvation = -4202.916301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36862 -40.10894 -38.69404 -37.99614 -36.51840 -34.98150 -33.93184 -31.90680 -31.74343 -31.50058 -30.99270 -28.53720 -26.88312 -25.34617 -24.00121 -23.52603 -22.75410 -21.08970 -20.69081 -19.52588 -19.33938 -18.53240 -18.06180 -17.72479 -16.51530 -16.32367 -16.09833 -15.77350 -15.55683 -14.98848 -14.87905 -14.85492 -14.21030 -14.08970 -13.91542 -13.86692 -13.43874 -13.37891 -13.21284 -13.03589 -12.92876 -12.76482 -12.59407 -12.42053 -12.25672 -12.07174 -11.74207 -11.71066 -11.60067 -11.22548 -11.05186 -10.97229 -10.65062 -10.40204 -10.27175 -10.02807 -9.63140 -9.53465 -9.03450 -8.68325 -8.28329 -8.22353 -6.36150 -3.87950 2.08595 2.10055 2.40103 2.95786 2.97267 3.01125 3.10549 3.66483 3.71117 3.76936 3.86099 3.98596 4.04921 4.15135 4.30049 4.38095 4.47006 4.63248 4.78189 4.79414 4.87227 4.93987 5.00511 5.13055 5.16301 5.20935 5.32339 5.33422 5.40257 5.46152 5.54419 5.63379 5.66226 5.73760 5.85570 5.99833 6.20506 6.27404 6.47639 6.53832 6.93393 7.09916 7.39517 7.52214 7.69173 7.81254 8.08806 8.53646 8.89534 9.36574 9.75939 10.76840 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.001911 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.012249 B =14650.321190 C =14880.618733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.080 0.920 4 C 0.082 3.918 5 H 0.095 0.905 6 N -0.653 5.653 7 C 0.048 3.952 8 C 0.448 3.552 9 O -0.564 6.564 10 N -0.589 5.589 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.276 1.276 19 C -0.167 4.167 20 C 0.098 3.902 21 N -0.611 5.611 22 C 0.521 3.479 23 O -0.522 6.522 24 C 0.117 3.883 25 H 0.104 0.896 26 C -0.122 4.122 27 C -0.154 4.154 28 C 0.523 3.477 29 O -0.530 6.530 30 N -0.710 5.710 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.356 0.644 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -5.403 -22.492 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.030 4.030 5 H 0.113 0.887 6 N -0.286 5.286 7 C -0.085 4.085 8 C 0.234 3.766 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.435 4.435 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.202 1.202 19 C -0.207 4.207 20 C -0.026 4.026 21 N -0.347 5.347 22 C 0.307 3.693 23 O -0.397 6.397 24 C 0.007 3.993 25 H 0.122 0.878 26 C -0.160 4.160 27 C -0.195 4.195 28 C 0.309 3.691 29 O -0.406 6.406 30 N -0.366 5.366 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.178 0.822 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 12.738 -4.029 -23.215 26.785 hybrid contribution 1.920 -0.739 0.808 2.210 sum 14.658 -4.769 -22.406 27.196 Atomic orbital electron populations 1.21953 0.93380 1.02194 1.03621 1.21611 0.96111 0.95500 0.82572 0.90207 1.22629 0.95084 0.93894 0.91394 0.88723 1.60030 1.13736 1.55189 0.99599 1.21746 0.96559 1.00698 0.89470 1.19674 0.89806 0.84134 0.83020 1.90579 1.19948 1.53515 1.80551 1.42201 1.08424 1.65747 1.06492 1.19428 0.91015 1.47089 0.85937 0.86263 1.25054 0.97981 0.97627 0.95520 1.69622 1.32174 1.48522 1.01642 0.86666 0.84558 0.78897 0.79205 1.19670 1.19492 1.20157 1.23594 1.02815 0.98923 0.95359 1.22349 0.95016 0.89083 0.96117 1.48681 1.50393 1.30570 1.05019 1.20253 0.81399 0.85320 0.82336 1.90765 1.37596 1.28513 1.82851 1.21578 1.01172 0.92256 0.84265 0.87800 1.22618 1.01324 0.96032 0.96003 1.22379 1.05561 0.95851 0.95664 1.20831 0.75388 0.88193 0.84641 1.90784 1.53256 1.78107 1.18470 1.45960 1.68110 1.14884 1.07648 0.89213 0.92144 0.93153 0.82246 0.89354 0.93562 0.79708 0.91568 0.89476 0.89949 0.90815 0.90369 0.88077 0.89103 0.87378 0.87216 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.22 37.16 0.31 -1.54 16 2 C 0.14 1.44 3.50 -66.79 -0.23 1.21 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.73 3.11 -65.88 -0.21 0.52 16 5 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 6 N -0.65 -8.36 4.44 -106.05 -0.47 -8.83 16 7 C 0.05 0.68 6.04 -4.98 -0.03 0.65 16 8 C 0.45 9.42 7.82 -10.98 -0.09 9.34 16 9 O -0.56 -14.33 15.78 5.55 0.09 -14.24 16 10 N -0.59 -13.26 5.09 -10.96 -0.06 -13.32 16 11 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 12 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.14 13.96 55.50 0.77 -24.36 16 15 Si 0.88 18.61 27.74 -169.99 -4.71 13.90 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 C -0.17 -1.02 6.67 -24.58 -0.16 -1.19 16 20 C 0.10 0.45 6.40 -2.54 -0.02 0.43 16 21 N -0.61 -4.80 3.09 -162.80 -0.50 -5.30 16 22 C 0.52 4.76 6.82 -10.98 -0.07 4.68 16 23 O -0.52 -7.05 15.49 5.55 0.09 -6.96 16 24 C 0.12 0.68 3.13 -68.16 -0.21 0.47 16 25 H 0.10 0.33 7.70 -51.93 -0.40 -0.07 16 26 C -0.12 -0.51 6.33 -25.10 -0.16 -0.67 16 27 C -0.15 -0.77 6.86 -26.74 -0.18 -0.96 16 28 C 0.52 4.90 8.43 -10.86 -0.09 4.80 16 29 O -0.53 -7.31 18.03 5.55 0.10 -7.21 16 30 N -0.71 -5.70 5.47 -53.88 -0.29 -6.00 16 31 H 0.09 1.25 7.40 -51.93 -0.38 0.86 16 32 H 0.06 0.82 6.77 -51.93 -0.35 0.46 16 33 H 0.05 0.58 7.93 -51.92 -0.41 0.17 16 34 H 0.36 4.84 7.36 -39.29 -0.29 4.55 16 35 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.37 7.23 5.76 -40.82 -0.24 6.99 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 41 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 42 H 0.08 0.19 6.75 -51.93 -0.35 -0.16 16 43 H 0.10 0.14 7.51 -51.93 -0.39 -0.25 16 44 H 0.09 0.51 7.91 -51.93 -0.41 0.09 16 45 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.42 3.44 8.96 -40.82 -0.37 3.07 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -36.69 381.12 -7.56 -44.25 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.91 Total: 12.10 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.40 Total: 10.23 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.55 Total: -57.81 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: 0.27 Total: -28.41 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.69 -7.56 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178351240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.655 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds