Wall clock time and date at job start Tue Mar 31 2020 21:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99859 * 2 1 4 4 C 1.54328 * 109.88293 * 121.09469 * 2 1 3 5 5 H 1.09000 * 110.72202 * 215.76414 * 4 2 1 6 6 N 1.46893 * 110.72144 * 338.86609 * 4 2 1 7 7 C 1.46903 * 111.00304 * 202.55674 * 6 4 2 8 8 C 1.50696 * 109.47177 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.37090 * 119.99714 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00232 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99992 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55162 * 103.09747 * 97.31673 * 4 2 1 20 20 C 1.54904 * 101.58275 * 35.41248 * 19 4 2 21 21 N 1.47318 * 109.85273 * 238.70106 * 2 1 3 22 22 C 1.34782 * 125.61334 * 59.57724 * 21 2 1 23 23 O 1.21283 * 120.00035 * 359.80922 * 22 21 2 24 24 C 1.50700 * 119.99702 * 179.79829 * 22 21 2 25 25 H 1.08996 * 110.21795 * 320.47867 * 24 22 21 26 26 C 1.54477 * 110.24400 * 82.50678 * 24 22 21 27 27 C 1.54624 * 101.76558 * 144.41534 * 26 24 22 28 28 C 1.51284 * 104.19427 * 335.19760 * 27 26 24 29 29 O 1.21288 * 124.93629 * 196.23546 * 28 27 26 30 30 N 1.34411 * 110.11677 * 16.25418 * 28 27 26 31 31 H 1.08999 * 109.47453 * 298.89841 * 1 2 3 32 32 H 1.08998 * 109.47033 * 58.90324 * 1 2 3 33 33 H 1.09008 * 109.46751 * 178.90415 * 1 2 3 34 34 H 1.00899 * 111.00478 * 78.59853 * 6 4 2 35 35 H 1.09005 * 109.46883 * 59.99694 * 7 6 4 36 36 H 1.09002 * 109.46817 * 300.00144 * 7 6 4 37 37 H 0.96999 * 120.00048 * 0.02562 * 10 8 7 38 38 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 39 39 H 1.09003 * 110.99994 * 153.49273 * 19 4 2 40 40 H 1.09002 * 111.00037 * 277.29851 * 19 4 2 41 41 H 1.09008 * 110.36534 * 81.82925 * 20 19 4 42 42 H 1.08995 * 110.36559 * 204.03864 * 20 19 4 43 43 H 1.09003 * 110.96362 * 262.53468 * 26 24 22 44 44 H 1.09000 * 110.97526 * 26.29079 * 26 24 22 45 45 H 1.09004 * 110.48179 * 216.52212 * 27 26 24 46 46 H 1.09003 * 110.49142 * 93.87836 * 27 26 24 47 47 H 0.96999 * 124.34828 * 180.38543 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 1 2.9640 -0.2813 1.6201 6 7 1.0265 -0.8028 2.2903 7 6 1.6322 -1.0087 3.6127 8 6 0.5491 -1.0573 4.6593 9 8 -0.6132 -0.9331 4.3355 10 7 0.8719 -1.2397 5.9552 11 6 -0.1135 -1.2844 6.9072 12 1 -1.1484 -1.1739 6.6189 13 6 0.2192 -1.4720 8.2432 14 7 -0.7253 -1.5144 9.1560 15 14 2.0092 -1.6639 8.7419 16 1 2.3821 -3.1008 8.7046 17 1 2.8697 -0.9046 7.7994 18 1 2.1987 -1.1388 10.1180 19 6 2.3554 -2.1701 0.6957 20 6 2.8598 -1.8525 -0.7341 21 7 2.0303 -0.7198 -1.1840 22 6 1.7750 -0.3939 -2.4666 23 8 1.0760 0.5640 -2.7213 24 6 2.3583 -1.2195 -3.5843 25 1 3.3796 -1.5133 -3.3421 26 6 1.4861 -2.4692 -3.8370 27 6 1.5931 -2.6232 -5.3718 28 6 1.9115 -1.2283 -5.8634 29 8 1.8033 -0.8552 -7.0123 30 7 2.3320 -0.4629 -4.8416 31 1 -0.3634 0.4966 0.8997 32 1 -0.3633 0.5308 -0.8800 33 1 -0.3633 -1.0276 -0.0197 34 1 0.3432 -1.5178 2.0903 35 1 2.3129 -0.1862 3.8326 36 1 2.1846 -1.9484 3.6170 37 1 1.8013 -1.3394 6.2141 38 1 -0.4930 -1.6457 10.0885 39 1 3.1317 -2.6591 1.2843 40 1 1.4503 -2.7767 0.6657 41 1 3.9115 -1.5667 -0.7107 42 1 2.7157 -2.7132 -1.3870 43 1 1.8969 -3.3410 -3.3278 44 1 0.4541 -2.2926 -3.5337 45 1 0.6461 -2.9674 -5.7876 46 1 2.3973 -3.3118 -5.6311 47 1 2.5858 0.4696 -4.9247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178351240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:40 Heat of formation + Delta-G solvation = -118.177856 kcal Electronic energy + Delta-G solvation = -29345.461782 eV Core-core repulsion = 25141.146082 eV Total energy + Delta-G solvation = -4204.315700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98925 -40.82917 -40.17715 -38.96713 -37.23964 -36.19703 -35.56685 -33.72071 -32.50140 -32.20270 -31.70656 -29.23361 -28.13778 -26.42325 -25.25240 -24.27215 -23.19748 -21.69546 -21.32569 -21.25166 -20.31418 -20.05425 -18.74955 -18.33257 -17.69978 -17.26025 -16.86184 -16.80423 -16.58329 -16.37217 -15.92599 -15.56937 -15.40946 -14.99546 -14.75277 -14.71333 -14.53348 -14.38484 -14.16835 -13.98659 -13.81748 -13.62776 -13.58177 -13.39254 -13.06268 -13.02395 -12.87143 -12.65529 -12.45502 -12.38056 -12.10136 -11.96865 -11.79933 -11.62281 -11.47484 -11.13935 -11.00285 -10.40334 -10.21903 -10.18426 -9.69060 -9.22146 -8.38586 -5.99642 1.32656 1.38551 1.41314 1.45379 1.47734 1.77991 2.00902 2.26044 2.38350 2.77993 3.18412 3.21990 3.30792 3.37619 3.55820 3.67910 3.83994 3.98322 4.05028 4.11010 4.18325 4.27209 4.39366 4.46853 4.47317 4.54862 4.63574 4.67887 4.76620 4.78548 4.82703 4.97757 5.02744 5.04288 5.15519 5.19011 5.39659 5.41566 5.55689 5.65554 5.90102 5.94465 6.10317 6.40053 6.49094 6.62954 6.91905 7.02726 7.14187 7.43842 8.01512 8.79162 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.001911 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.012249 B =14650.321190 C =14880.618733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.145 3.855 3 H 0.064 0.936 4 C 0.086 3.914 5 H 0.114 0.886 6 N -0.677 5.677 7 C 0.065 3.935 8 C 0.447 3.553 9 O -0.617 6.617 10 N -0.591 5.591 11 C -0.328 4.328 12 H 0.052 0.948 13 C -0.019 4.019 14 N -0.937 5.937 15 Si 0.967 3.033 16 H -0.255 1.255 17 H -0.228 1.228 18 H -0.280 1.280 19 C -0.160 4.160 20 C 0.094 3.906 21 N -0.606 5.606 22 C 0.515 3.485 23 O -0.579 6.579 24 C 0.121 3.879 25 H 0.147 0.853 26 C -0.114 4.114 27 C -0.144 4.144 28 C 0.510 3.490 29 O -0.588 6.588 30 N -0.713 5.713 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.348 0.652 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.278 0.722 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.142 0.858 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.459 -8.034 -22.853 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.025 4.025 5 H 0.132 0.868 6 N -0.309 5.309 7 C -0.067 4.067 8 C 0.235 3.765 9 O -0.501 6.501 10 N -0.233 5.233 11 C -0.457 4.457 12 H 0.071 0.929 13 C -0.217 4.217 14 N -0.578 5.578 15 Si 0.787 3.213 16 H -0.179 1.179 17 H -0.151 1.151 18 H -0.205 1.205 19 C -0.199 4.199 20 C -0.027 4.027 21 N -0.339 5.339 22 C 0.303 3.697 23 O -0.459 6.459 24 C 0.013 3.987 25 H 0.165 0.835 26 C -0.152 4.152 27 C -0.184 4.184 28 C 0.298 3.702 29 O -0.468 6.468 30 N -0.367 5.367 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.226 0.774 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.159 0.841 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 18.099 -6.694 -23.563 30.457 hybrid contribution 0.095 0.155 0.882 0.900 sum 18.194 -6.539 -22.682 29.804 Atomic orbital electron populations 1.21775 0.95671 1.01454 1.01119 1.21457 0.94208 0.95674 0.84605 0.91756 1.22648 0.94240 0.96108 0.89504 0.86760 1.59936 1.15247 1.55533 1.00194 1.21650 0.93836 1.03845 0.87331 1.21133 0.90883 0.80862 0.83655 1.90563 1.23168 1.54875 1.81524 1.42021 1.08305 1.66682 1.06295 1.18989 0.89710 1.49078 0.87946 0.92948 1.26175 1.04679 0.96229 0.94619 1.69820 1.35782 1.49867 1.02322 0.85332 0.76752 0.80131 0.79067 1.17917 1.15080 1.20518 1.23567 1.03379 0.96562 0.96406 1.22706 0.95555 0.88799 0.95640 1.48689 1.50140 1.31113 1.03993 1.20929 0.80581 0.84893 0.83292 1.90750 1.40184 1.31178 1.83740 1.21876 1.03429 0.91651 0.81741 0.83526 1.22733 1.00374 0.96584 0.95527 1.22426 1.06736 0.93206 0.95987 1.21685 0.74388 0.90085 0.84008 1.90743 1.55715 1.79539 1.20843 1.46166 1.67101 1.14874 1.08547 0.91779 0.94463 0.92962 0.83145 0.86737 0.89383 0.77367 0.91254 0.86929 0.90766 0.88107 0.87048 0.83601 0.90936 0.87203 0.84059 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.22 71.98 0.59 -2.98 16 2 C 0.14 2.70 3.50 45.29 0.16 2.86 16 3 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.09 1.22 3.11 46.11 0.14 1.37 16 5 H 0.11 1.25 7.86 -2.39 -0.02 1.23 16 6 N -0.68 -16.02 4.44 -489.44 -2.17 -18.19 16 7 C 0.07 1.61 6.04 85.56 0.52 2.12 16 8 C 0.45 18.54 7.82 87.65 0.69 19.22 16 9 O -0.62 -32.63 15.78 -3.07 -0.05 -32.68 16 10 N -0.59 -26.11 5.09 -306.98 -1.56 -27.67 16 11 C -0.33 -18.65 10.16 84.04 0.85 -17.79 16 12 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 13 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 14 N -0.94 -55.69 13.96 21.66 0.30 -55.39 16 15 Si 0.97 36.95 27.74 68.60 1.90 38.85 16 16 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 17 H -0.23 -7.10 6.52 99.48 0.65 -6.45 16 18 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 19 C -0.16 -1.11 6.67 31.99 0.21 -0.90 16 20 C 0.09 0.32 6.40 86.85 0.56 0.87 16 21 N -0.61 -7.78 3.09 -787.36 -2.43 -10.21 16 22 C 0.52 8.58 6.82 87.66 0.60 9.18 16 23 O -0.58 -16.13 15.49 -3.04 -0.05 -16.18 16 24 C 0.12 1.02 3.13 44.70 0.14 1.16 16 25 H 0.15 0.07 7.70 -2.39 -0.02 0.05 16 26 C -0.11 -0.50 6.33 31.65 0.20 -0.30 16 27 C -0.14 -1.02 6.86 30.59 0.21 -0.81 16 28 C 0.51 9.23 8.43 87.90 0.74 9.97 16 29 O -0.59 -16.78 18.03 -3.05 -0.06 -16.84 16 30 N -0.71 -10.79 5.47 -442.97 -2.42 -13.22 16 31 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 32 H 0.04 1.09 6.77 -2.39 -0.02 1.07 16 33 H 0.05 1.24 7.93 -2.38 -0.02 1.22 16 34 H 0.35 9.15 7.36 -89.69 -0.66 8.49 16 35 H 0.11 2.32 8.08 -2.38 -0.02 2.30 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.39 13.87 5.76 -92.71 -0.53 13.34 16 38 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 41 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 42 H 0.11 -0.28 6.75 -2.39 -0.02 -0.30 16 43 H 0.15 -0.61 7.51 -2.39 -0.02 -0.63 16 44 H 0.07 0.64 7.91 -2.39 -0.02 0.62 16 45 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.41 6.91 8.96 -92.71 -0.83 6.08 16 Total: -1.00 -93.58 381.12 -1.51 -95.09 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -1.05 Total: 33.02 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.08 Total: 23.42 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -8.28 Total: -124.68 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -0.15 Total: -65.70 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.90 Total: 38.85 kcal Total: -93.58 -1.51 -95.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178351240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.092 kcal (2) G-P(sol) polarization free energy of solvation -93.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds