Wall clock time and date at job start Tue Mar 31 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.99495 * 2 1 4 4 C 1.54319 * 109.88310 * 121.09539 * 2 1 3 5 5 H 1.09000 * 110.71878 * 215.76499 * 4 2 1 6 6 N 1.46899 * 110.72262 * 338.85927 * 4 2 1 7 7 C 1.46898 * 111.00327 * 193.41073 * 6 4 2 8 8 C 1.50698 * 109.47399 * 180.02562 * 7 6 4 9 9 O 1.21289 * 120.00017 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99891 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99860 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99649 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00369 * 179.72249 * 11 10 8 14 14 N 1.31411 * 119.99269 * 0.28051 * 13 11 10 15 15 Si 1.86792 * 120.00290 * 180.27706 * 13 11 10 16 16 H 1.48500 * 109.47164 * 60.00345 * 15 13 11 17 17 H 1.48509 * 109.47098 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47490 * 300.00197 * 15 13 11 19 19 C 1.55149 * 103.10353 * 97.31365 * 4 2 1 20 20 C 1.54912 * 101.58177 * 35.41330 * 19 4 2 21 21 N 1.47319 * 109.84589 * 238.70098 * 2 1 3 22 22 C 1.34778 * 125.61839 * 59.50552 * 21 2 1 23 23 O 1.21279 * 119.99552 * 359.83566 * 22 21 2 24 24 C 1.50697 * 120.00124 * 179.83382 * 22 21 2 25 25 H 1.09011 * 110.43030 * 57.45768 * 24 22 21 26 26 C 1.54625 * 110.48878 * 179.97438 * 24 22 21 27 27 C 1.54478 * 101.76040 * 93.88325 * 26 24 22 28 28 N 1.46759 * 105.47598 * 25.41756 * 27 26 24 29 29 C 1.34421 * 111.30177 * 342.98247 * 28 27 26 30 30 O 1.21279 * 124.94136 * 180.44377 * 29 28 27 31 31 H 1.09002 * 109.46751 * 304.84978 * 1 2 3 32 32 H 1.08996 * 109.47539 * 64.85085 * 1 2 3 33 33 H 1.09001 * 109.46657 * 184.85278 * 1 2 3 34 34 H 1.00901 * 111.00216 * 317.36211 * 6 4 2 35 35 H 1.08997 * 109.47064 * 59.99646 * 7 6 4 36 36 H 1.09001 * 109.46885 * 300.00507 * 7 6 4 37 37 H 0.96997 * 120.00508 * 0.02562 * 10 8 7 38 38 H 0.97006 * 119.99402 * 180.02562 * 14 13 11 39 39 H 1.09003 * 111.00781 * 153.48469 * 19 4 2 40 40 H 1.08997 * 111.00547 * 277.29765 * 19 4 2 41 41 H 1.09000 * 110.36886 * 81.83232 * 20 19 4 42 42 H 1.09003 * 110.36840 * 204.15293 * 20 19 4 43 43 H 1.08992 * 110.97085 * 212.00263 * 26 24 22 44 44 H 1.09003 * 110.96819 * 335.76902 * 26 24 22 45 45 H 1.09001 * 110.24724 * 144.42009 * 27 26 24 46 46 H 1.09004 * 110.24657 * 266.32525 * 27 26 24 47 47 H 0.97002 * 124.34936 * 162.97935 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9640 -0.2812 1.6200 6 7 1.0266 -0.8027 2.2904 7 6 1.6043 -1.2220 3.5743 8 6 0.5219 -1.2655 4.6219 9 8 -0.6185 -0.9752 4.3281 10 7 0.8211 -1.6269 5.8853 11 6 -0.1636 -1.6659 6.8386 12 1 -1.1790 -1.4074 6.5768 13 6 0.1437 -2.0441 8.1399 14 7 1.3792 -2.3590 8.4581 15 14 -1.1993 -2.1047 9.4367 16 1 -2.2465 -3.0716 9.0200 17 1 -0.6163 -2.5339 10.7334 18 1 -1.8026 -0.7562 9.5880 19 6 2.3554 -2.1700 0.6958 20 6 2.8598 -1.8525 -0.7341 21 7 2.0302 -0.7199 -1.1840 22 6 1.7737 -0.3948 -2.4666 23 8 1.0740 0.5625 -2.7212 24 6 2.3563 -1.2208 -3.5843 25 1 2.0503 -2.2626 -3.4870 26 6 1.9234 -0.6561 -4.9571 27 6 3.1085 0.2724 -5.3035 28 7 4.2583 -0.2703 -4.5705 29 6 3.8649 -1.1077 -3.5955 30 8 4.6107 -1.6876 -2.8349 31 1 -0.3633 0.5873 0.8434 32 1 -0.3634 0.4367 -0.9302 33 1 -0.3633 -1.0240 0.0869 34 1 0.5544 0.0846 2.3790 35 1 2.3739 -0.5115 3.8757 36 1 2.0462 -2.2127 3.4676 37 1 1.7331 -1.8587 6.1205 38 1 1.5936 -2.6234 9.3664 39 1 3.1318 -2.6591 1.2843 40 1 1.4504 -2.7766 0.6658 41 1 3.9114 -1.5668 -0.7107 42 1 2.7139 -2.7126 -1.3875 43 1 1.8246 -1.4536 -5.6934 44 1 0.9962 -0.0895 -4.8710 45 1 3.3017 0.2532 -6.3760 46 1 2.8978 1.2908 -4.9769 47 1 5.1835 -0.0526 -4.7648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179299943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:59 Heat of formation + Delta-G solvation = -117.943913 kcal Electronic energy + Delta-G solvation = -29718.836260 eV Core-core repulsion = 25514.530705 eV Total energy + Delta-G solvation = -4204.305555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18871 -40.71205 -40.02726 -38.95396 -37.30248 -36.18864 -35.56043 -33.29651 -32.97602 -32.07047 -31.51714 -28.88750 -28.10836 -26.54354 -25.47355 -24.48825 -23.02690 -22.33537 -21.09772 -20.78638 -20.02651 -19.88158 -18.70713 -18.49516 -17.79682 -17.30805 -17.06100 -16.87482 -16.58134 -16.27391 -15.89824 -15.76896 -15.32185 -15.23970 -14.88573 -14.68058 -14.50388 -14.41975 -14.16670 -13.98268 -13.71761 -13.49101 -13.38565 -13.34011 -13.13029 -12.88301 -12.72168 -12.52630 -12.42545 -12.37588 -12.19484 -12.12177 -11.86795 -11.66401 -11.49015 -11.14154 -10.89678 -10.33378 -10.13389 -10.00506 -9.75298 -9.37829 -8.45681 -5.94177 1.16466 1.40373 1.42209 1.48987 1.53029 1.86526 2.06903 2.29842 2.37711 2.88896 3.21363 3.22516 3.25059 3.41780 3.50636 3.61911 3.67891 3.98819 4.02228 4.18546 4.24459 4.29343 4.30556 4.42876 4.47616 4.51624 4.61643 4.63722 4.67594 4.74649 4.80703 5.00636 5.01406 5.02521 5.10765 5.22486 5.29041 5.38362 5.41817 5.71887 5.87602 5.93007 6.09022 6.31365 6.40916 6.61241 6.95745 7.12536 7.13674 7.57687 8.13008 8.71404 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.002006 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.219825 B =13953.366792 C =14513.082601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.140 3.860 3 H 0.071 0.929 4 C 0.080 3.920 5 H 0.070 0.930 6 N -0.663 5.663 7 C 0.065 3.935 8 C 0.439 3.561 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.121 4.121 20 C 0.111 3.889 21 N -0.606 5.606 22 C 0.540 3.460 23 O -0.559 6.559 24 C -0.146 4.146 25 H 0.146 0.854 26 C -0.115 4.115 27 C 0.098 3.902 28 N -0.718 5.718 29 C 0.525 3.475 30 O -0.551 6.551 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.347 0.653 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.009 2.152 -28.625 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.037 3.963 3 H 0.089 0.911 4 C -0.030 4.030 5 H 0.087 0.913 6 N -0.297 5.297 7 C -0.067 4.067 8 C 0.226 3.774 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.197 1.197 19 C -0.159 4.159 20 C -0.011 4.011 21 N -0.339 5.339 22 C 0.328 3.672 23 O -0.438 6.438 24 C -0.171 4.171 25 H 0.164 0.836 26 C -0.153 4.153 27 C -0.026 4.026 28 N -0.373 5.373 29 C 0.309 3.691 30 O -0.429 6.429 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.137 0.863 44 H 0.118 0.882 45 H 0.136 0.864 46 H 0.087 0.913 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.027 1.873 -28.598 29.762 hybrid contribution 0.643 0.768 1.357 1.687 sum 8.671 2.641 -27.240 28.709 Atomic orbital electron populations 1.21803 0.94100 1.02434 1.01474 1.21571 0.95272 0.95245 0.84259 0.91066 1.22570 0.93247 0.97009 0.90187 0.91259 1.60279 1.27772 1.37323 1.04373 1.21560 0.93848 1.03209 0.88081 1.20842 0.90430 0.82344 0.83746 1.90497 1.23928 1.55155 1.81292 1.41920 1.11297 1.60103 1.07738 1.19620 0.91776 1.44982 0.89911 0.90345 1.26034 0.99523 0.96145 0.99650 1.69667 1.19131 1.45742 1.21524 0.84996 0.77660 0.78793 0.76933 1.19769 1.19521 1.19739 1.22899 1.02461 0.95879 0.94677 1.22516 0.94736 0.88532 0.95321 1.48666 1.49728 1.30875 1.04670 1.19893 0.80362 0.84597 0.82324 1.90680 1.39949 1.29846 1.83280 1.22175 0.94428 1.03958 0.96505 0.83613 1.22688 0.99623 1.00549 0.92425 1.22307 0.84066 0.97456 0.98730 1.46205 1.11035 1.45648 1.34414 1.20450 0.89765 0.78714 0.80158 1.90755 1.60464 1.49042 1.42645 0.91769 0.92688 0.92548 0.83241 0.91451 0.87472 0.76945 0.91323 0.88348 0.90389 0.90271 0.89193 0.86285 0.88225 0.86375 0.91254 0.73820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.32 71.98 0.60 -3.23 16 2 C 0.14 3.44 3.44 45.28 0.16 3.60 16 3 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 4 C 0.08 1.90 3.08 46.10 0.14 2.04 16 5 H 0.07 1.50 8.00 -2.39 -0.02 1.48 16 6 N -0.66 -20.26 5.04 -489.48 -2.47 -22.72 16 7 C 0.07 2.16 6.02 85.56 0.51 2.67 16 8 C 0.44 20.62 7.82 87.66 0.69 21.31 16 9 O -0.62 -34.24 15.78 -3.06 -0.05 -34.29 16 10 N -0.57 -29.25 5.29 -306.99 -1.62 -30.87 16 11 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 12 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 15 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.12 -2.53 6.37 31.98 0.20 -2.32 16 20 C 0.11 2.20 5.17 86.86 0.45 2.65 16 21 N -0.61 -13.69 3.09 -787.33 -2.43 -16.12 16 22 C 0.54 11.99 7.00 87.66 0.61 12.60 16 23 O -0.56 -15.25 14.30 -3.03 -0.04 -15.29 16 24 C -0.15 -2.16 2.61 -11.55 -0.03 -2.19 16 25 H 0.15 1.69 7.76 -2.38 -0.02 1.67 16 26 C -0.12 -1.01 6.50 31.65 0.21 -0.81 16 27 C 0.10 0.69 7.78 86.83 0.68 1.37 16 28 N -0.72 -7.78 6.24 -459.81 -2.87 -10.65 16 29 C 0.52 8.88 7.49 87.90 0.66 9.54 16 30 O -0.55 -12.73 15.12 -3.03 -0.05 -12.78 16 31 H 0.06 1.81 6.71 -2.39 -0.02 1.79 16 32 H 0.05 1.58 6.59 -2.39 -0.02 1.57 16 33 H 0.06 1.66 8.11 -2.39 -0.02 1.65 16 34 H 0.35 11.33 6.67 -89.69 -0.60 10.73 16 35 H 0.07 1.95 8.11 -2.39 -0.02 1.94 16 36 H 0.11 3.16 7.87 -2.39 -0.02 3.14 16 37 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 38 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.68 6.81 -2.39 -0.02 1.66 16 42 H 0.09 1.57 7.32 -2.39 -0.02 1.55 16 43 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.10 1.17 6.96 -2.39 -0.02 1.16 16 45 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.42 3.26 8.96 -92.71 -0.83 2.43 16 Total: -1.00 -74.62 377.65 -2.19 -76.81 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -1.13 Total: 41.30 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 6.15 Total: 28.84 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -9.10 Total: -129.69 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -0.14 Total: -62.36 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.62 -2.19 -76.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179299943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.135 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds