Wall clock time and date at job start Tue Mar 31 2020 21:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.00082 * 2 1 4 4 C 1.54331 * 109.88123 * 121.09301 * 2 1 3 5 5 H 1.08999 * 110.87239 * 215.65794 * 4 2 1 6 6 N 1.46893 * 110.72126 * 338.86390 * 4 2 1 7 7 C 1.46903 * 111.00304 * 199.97357 * 6 4 2 8 8 C 1.50696 * 109.47177 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.37090 * 119.99714 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00232 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99992 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55161 * 102.93734 * 97.22474 * 4 2 1 20 20 C 1.54909 * 101.58321 * 35.50563 * 19 4 2 21 21 N 1.47019 * 109.88305 * 238.90284 * 2 1 3 22 22 C 1.34774 * 125.65017 * 59.49090 * 21 2 1 23 23 O 1.21284 * 119.99769 * 0.02562 * 22 21 2 24 24 C 1.50696 * 120.00289 * 180.02562 * 22 21 2 25 25 H 1.08996 * 110.21876 * 41.92400 * 24 22 21 26 26 C 1.54481 * 110.24513 * 279.99762 * 24 22 21 27 27 C 1.54628 * 101.76640 * 215.58626 * 26 24 22 28 28 C 1.51278 * 104.19597 * 24.79414 * 27 26 24 29 29 O 1.21276 * 124.94165 * 163.75046 * 28 27 26 30 30 N 1.34419 * 110.11798 * 343.74920 * 28 27 26 31 31 H 1.08999 * 109.46942 * 298.90846 * 1 2 3 32 32 H 1.09000 * 109.47053 * 58.90446 * 1 2 3 33 33 H 1.08995 * 109.47297 * 178.90619 * 1 2 3 34 34 H 1.00899 * 111.00478 * 76.01536 * 6 4 2 35 35 H 1.09005 * 109.46883 * 59.99694 * 7 6 4 36 36 H 1.09002 * 109.46817 * 300.00144 * 7 6 4 37 37 H 0.96999 * 120.00048 * 0.02562 * 10 8 7 38 38 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 39 39 H 1.09005 * 110.99993 * 153.57440 * 19 4 2 40 40 H 1.08997 * 111.00221 * 277.38675 * 19 4 2 41 41 H 1.08998 * 110.36759 * 81.82682 * 20 19 4 42 42 H 1.09004 * 110.36217 * 204.15075 * 20 19 4 43 43 H 1.09000 * 110.97119 * 333.70075 * 26 24 22 44 44 H 1.09003 * 110.97305 * 97.46010 * 26 24 22 45 45 H 1.08995 * 110.48897 * 143.47775 * 27 26 24 46 46 H 1.09006 * 110.48474 * 265.98416 * 27 26 24 47 47 H 0.96996 * 124.35290 * 179.56967 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9651 -0.2844 1.6212 6 7 1.0265 -0.8027 2.2904 7 6 1.6267 -1.0696 3.6044 8 6 0.5437 -1.1163 4.6512 9 8 -0.6143 -0.9447 4.3339 10 7 0.8619 -1.3498 5.9400 11 6 -0.1233 -1.3928 6.8922 12 1 -1.1545 -1.2400 6.6097 13 6 0.2047 -1.6330 8.2210 14 7 -0.7397 -1.6737 9.1339 15 14 1.9881 -1.8980 8.7095 16 1 2.3145 -3.3443 8.6263 17 1 2.8716 -1.1374 7.7896 18 1 2.1960 -1.4229 10.1011 19 6 2.3518 -2.1695 0.6924 20 6 2.8568 -1.8498 -0.7367 21 7 2.0300 -0.7141 -1.1839 22 6 1.7743 -0.3853 -2.4656 23 8 1.0771 0.5745 -2.7180 24 6 2.3547 -1.2102 -3.5853 25 1 2.2818 -2.2716 -3.3481 26 6 3.8284 -0.8172 -3.8304 27 6 3.9424 -0.9626 -5.3656 28 6 2.5247 -0.7819 -5.8617 29 8 2.2154 -0.5464 -7.0104 30 7 1.6576 -0.9203 -4.8439 31 1 -0.3633 0.4968 0.8996 32 1 -0.3633 0.5308 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 0.3203 -1.4887 2.0694 35 1 2.3337 -0.2767 3.8486 36 1 2.1485 -2.0262 3.5779 37 1 1.7880 -1.4874 6.1936 38 1 -0.5107 -1.8417 10.0614 39 1 3.1270 -2.6618 1.2797 40 1 1.4452 -2.7738 0.6611 41 1 3.9092 -1.5668 -0.7127 42 1 2.7088 -2.7081 -1.3921 43 1 4.0145 0.2113 -3.5212 44 1 4.5051 -1.5042 -3.3222 45 1 4.5914 -0.1886 -5.7750 46 1 4.3174 -1.9519 -5.6283 47 1 0.6949 -0.8386 -4.9301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179967770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:46 Heat of formation + Delta-G solvation = -85.605543 kcal Electronic energy + Delta-G solvation = -29295.923939 eV Core-core repulsion = 25093.020681 eV Total energy + Delta-G solvation = -4202.903258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37703 -40.13051 -38.69769 -38.00244 -36.52472 -34.98848 -33.93324 -31.91895 -31.74303 -31.51007 -30.98324 -28.53941 -26.87555 -25.37333 -24.04163 -23.54679 -22.69622 -21.10741 -20.69549 -19.53136 -19.36095 -18.52552 -18.00606 -17.75506 -16.59667 -16.26559 -16.18088 -15.80627 -15.55559 -15.13034 -14.86603 -14.52740 -14.18156 -14.12255 -14.01349 -13.83024 -13.59840 -13.36699 -13.22256 -13.06288 -12.95525 -12.71314 -12.49735 -12.45521 -12.32818 -12.06666 -11.74453 -11.70963 -11.63050 -11.22535 -11.05597 -10.96642 -10.65067 -10.41420 -10.28539 -10.02810 -9.63162 -9.52457 -9.04018 -8.68448 -8.28444 -8.22411 -6.36134 -3.87949 2.08087 2.10818 2.40375 2.95287 2.97187 3.01099 3.10498 3.66469 3.69772 3.75240 3.86145 3.96239 4.04901 4.13919 4.29787 4.37690 4.44117 4.64745 4.76913 4.80417 4.87399 4.93334 5.03084 5.08318 5.16089 5.17592 5.29561 5.32716 5.39664 5.45906 5.54230 5.63173 5.66291 5.73471 5.85422 5.98598 6.19901 6.27140 6.45811 6.54664 6.93286 7.09353 7.39254 7.52223 7.68968 7.81160 8.08816 8.53660 8.89545 9.36564 9.75956 10.76862 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035680 B = 0.001906 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.556371 B =14685.275183 C =15200.797769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.080 0.920 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.654 5.654 7 C 0.048 3.952 8 C 0.448 3.552 9 O -0.564 6.564 10 N -0.589 5.589 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.276 1.276 19 C -0.169 4.169 20 C 0.098 3.902 21 N -0.610 5.610 22 C 0.521 3.479 23 O -0.523 6.523 24 C 0.116 3.884 25 H 0.105 0.895 26 C -0.121 4.121 27 C -0.155 4.155 28 C 0.523 3.477 29 O -0.530 6.530 30 N -0.709 5.709 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.356 0.644 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.346 -3.652 -22.497 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.029 4.029 5 H 0.114 0.886 6 N -0.286 5.286 7 C -0.085 4.085 8 C 0.234 3.766 9 O -0.446 6.446 10 N -0.229 5.229 11 C -0.435 4.435 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.707 3.293 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.202 1.202 19 C -0.209 4.209 20 C -0.025 4.025 21 N -0.346 5.346 22 C 0.307 3.693 23 O -0.398 6.398 24 C 0.007 3.993 25 H 0.123 0.877 26 C -0.159 4.159 27 C -0.195 4.195 28 C 0.309 3.691 29 O -0.406 6.406 30 N -0.366 5.366 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.177 0.823 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.009 -2.214 -23.193 27.714 hybrid contribution 1.241 -1.265 0.765 1.930 sum 16.250 -3.479 -22.428 27.914 Atomic orbital electron populations 1.21969 0.93468 1.02170 1.03686 1.21546 0.96041 0.95632 0.82629 0.90183 1.22629 0.95187 0.93809 0.91292 0.88599 1.60044 1.12445 1.56334 0.99761 1.21739 0.96714 1.00389 0.89623 1.19676 0.89783 0.84115 0.83068 1.90579 1.20269 1.53242 1.80508 1.42199 1.08755 1.64888 1.07016 1.19429 0.91281 1.46359 0.86408 0.86268 1.25055 0.97977 0.97630 0.95521 1.69622 1.32214 1.48172 1.01953 0.86665 0.84494 0.78971 0.79189 1.19673 1.19485 1.20154 1.23614 1.02823 0.99028 0.95422 1.22363 0.95131 0.88927 0.96086 1.48609 1.50457 1.30486 1.05009 1.20231 0.81274 0.85444 0.82342 1.90765 1.37879 1.28236 1.82903 1.21577 0.93694 0.99811 0.84262 0.87710 1.22604 0.92934 1.04308 0.96032 1.22375 0.95717 1.05750 0.95646 1.20819 0.88639 0.74977 0.84666 1.90782 1.82786 1.48627 1.18421 1.45969 1.10274 1.72579 1.07749 0.89198 0.92083 0.93186 0.82251 0.89336 0.93560 0.79706 0.91568 0.89448 0.90045 0.90638 0.90447 0.89246 0.88054 0.87448 0.87210 0.74332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.19 37.16 0.30 -1.56 16 2 C 0.14 1.43 3.48 -66.95 -0.23 1.20 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.73 3.11 -65.88 -0.21 0.53 16 5 H 0.10 0.76 7.89 -51.93 -0.41 0.35 16 6 N -0.65 -8.42 4.49 -106.05 -0.48 -8.89 16 7 C 0.05 0.68 6.02 -4.98 -0.03 0.65 16 8 C 0.45 9.44 7.82 -10.98 -0.09 9.36 16 9 O -0.56 -14.38 15.78 5.55 0.09 -14.29 16 10 N -0.59 -13.28 5.09 -10.96 -0.06 -13.33 16 11 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 12 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.16 13.96 55.50 0.77 -24.38 16 15 Si 0.88 18.61 27.74 -169.99 -4.71 13.90 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 C -0.17 -1.05 6.63 -24.58 -0.16 -1.22 16 20 C 0.10 0.45 6.69 -2.53 -0.02 0.43 16 21 N -0.61 -4.76 3.08 -163.01 -0.50 -5.26 16 22 C 0.52 4.73 6.83 -10.99 -0.08 4.66 16 23 O -0.52 -7.03 15.45 5.55 0.09 -6.94 16 24 C 0.12 0.67 3.28 -68.16 -0.22 0.45 16 25 H 0.11 0.36 7.04 -51.93 -0.37 -0.01 16 26 C -0.12 -0.44 6.67 -25.10 -0.17 -0.60 16 27 C -0.15 -0.72 6.86 -26.74 -0.18 -0.90 16 28 C 0.52 4.84 8.43 -10.86 -0.09 4.75 16 29 O -0.53 -7.28 18.03 5.56 0.10 -7.18 16 30 N -0.71 -5.77 5.46 -53.88 -0.29 -6.07 16 31 H 0.09 1.25 7.40 -51.93 -0.38 0.86 16 32 H 0.06 0.82 6.77 -51.93 -0.35 0.47 16 33 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 34 H 0.36 4.90 7.25 -39.29 -0.28 4.62 16 35 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.37 7.23 5.76 -40.82 -0.24 6.99 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.59 7.81 -51.93 -0.41 0.18 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.21 6.99 -51.93 -0.36 -0.16 16 43 H 0.09 0.41 7.91 -51.93 -0.41 0.00 16 44 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.42 3.59 8.94 -40.82 -0.36 3.23 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -36.79 381.89 -7.58 -44.37 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.92 Total: 12.12 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -1.42 Total: 10.20 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.55 Total: -57.94 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.27 Total: -28.42 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.79 -7.58 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179967770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.233 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds