Wall clock time and date at job start Tue Mar 31 2020 21:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.00082 * 2 1 4 4 C 1.54331 * 109.88123 * 121.09301 * 2 1 3 5 5 H 1.08999 * 110.87239 * 215.65794 * 4 2 1 6 6 N 1.46893 * 110.72126 * 338.86390 * 4 2 1 7 7 C 1.46903 * 111.00304 * 199.97357 * 6 4 2 8 8 C 1.50696 * 109.47177 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99627 * 179.97438 * 8 7 6 11 11 C 1.37090 * 119.99714 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00232 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99992 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11 18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11 19 19 C 1.55161 * 102.93734 * 97.22474 * 4 2 1 20 20 C 1.54909 * 101.58321 * 35.50563 * 19 4 2 21 21 N 1.47019 * 109.88305 * 238.90284 * 2 1 3 22 22 C 1.34774 * 125.65017 * 59.49090 * 21 2 1 23 23 O 1.21284 * 119.99769 * 0.02562 * 22 21 2 24 24 C 1.50696 * 120.00289 * 180.02562 * 22 21 2 25 25 H 1.08996 * 110.21876 * 41.92400 * 24 22 21 26 26 C 1.54481 * 110.24513 * 279.99762 * 24 22 21 27 27 C 1.54628 * 101.76640 * 215.58626 * 26 24 22 28 28 C 1.51278 * 104.19597 * 24.79414 * 27 26 24 29 29 O 1.21276 * 124.94165 * 163.75046 * 28 27 26 30 30 N 1.34419 * 110.11798 * 343.74920 * 28 27 26 31 31 H 1.08999 * 109.46942 * 298.90846 * 1 2 3 32 32 H 1.09000 * 109.47053 * 58.90446 * 1 2 3 33 33 H 1.08995 * 109.47297 * 178.90619 * 1 2 3 34 34 H 1.00899 * 111.00478 * 76.01536 * 6 4 2 35 35 H 1.09005 * 109.46883 * 59.99694 * 7 6 4 36 36 H 1.09002 * 109.46817 * 300.00144 * 7 6 4 37 37 H 0.96999 * 120.00048 * 0.02562 * 10 8 7 38 38 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 39 39 H 1.09005 * 110.99993 * 153.57440 * 19 4 2 40 40 H 1.08997 * 111.00221 * 277.38675 * 19 4 2 41 41 H 1.08998 * 110.36759 * 81.82682 * 20 19 4 42 42 H 1.09004 * 110.36217 * 204.15075 * 20 19 4 43 43 H 1.09000 * 110.97119 * 333.70075 * 26 24 22 44 44 H 1.09003 * 110.97305 * 97.46010 * 26 24 22 45 45 H 1.08995 * 110.48897 * 143.47775 * 27 26 24 46 46 H 1.09006 * 110.48474 * 265.98416 * 27 26 24 47 47 H 0.96996 * 124.35290 * 179.56967 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9651 -0.2844 1.6212 6 7 1.0265 -0.8027 2.2904 7 6 1.6267 -1.0696 3.6044 8 6 0.5437 -1.1163 4.6512 9 8 -0.6143 -0.9447 4.3339 10 7 0.8619 -1.3498 5.9400 11 6 -0.1233 -1.3928 6.8922 12 1 -1.1545 -1.2400 6.6097 13 6 0.2047 -1.6330 8.2210 14 7 -0.7397 -1.6737 9.1339 15 14 1.9881 -1.8980 8.7095 16 1 2.3145 -3.3443 8.6263 17 1 2.8716 -1.1374 7.7896 18 1 2.1960 -1.4229 10.1011 19 6 2.3518 -2.1695 0.6924 20 6 2.8568 -1.8498 -0.7367 21 7 2.0300 -0.7141 -1.1839 22 6 1.7743 -0.3853 -2.4656 23 8 1.0771 0.5745 -2.7180 24 6 2.3547 -1.2102 -3.5853 25 1 2.2818 -2.2716 -3.3481 26 6 3.8284 -0.8172 -3.8304 27 6 3.9424 -0.9626 -5.3656 28 6 2.5247 -0.7819 -5.8617 29 8 2.2154 -0.5464 -7.0104 30 7 1.6576 -0.9203 -4.8439 31 1 -0.3633 0.4968 0.8996 32 1 -0.3633 0.5308 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 0.3203 -1.4887 2.0694 35 1 2.3337 -0.2767 3.8486 36 1 2.1485 -2.0262 3.5779 37 1 1.7880 -1.4874 6.1936 38 1 -0.5107 -1.8417 10.0614 39 1 3.1270 -2.6618 1.2797 40 1 1.4452 -2.7738 0.6611 41 1 3.9092 -1.5668 -0.7127 42 1 2.7088 -2.7081 -1.3921 43 1 4.0145 0.2113 -3.5212 44 1 4.5051 -1.5042 -3.3222 45 1 4.5914 -0.1886 -5.7750 46 1 4.3174 -1.9519 -5.6283 47 1 0.6949 -0.8386 -4.9301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179967770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:45 Heat of formation + Delta-G solvation = -118.034826 kcal Electronic energy + Delta-G solvation = -29297.330178 eV Core-core repulsion = 25093.020681 eV Total energy + Delta-G solvation = -4204.309498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98675 -40.84084 -40.18085 -38.97212 -37.23238 -36.20117 -35.57329 -33.72469 -32.51047 -32.18673 -31.69242 -29.22702 -28.12960 -26.43956 -25.27236 -24.29686 -23.12388 -21.70282 -21.31538 -21.25916 -20.31902 -20.06992 -18.69475 -18.32995 -17.69962 -17.32257 -16.93381 -16.76945 -16.59182 -16.37595 -15.97586 -15.54107 -15.20289 -15.00217 -14.83465 -14.69953 -14.50460 -14.41882 -14.16886 -13.99799 -13.82129 -13.63056 -13.60194 -13.39824 -13.07495 -12.98210 -12.82620 -12.69090 -12.45462 -12.38139 -12.07886 -11.96763 -11.79462 -11.63091 -11.47732 -11.13978 -11.00366 -10.40910 -10.22235 -10.16945 -9.68998 -9.22722 -8.38821 -6.00005 1.32602 1.38650 1.41736 1.47332 1.47889 1.79219 2.00612 2.26053 2.38209 2.77774 3.18162 3.22284 3.31803 3.37871 3.56628 3.67840 3.84761 3.98155 4.06362 4.12161 4.17840 4.27014 4.40167 4.46238 4.47896 4.54928 4.63637 4.69652 4.78438 4.81344 4.83416 4.97809 5.02693 5.05659 5.14928 5.19637 5.38842 5.39697 5.55433 5.65430 5.91359 5.94116 6.10217 6.38293 6.49247 6.62699 6.91599 7.03164 7.14468 7.43510 8.01306 8.78963 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035680 B = 0.001906 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.556371 B =14685.275183 C =15200.797769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.145 3.855 3 H 0.066 0.934 4 C 0.087 3.913 5 H 0.118 0.882 6 N -0.678 5.678 7 C 0.066 3.934 8 C 0.446 3.554 9 O -0.618 6.618 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.052 0.948 13 C -0.019 4.019 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.255 1.255 17 H -0.227 1.227 18 H -0.280 1.280 19 C -0.163 4.163 20 C 0.095 3.905 21 N -0.605 5.605 22 C 0.515 3.485 23 O -0.580 6.580 24 C 0.119 3.881 25 H 0.143 0.857 26 C -0.110 4.110 27 C -0.144 4.144 28 C 0.509 3.491 29 O -0.589 6.589 30 N -0.716 5.716 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.347 0.653 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.278 0.722 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.149 0.851 45 H 0.112 0.888 46 H 0.140 0.860 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.422 -5.864 -22.821 32.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.024 4.024 5 H 0.136 0.864 6 N -0.310 5.310 7 C -0.066 4.066 8 C 0.234 3.766 9 O -0.502 6.502 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.070 0.930 13 C -0.217 4.217 14 N -0.578 5.578 15 Si 0.788 3.212 16 H -0.179 1.179 17 H -0.150 1.150 18 H -0.205 1.205 19 C -0.202 4.202 20 C -0.026 4.026 21 N -0.338 5.338 22 C 0.303 3.697 23 O -0.459 6.459 24 C 0.011 3.989 25 H 0.160 0.840 26 C -0.148 4.148 27 C -0.183 4.183 28 C 0.297 3.703 29 O -0.470 6.470 30 N -0.369 5.369 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.227 0.773 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.131 0.869 46 H 0.158 0.842 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 21.146 -4.456 -23.505 31.929 hybrid contribution -0.865 -0.525 0.827 1.307 sum 20.280 -4.980 -22.677 30.828 Atomic orbital electron populations 1.21799 0.95915 1.01291 1.01246 1.21392 0.94024 0.95881 0.84656 0.91562 1.22659 0.94388 0.95931 0.89393 0.86389 1.59958 1.13910 1.56650 1.00469 1.21646 0.93962 1.03590 0.87438 1.21150 0.90855 0.80875 0.83710 1.90563 1.23518 1.54649 1.81496 1.42015 1.08638 1.65808 1.06798 1.18988 0.89997 1.48347 0.88458 0.93018 1.26187 1.04678 0.96280 0.94577 1.69821 1.35843 1.49492 1.02650 0.85325 0.76727 0.80125 0.79055 1.17942 1.14981 1.20491 1.23589 1.03236 0.96719 0.96685 1.22734 0.96021 0.88498 0.95355 1.48616 1.50229 1.31022 1.03964 1.20907 0.80476 0.84997 0.83303 1.90750 1.40519 1.30881 1.83796 1.21886 0.94496 1.00879 0.81666 0.84010 1.22736 0.91746 1.04992 0.95316 1.22430 0.92136 1.07586 0.96193 1.21752 0.90812 0.73736 0.83973 1.90739 1.84035 1.51357 1.20846 1.46213 1.10151 1.71675 1.08841 0.91726 0.94323 0.93241 0.83302 0.86555 0.89411 0.77335 0.91246 0.86787 0.91323 0.87248 0.87515 0.90374 0.83345 0.86940 0.84219 0.75409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.19 71.98 0.59 -3.07 16 2 C 0.14 2.68 3.48 45.34 0.16 2.84 16 3 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 4 C 0.09 1.24 3.11 46.11 0.14 1.38 16 5 H 0.12 1.23 7.89 -2.39 -0.02 1.21 16 6 N -0.68 -16.21 4.49 -489.43 -2.20 -18.41 16 7 C 0.07 1.61 6.02 85.56 0.52 2.13 16 8 C 0.45 18.59 7.82 87.65 0.69 19.27 16 9 O -0.62 -32.89 15.78 -3.07 -0.05 -32.94 16 10 N -0.59 -26.13 5.09 -306.98 -1.56 -27.69 16 11 C -0.33 -18.73 10.16 84.04 0.85 -17.88 16 12 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 13 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 14 N -0.94 -55.79 13.96 21.66 0.30 -55.48 16 15 Si 0.97 36.91 27.74 68.60 1.90 38.81 16 16 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 17 H -0.23 -7.03 6.52 99.48 0.65 -6.38 16 18 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 19 C -0.16 -1.18 6.63 31.99 0.21 -0.97 16 20 C 0.10 0.30 6.69 86.85 0.58 0.88 16 21 N -0.60 -7.68 3.08 -788.04 -2.43 -10.11 16 22 C 0.52 8.54 6.83 87.66 0.60 9.14 16 23 O -0.58 -16.13 15.45 -3.04 -0.05 -16.18 16 24 C 0.12 1.00 3.28 44.70 0.15 1.15 16 25 H 0.14 0.20 7.04 -2.39 -0.02 0.18 16 26 C -0.11 -0.28 6.67 31.65 0.21 -0.07 16 27 C -0.14 -0.86 6.86 30.59 0.21 -0.65 16 28 C 0.51 9.11 8.43 87.90 0.74 9.85 16 29 O -0.59 -16.82 18.03 -3.02 -0.05 -16.87 16 30 N -0.72 -11.18 5.46 -442.98 -2.42 -13.60 16 31 H 0.06 1.94 7.40 -2.39 -0.02 1.92 16 32 H 0.04 1.13 6.77 -2.39 -0.02 1.11 16 33 H 0.05 1.21 7.88 -2.39 -0.02 1.19 16 34 H 0.35 9.36 7.25 -89.69 -0.65 8.71 16 35 H 0.12 2.32 8.09 -2.38 -0.02 2.30 16 36 H 0.09 1.52 8.13 -2.39 -0.02 1.50 16 37 H 0.39 13.86 5.76 -92.71 -0.53 13.33 16 38 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.07 0.72 7.81 -2.39 -0.02 0.71 16 41 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.11 -0.19 6.99 -2.38 -0.02 -0.21 16 43 H 0.08 0.44 7.91 -2.39 -0.02 0.43 16 44 H 0.15 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.14 0.05 8.14 -2.38 -0.02 0.03 16 47 H 0.41 7.42 8.94 -92.71 -0.83 6.60 16 Total: -1.00 -94.42 381.89 -1.48 -95.90 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -1.04 Total: 33.13 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 6.11 Total: 23.43 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -8.31 Total: -125.29 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -0.15 Total: -65.99 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 1.90 Total: 38.81 kcal Total: -94.42 -1.48 -95.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179967770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.132 kcal (2) G-P(sol) polarization free energy of solvation -94.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds