Wall clock time and date at job start Tue Mar 31 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 6 6 N 1.46506 * 110.71951 * 338.86552 * 4 2 1 7 7 C 1.36932 * 120.00239 * 204.99891 * 6 4 2 8 8 H 1.08007 * 120.00181 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00490 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99621 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00444 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47349 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47071 * 120.00156 * 11 9 7 14 14 H 1.48500 * 109.47352 * 240.00277 * 11 9 7 15 15 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 16 16 C 1.54915 * 101.57970 * 35.50676 * 15 4 2 17 17 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 18 18 C 1.34778 * 125.65105 * 59.55700 * 17 2 1 19 19 O 1.21280 * 119.99826 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00118 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.46961 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47131 * 180.02562 * 21 20 18 23 23 N 1.46500 * 109.47027 * 179.97438 * 22 21 20 24 24 C 1.34770 * 124.17916 * 269.72166 * 23 22 21 25 25 O 1.21234 * 127.15531 * 0.02562 * 24 23 22 26 26 C 1.51578 * 105.68460 * 179.97438 * 24 23 22 27 27 N 1.47311 * 103.59603 * 0.32162 * 26 24 23 28 28 C 1.33793 * 124.17729 * 90.02472 * 23 22 21 29 29 O 1.21541 * 123.76855 * 359.96422 * 28 23 22 30 30 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 33 33 H 0.97003 * 119.99638 * 24.99242 * 6 4 2 34 34 H 0.97001 * 120.00085 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00863 * 277.43010 * 15 4 2 36 36 H 1.09001 * 111.03956 * 153.59240 * 15 4 2 37 37 H 1.08998 * 110.36803 * 204.15086 * 16 15 4 38 38 H 1.09004 * 110.45685 * 81.87310 * 16 15 4 39 39 H 1.08998 * 109.47243 * 299.99822 * 20 18 17 40 40 H 1.08994 * 109.47245 * 60.00184 * 20 18 17 41 41 H 1.09003 * 109.47283 * 299.99771 * 21 20 18 42 42 H 1.08994 * 109.47665 * 59.99889 * 21 20 18 43 43 H 1.08998 * 109.47153 * 299.99685 * 22 21 20 44 44 H 1.09004 * 109.47198 * 59.99965 * 22 21 20 45 45 H 1.09004 * 110.76880 * 241.71464 * 26 24 23 46 46 H 1.09003 * 110.56389 * 118.83003 * 26 24 23 47 47 H 0.96999 * 126.69567 * 179.83494 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 1 2.9657 -0.2853 1.6179 6 7 1.0292 -0.8056 2.2865 7 6 1.3953 -0.9435 3.5987 8 1 2.4401 -1.0124 3.8636 9 6 0.4236 -0.9946 4.5887 10 7 -0.8497 -0.9111 4.2659 11 14 0.9228 -1.1834 6.3788 12 1 2.4030 -1.2550 6.4750 13 1 0.4327 -0.0163 7.1551 14 1 0.3298 -2.4285 6.9295 15 6 2.3519 -2.1704 0.6896 16 6 2.8569 -1.8488 -0.7392 17 7 2.0300 -0.7124 -1.1848 18 6 1.7754 -0.3812 -2.4662 19 8 1.0793 0.5796 -2.7173 20 6 2.3557 -1.2047 -3.5869 21 6 1.9172 -0.6185 -4.9304 22 6 2.5059 -1.4550 -6.0683 23 7 2.0855 -0.8940 -7.3547 24 6 0.9666 -1.2599 -8.0108 25 8 0.1488 -2.0836 -7.6609 26 6 0.9426 -0.4262 -9.2765 27 7 2.1696 0.3834 -9.1813 28 6 2.7680 0.0406 -8.0262 29 8 3.8127 0.5246 -7.6368 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5206 -0.8861 32 1 -0.3634 0.5071 0.8939 33 1 0.0909 -0.7440 2.0485 34 1 -1.5288 -0.9472 4.9576 35 1 1.4452 -2.7745 0.6568 36 1 3.1268 -2.6641 1.2759 37 1 2.7089 -2.7062 -1.3958 38 1 3.9094 -1.5663 -0.7167 39 1 3.4437 -1.1905 -3.5225 40 1 2.0003 -2.2318 -3.5049 41 1 0.8292 -0.6323 -4.9952 42 1 2.2730 0.4085 -5.0123 43 1 3.5939 -1.4416 -6.0039 44 1 2.1496 -2.4819 -5.9863 45 1 0.0612 0.2148 -9.3006 46 1 0.9735 -1.0670 -10.1577 47 1 2.4842 1.0371 -9.8252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180101180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:24 Heat of formation + Delta-G solvation = -58.242319 kcal Electronic energy + Delta-G solvation = -29232.120000 eV Core-core repulsion = 25030.403300 eV Total energy + Delta-G solvation = -4201.716700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72002 -40.02705 -38.97193 -37.67243 -36.50413 -35.97345 -34.18481 -33.12016 -31.60664 -30.67643 -29.18861 -28.31995 -27.28063 -25.20015 -23.87454 -23.31408 -22.99351 -22.09214 -20.74424 -19.55571 -18.64101 -18.40365 -17.56208 -17.51051 -17.18698 -16.72462 -16.06473 -15.96152 -15.69111 -15.19047 -15.01430 -14.62662 -14.50432 -14.46128 -14.15854 -13.90206 -13.63605 -13.30895 -12.99260 -12.83399 -12.38684 -12.30391 -12.14538 -11.91183 -11.73566 -11.53567 -11.31962 -11.20079 -11.07205 -10.96803 -10.82546 -10.67215 -10.45218 -10.22167 -10.19229 -9.98511 -9.98189 -9.73882 -9.46801 -8.96408 -8.37104 -7.03410 -5.82596 -3.12400 1.19368 1.75116 2.56987 2.66810 2.82138 3.18570 3.40382 3.46194 3.48421 3.52910 4.28880 4.43268 4.47085 4.54559 4.60732 4.67538 4.92601 4.94110 5.04730 5.06711 5.17616 5.26829 5.34284 5.34955 5.45652 5.56144 5.60573 5.65859 5.80777 5.84858 6.01546 6.07693 6.11470 6.24118 6.25895 6.33709 6.56019 6.58297 6.59795 6.72808 6.85287 6.92723 6.99457 7.65816 7.67339 7.80432 8.35231 8.38501 9.47496 10.02701 10.37664 11.39869 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.001893 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.786141 B =14786.398943 C =15004.239631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.526 3.474 19 O -0.544 6.544 20 C -0.132 4.132 21 C -0.120 4.120 22 C 0.118 3.882 23 N -0.575 5.575 24 C 0.519 3.481 25 O -0.465 6.465 26 C 0.062 3.938 27 N -0.731 5.731 28 C 0.701 3.299 29 O -0.539 6.539 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -2.101 -29.033 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.083 0.917 6 N -0.359 5.359 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.422 6.422 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.002 4.002 23 N -0.321 5.321 24 C 0.306 3.694 25 O -0.334 6.334 26 C -0.066 4.066 27 N -0.396 5.396 28 C 0.401 3.599 29 O -0.412 6.412 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.105 -1.824 -28.544 29.471 hybrid contribution 0.035 0.060 0.671 0.675 sum 7.141 -1.764 -27.872 28.827 Atomic orbital electron populations 1.21991 0.94624 1.02283 1.02669 1.21876 0.95400 0.95818 0.84635 0.91203 1.21180 0.93225 0.92022 0.87433 0.91657 1.42665 1.04513 1.86948 1.01807 1.19299 0.92600 1.42495 0.83108 0.90982 1.24770 0.95248 1.02654 0.98135 1.69673 0.98893 1.57030 1.32241 0.86097 0.77532 0.77264 0.85134 1.20510 1.21845 1.21860 1.23559 1.01659 1.01339 0.93029 1.22384 0.94529 0.88397 0.97282 1.48635 1.50206 1.30470 1.05088 1.20121 0.80862 0.85120 0.82427 1.90685 1.39027 1.29154 1.83343 1.21509 1.02514 1.00487 0.92759 1.21657 1.02234 1.00329 0.91610 1.21775 1.01655 0.97911 0.78889 1.46378 1.24329 1.38840 1.22592 1.20913 0.80455 0.82331 0.85683 1.90857 1.39837 1.31446 1.71252 1.22477 0.90411 0.95347 0.98327 1.45432 1.25328 1.45389 1.23432 1.15892 0.83389 0.79619 0.80997 1.91043 1.21835 1.57325 1.70983 0.92666 0.92238 0.90242 0.77123 0.93422 0.90726 0.90585 0.91342 0.91617 0.88636 0.88652 0.90505 0.90277 0.88313 0.88475 0.85770 0.85883 0.71423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.93 37.16 0.29 -2.74 16 2 C 0.13 2.27 3.48 -66.96 -0.23 2.04 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.32 3.48 -66.09 -0.23 3.09 16 5 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 6 N -0.72 -17.31 4.94 -51.65 -0.26 -17.57 16 7 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 11 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C -0.15 -2.47 6.77 -24.58 -0.17 -2.63 16 16 C 0.10 1.22 6.69 -2.52 -0.02 1.20 16 17 N -0.61 -9.28 3.08 -163.02 -0.50 -9.79 16 18 C 0.53 7.94 7.63 -10.99 -0.08 7.85 16 19 O -0.54 -10.21 14.88 5.56 0.08 -10.13 16 20 C -0.13 -1.34 4.71 -27.88 -0.13 -1.47 16 21 C -0.12 -1.25 4.83 -26.73 -0.13 -1.37 16 22 C 0.12 0.96 5.70 -4.04 -0.02 0.94 16 23 N -0.58 -4.79 2.60 -120.73 -0.31 -5.11 16 24 C 0.52 3.90 8.31 -10.56 -0.09 3.82 16 25 O -0.46 -4.98 17.75 5.60 0.10 -4.88 16 26 C 0.06 0.19 7.97 -4.32 -0.03 0.15 16 27 N -0.73 -3.26 6.58 -65.73 -0.43 -3.70 16 28 C 0.70 6.16 8.62 -88.02 -0.76 5.40 16 29 O -0.54 -6.78 17.48 5.33 0.09 -6.68 16 30 H 0.05 1.08 8.01 -51.93 -0.42 0.66 16 31 H 0.06 1.15 6.75 -51.93 -0.35 0.80 16 32 H 0.08 1.67 6.82 -51.93 -0.35 1.31 16 33 H 0.39 10.04 5.06 -40.82 -0.21 9.83 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.10 0.73 7.86 -51.93 -0.41 0.32 16 44 H 0.10 0.67 8.00 -51.93 -0.42 0.26 16 45 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.12 0.06 8.14 -51.93 -0.42 -0.37 16 47 H 0.44 0.94 8.96 -40.82 -0.37 0.57 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -36.42 387.04 -8.62 -45.04 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.08 Total: 7.76 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -1.85 Total: 9.16 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.78 Total: -63.04 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.28 Total: -21.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.42 -8.62 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180101180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.207 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds