Wall clock time and date at job start Tue Mar 31 2020 21:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.38571 * 2 1 4 4 C 1.54789 * 110.52530 * 237.82717 * 2 1 3 5 5 N 1.48149 * 104.41852 * 265.22505 * 4 2 1 6 6 C 1.34768 * 127.83995 * 140.36661 * 5 4 2 7 7 O 1.21280 * 120.00524 * 179.68409 * 6 5 4 8 8 C 1.50707 * 120.00131 * 359.68066 * 6 5 4 9 9 C 1.52999 * 109.47230 * 179.97438 * 8 6 5 10 10 H 1.08994 * 110.53188 * 52.17055 * 9 8 6 11 11 N 1.47311 * 110.72872 * 289.25036 * 9 8 6 12 12 C 1.34528 * 106.62000 * 241.41159 * 11 9 8 13 13 O 1.21538 * 123.76976 * 180.02562 * 12 11 9 14 14 N 1.33788 * 112.45954 * 359.97438 * 12 11 9 15 15 C 1.34774 * 111.64139 * 0.02562 * 14 12 11 16 16 O 1.21236 * 127.15383 * 180.02562 * 15 14 12 17 17 C 1.48144 * 104.32006 * 320.11147 * 5 4 2 18 18 C 1.54280 * 110.33826 * 122.23164 * 2 1 3 19 19 C 1.52994 * 110.34789 * 0.02562 * 18 2 1 20 20 C 1.52998 * 110.34173 * 237.74312 * 18 2 1 21 21 N 1.46504 * 109.47354 * 183.01422 * 20 18 2 22 22 C 1.36935 * 119.99880 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00216 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99842 * 179.97438 * 22 21 20 25 25 N 1.31612 * 119.99988 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99771 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47149 * 90.00232 * 26 24 22 28 28 H 1.48501 * 109.46972 * 209.99452 * 26 24 22 29 29 H 1.48498 * 109.47639 * 329.99840 * 26 24 22 30 30 H 1.08998 * 109.47721 * 297.76874 * 1 2 3 31 31 H 1.09001 * 109.46887 * 57.77197 * 1 2 3 32 32 H 1.08998 * 109.47299 * 177.76533 * 1 2 3 33 33 H 1.08999 * 110.54203 * 146.48689 * 4 2 1 34 34 H 1.08999 * 110.46371 * 23.92455 * 4 2 1 35 35 H 1.09008 * 109.46380 * 59.99919 * 8 6 5 36 36 H 1.08997 * 109.47399 * 300.00307 * 8 6 5 37 37 H 0.97005 * 126.69472 * 61.43349 * 11 9 8 38 38 H 0.96999 * 124.18211 * 180.26418 * 14 12 11 39 39 H 1.09001 * 110.40566 * 158.63051 * 17 5 4 40 40 H 1.09002 * 110.40716 * 280.93822 * 17 5 4 41 41 H 1.09001 * 109.47406 * 176.99230 * 19 18 2 42 42 H 1.09010 * 109.47188 * 296.99355 * 19 18 2 43 43 H 1.09005 * 109.47399 * 56.98956 * 19 18 2 44 44 H 1.09005 * 109.47171 * 303.00882 * 20 18 2 45 45 H 1.08992 * 109.47501 * 63.01045 * 20 18 2 46 46 H 0.96994 * 119.99658 * 359.97438 * 21 20 18 47 47 H 0.97006 * 120.00319 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0728 -0.7719 -1.2270 5 7 2.3140 -2.1438 -0.7227 6 6 2.0774 -3.3105 -1.3545 7 8 2.3360 -4.3607 -0.8058 8 6 1.4914 -3.3102 -2.7430 9 6 1.3252 -4.7521 -3.2267 10 1 0.7752 -5.3407 -2.4925 11 7 2.6364 -5.3635 -3.5041 12 6 2.6435 -5.6825 -4.8110 13 8 3.5838 -6.2092 -5.3727 14 7 1.4994 -5.3562 -5.4230 15 6 0.6246 -4.7867 -4.5705 16 8 -0.4910 -4.3862 -4.8252 17 6 2.8801 -1.9422 0.6314 18 6 2.0663 -0.7715 1.2237 19 6 0.9061 -1.3040 2.0670 20 6 2.9690 0.1306 2.0675 21 7 3.5244 -0.6400 3.1829 22 6 4.3676 -0.0380 4.0782 23 1 4.6235 1.0048 3.9620 24 6 4.8933 -0.7680 5.1354 25 7 5.7041 -0.1896 5.9957 26 14 4.4511 -2.5718 5.3361 27 1 5.4315 -3.4070 4.5967 28 1 4.4813 -2.9315 6.7765 29 1 3.0892 -2.8109 4.7945 30 1 -0.3634 0.4788 0.9093 31 1 -0.3633 0.5481 -0.8694 32 1 -0.3634 -1.0269 -0.0401 33 1 3.0039 -0.3267 -1.5777 34 1 1.3322 -0.7857 -2.0267 35 1 2.1588 -2.7752 -3.4188 36 1 0.5193 -2.8175 -2.7270 37 1 3.3547 -5.5082 -2.8683 38 1 1.3203 -5.5134 -6.3632 39 1 2.7494 -2.8400 1.2356 40 1 3.9359 -1.6791 0.5666 41 1 1.2996 -1.8910 2.8969 42 1 0.3261 -0.4673 2.4566 43 1 0.2659 -1.9331 1.4484 44 1 3.7818 0.5119 1.4491 45 1 2.3865 0.9654 2.4570 46 1 3.2947 -1.5766 3.2870 47 1 6.0719 -0.6998 6.7343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181763165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:43 Heat of formation + Delta-G solvation = -61.576612 kcal Electronic energy + Delta-G solvation = -30248.114096 eV Core-core repulsion = 26046.252810 eV Total energy + Delta-G solvation = -4201.861286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.83597 -40.58277 -39.09061 -38.67521 -36.61350 -35.10398 -34.48132 -33.36022 -31.72971 -31.41429 -30.07103 -27.83795 -26.67157 -25.74541 -25.08583 -23.21284 -23.01744 -21.94655 -21.19047 -19.66651 -18.87639 -18.77148 -17.94781 -17.33479 -17.12614 -17.02614 -16.40683 -16.15454 -15.84238 -15.49724 -15.00054 -14.68389 -14.61193 -14.28082 -14.23874 -14.07396 -13.74448 -13.48382 -13.38068 -12.94405 -12.63940 -12.55018 -12.38402 -12.16258 -11.80163 -11.56053 -11.53231 -11.50424 -11.35801 -10.89950 -10.87454 -10.80194 -10.55958 -10.50458 -10.31120 -10.14830 -10.05517 -9.93785 -9.60545 -8.95365 -8.87014 -7.27888 -5.80519 -3.16414 1.04771 1.96001 2.30529 2.50812 2.56764 2.80954 3.35062 3.38271 3.44164 3.45733 3.94077 4.14847 4.33116 4.36878 4.55975 4.58549 4.67885 4.82120 4.91416 5.06574 5.08695 5.19254 5.26058 5.29529 5.39730 5.50605 5.52133 5.57884 5.65274 5.70636 5.78366 5.84986 5.89219 5.99790 6.04696 6.21795 6.35321 6.36392 6.44956 6.46918 6.56903 6.63381 6.86023 7.33161 7.70763 7.83437 7.94713 8.38254 9.16913 9.89324 10.08278 11.37798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002792 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.664281 B =10027.371645 C =11099.912202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.092 0.908 4 C 0.101 3.899 5 N -0.615 5.615 6 C 0.536 3.464 7 O -0.541 6.541 8 C -0.140 4.140 9 C 0.108 3.892 10 H 0.140 0.860 11 N -0.711 5.711 12 C 0.701 3.299 13 O -0.543 6.543 14 N -0.679 5.679 15 C 0.531 3.469 16 O -0.464 6.464 17 C 0.115 3.885 18 C -0.080 4.080 19 C -0.134 4.134 20 C 0.173 3.827 21 N -0.754 5.754 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.448 0.552 38 H 0.434 0.566 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.032 0.968 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 -4.324 -22.779 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.022 4.022 5 N -0.348 5.348 6 C 0.324 3.676 7 O -0.419 6.419 8 C -0.181 4.181 9 C -0.002 4.002 10 H 0.158 0.842 11 N -0.377 5.377 12 C 0.400 3.600 13 O -0.417 6.417 14 N -0.351 5.351 15 C 0.316 3.684 16 O -0.332 6.332 17 C -0.006 4.006 18 C -0.081 4.081 19 C -0.191 4.191 20 C 0.045 3.955 21 N -0.400 5.400 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.294 0.706 38 H 0.276 0.724 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.215 -4.854 -22.767 26.768 hybrid contribution 0.028 -1.292 0.198 1.307 sum -13.188 -6.146 -22.568 26.852 Atomic orbital electron populations 1.21920 0.94318 1.01865 1.01932 1.22196 0.96359 0.99712 0.93331 0.89003 1.22681 1.00906 0.81551 0.97063 1.48961 1.62395 1.05355 1.18127 1.19765 0.78482 0.82574 0.86777 1.90747 1.53247 1.30212 1.67699 1.21863 1.05045 0.95498 0.95695 1.21790 0.85707 0.96313 0.96347 0.84247 1.45653 1.18373 1.64288 1.09342 1.15908 0.82377 0.79060 0.82614 1.91077 1.35671 1.46616 1.68303 1.44315 1.16651 1.58903 1.15184 1.20725 0.84845 0.75754 0.87086 1.90871 1.16514 1.44685 1.81162 1.22558 0.97649 0.98888 0.81531 1.21769 0.96259 0.95218 0.94845 1.21892 0.96997 1.00966 0.99224 1.20695 0.93564 0.92705 0.88522 1.42732 1.57204 1.09923 1.30176 1.19027 1.18725 0.96639 1.03099 0.89204 1.24657 0.99307 0.97529 0.97458 1.69694 1.35758 1.35799 1.16841 0.86615 0.78177 0.86861 0.77244 1.20962 1.21670 1.20341 0.91684 0.92923 0.92448 0.90432 0.90260 0.87542 0.86131 0.70575 0.72407 0.89917 0.89931 0.92253 0.91983 0.93020 0.95281 0.95054 0.80554 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.94 37.16 0.30 -0.85 16 2 C -0.10 -0.89 3.31 -89.00 -0.29 -1.18 16 3 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 4 C 0.10 0.78 6.49 -2.19 -0.01 0.77 16 5 N -0.62 -6.42 3.31 -169.06 -0.56 -6.98 16 6 C 0.54 5.46 7.84 -10.99 -0.09 5.38 16 7 O -0.54 -7.30 15.51 5.56 0.09 -7.21 16 8 C -0.14 -0.88 4.43 -27.88 -0.12 -1.00 16 9 C 0.11 0.72 3.13 -68.21 -0.21 0.51 16 10 H 0.14 0.91 7.89 -51.93 -0.41 0.50 16 11 N -0.71 -5.53 5.97 -59.20 -0.35 -5.88 16 12 C 0.70 6.24 8.99 -88.02 -0.79 5.45 16 13 O -0.54 -6.91 18.04 5.33 0.10 -6.82 16 14 N -0.68 -4.32 5.70 -15.79 -0.09 -4.41 16 15 C 0.53 3.67 8.14 -10.55 -0.09 3.58 16 16 O -0.46 -4.29 18.02 5.60 0.10 -4.19 16 17 C 0.12 1.57 5.54 -2.41 -0.01 1.56 16 18 C -0.08 -1.03 0.73 -153.12 -0.11 -1.14 16 19 C -0.13 -1.78 7.08 37.15 0.26 -1.52 16 20 C 0.17 2.94 4.85 -4.04 -0.02 2.92 16 21 N -0.75 -16.73 4.93 -59.91 -0.30 -17.02 16 22 C -0.25 -6.68 10.47 -15.06 -0.16 -6.84 16 23 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 26 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 30 H 0.06 0.57 6.89 -51.93 -0.36 0.21 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.48 6.72 -51.93 -0.35 0.13 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.42 7.04 -51.93 -0.37 0.05 16 35 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.12 0.57 7.96 -51.93 -0.41 0.16 16 37 H 0.45 3.73 8.49 -40.82 -0.35 3.38 16 38 H 0.43 1.91 8.96 -40.82 -0.37 1.54 16 39 H 0.08 1.30 7.60 -51.93 -0.39 0.91 16 40 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 41 H 0.06 0.94 7.01 -51.93 -0.36 0.58 16 42 H 0.06 0.79 6.98 -51.92 -0.36 0.43 16 43 H 0.05 0.61 6.61 -51.93 -0.34 0.27 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.36 7.95 4.14 -40.82 -0.17 7.78 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -35.19 377.33 -7.47 -42.66 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.75 Total: 7.43 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.45 Total: 7.72 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.52 Total: -62.43 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.28 Total: -18.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.19 -7.47 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181763165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.914 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds