Wall clock time and date at job start Tue Mar 31 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.38571 * 2 1 4 4 C 1.54789 * 110.52530 * 237.82717 * 2 1 3 5 5 N 1.48149 * 104.41852 * 265.22505 * 4 2 1 6 6 C 1.34768 * 127.83995 * 140.36661 * 5 4 2 7 7 O 1.21280 * 120.00524 * 179.68409 * 6 5 4 8 8 C 1.50707 * 120.00131 * 359.68066 * 6 5 4 9 9 C 1.52999 * 109.47230 * 179.97438 * 8 6 5 10 10 H 1.08994 * 110.53188 * 52.17055 * 9 8 6 11 11 N 1.47311 * 110.72872 * 289.25036 * 9 8 6 12 12 C 1.34528 * 106.62000 * 241.41159 * 11 9 8 13 13 O 1.21538 * 123.76976 * 180.02562 * 12 11 9 14 14 N 1.33788 * 112.45954 * 359.97438 * 12 11 9 15 15 C 1.34774 * 111.64139 * 0.02562 * 14 12 11 16 16 O 1.21236 * 127.15383 * 180.02562 * 15 14 12 17 17 C 1.48144 * 104.32006 * 320.11147 * 5 4 2 18 18 C 1.54280 * 110.33826 * 122.23164 * 2 1 3 19 19 C 1.52994 * 110.34789 * 0.02562 * 18 2 1 20 20 C 1.52998 * 110.34173 * 237.74312 * 18 2 1 21 21 N 1.46504 * 109.47354 * 183.01422 * 20 18 2 22 22 C 1.36935 * 119.99880 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00216 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99842 * 179.97438 * 22 21 20 25 25 N 1.31612 * 119.99988 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99771 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47149 * 90.00232 * 26 24 22 28 28 H 1.48501 * 109.46972 * 209.99452 * 26 24 22 29 29 H 1.48498 * 109.47639 * 329.99840 * 26 24 22 30 30 H 1.08998 * 109.47721 * 297.76874 * 1 2 3 31 31 H 1.09001 * 109.46887 * 57.77197 * 1 2 3 32 32 H 1.08998 * 109.47299 * 177.76533 * 1 2 3 33 33 H 1.08999 * 110.54203 * 146.48689 * 4 2 1 34 34 H 1.08999 * 110.46371 * 23.92455 * 4 2 1 35 35 H 1.09008 * 109.46380 * 59.99919 * 8 6 5 36 36 H 1.08997 * 109.47399 * 300.00307 * 8 6 5 37 37 H 0.97005 * 126.69472 * 61.43349 * 11 9 8 38 38 H 0.96999 * 124.18211 * 180.26418 * 14 12 11 39 39 H 1.09001 * 110.40566 * 158.63051 * 17 5 4 40 40 H 1.09002 * 110.40716 * 280.93822 * 17 5 4 41 41 H 1.09001 * 109.47406 * 176.99230 * 19 18 2 42 42 H 1.09010 * 109.47188 * 296.99355 * 19 18 2 43 43 H 1.09005 * 109.47399 * 56.98956 * 19 18 2 44 44 H 1.09005 * 109.47171 * 303.00882 * 20 18 2 45 45 H 1.08992 * 109.47501 * 63.01045 * 20 18 2 46 46 H 0.96994 * 119.99658 * 359.97438 * 21 20 18 47 47 H 0.97006 * 120.00319 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0728 -0.7719 -1.2270 5 7 2.3140 -2.1438 -0.7227 6 6 2.0774 -3.3105 -1.3545 7 8 2.3360 -4.3607 -0.8058 8 6 1.4914 -3.3102 -2.7430 9 6 1.3252 -4.7521 -3.2267 10 1 0.7752 -5.3407 -2.4925 11 7 2.6364 -5.3635 -3.5041 12 6 2.6435 -5.6825 -4.8110 13 8 3.5838 -6.2092 -5.3727 14 7 1.4994 -5.3562 -5.4230 15 6 0.6246 -4.7867 -4.5705 16 8 -0.4910 -4.3862 -4.8252 17 6 2.8801 -1.9422 0.6314 18 6 2.0663 -0.7715 1.2237 19 6 0.9061 -1.3040 2.0670 20 6 2.9690 0.1306 2.0675 21 7 3.5244 -0.6400 3.1829 22 6 4.3676 -0.0380 4.0782 23 1 4.6235 1.0048 3.9620 24 6 4.8933 -0.7680 5.1354 25 7 5.7041 -0.1896 5.9957 26 14 4.4511 -2.5718 5.3361 27 1 5.4315 -3.4070 4.5967 28 1 4.4813 -2.9315 6.7765 29 1 3.0892 -2.8109 4.7945 30 1 -0.3634 0.4788 0.9093 31 1 -0.3633 0.5481 -0.8694 32 1 -0.3634 -1.0269 -0.0401 33 1 3.0039 -0.3267 -1.5777 34 1 1.3322 -0.7857 -2.0267 35 1 2.1588 -2.7752 -3.4188 36 1 0.5193 -2.8175 -2.7270 37 1 3.3547 -5.5082 -2.8683 38 1 1.3203 -5.5134 -6.3632 39 1 2.7494 -2.8400 1.2356 40 1 3.9359 -1.6791 0.5666 41 1 1.2996 -1.8910 2.8969 42 1 0.3261 -0.4673 2.4566 43 1 0.2659 -1.9331 1.4484 44 1 3.7818 0.5119 1.4491 45 1 2.3865 0.9654 2.4570 46 1 3.2947 -1.5766 3.2870 47 1 6.0719 -0.6998 6.7343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181763165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:42 Heat of formation + Delta-G solvation = -90.498263 kcal Electronic energy + Delta-G solvation = -30249.368233 eV Core-core repulsion = 26046.252810 eV Total energy + Delta-G solvation = -4203.115423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.46517 -41.45909 -39.79683 -39.56628 -37.36155 -36.62848 -35.08536 -34.60297 -33.29542 -32.14945 -31.35264 -28.73445 -27.82142 -26.63429 -26.02844 -24.61714 -23.79311 -22.62572 -22.31648 -20.49224 -20.17915 -19.48826 -19.26508 -18.23411 -17.87287 -17.66860 -17.23971 -16.89539 -16.63893 -16.48283 -16.29566 -15.90077 -15.51308 -15.31469 -15.28291 -15.12041 -14.82287 -14.61351 -14.28323 -14.10935 -13.80145 -13.56404 -13.41153 -13.21090 -12.92385 -12.89482 -12.60398 -12.51244 -12.35329 -12.25277 -12.08868 -11.86946 -11.53430 -11.50724 -11.48358 -11.42907 -11.20967 -11.00420 -10.93071 -10.60399 -9.73914 -9.27739 -8.03525 -5.35003 0.44544 1.34911 1.36329 1.36933 1.43408 1.54939 1.79705 1.90969 2.15011 2.45765 2.86097 3.28700 3.33171 3.39390 3.56600 3.70068 3.78649 3.85745 3.99008 4.24952 4.27975 4.31917 4.34381 4.42900 4.55717 4.60940 4.67405 4.73887 4.80269 4.85310 4.93842 5.03477 5.04777 5.07598 5.08658 5.13925 5.28758 5.39468 5.45336 5.62858 5.69723 5.77018 5.83997 6.21130 6.29948 6.56442 7.04186 7.06029 7.08354 7.85865 8.02429 9.18234 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002792 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.664281 B =10027.371645 C =11099.912202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.102 3.898 5 N -0.614 5.614 6 C 0.532 3.468 7 O -0.580 6.580 8 C -0.128 4.128 9 C 0.109 3.891 10 H 0.144 0.856 11 N -0.707 5.707 12 C 0.705 3.295 13 O -0.585 6.585 14 N -0.666 5.666 15 C 0.546 3.454 16 O -0.480 6.480 17 C 0.117 3.883 18 C -0.072 4.072 19 C -0.129 4.129 20 C 0.169 3.831 21 N -0.757 5.757 22 C -0.226 4.226 23 H 0.062 0.938 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.943 3.057 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.255 1.255 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.446 0.554 38 H 0.443 0.557 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.363 0.637 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -4.316 -25.539 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.118 0.882 4 C -0.020 4.020 5 N -0.346 5.346 6 C 0.323 3.677 7 O -0.460 6.460 8 C -0.168 4.168 9 C 0.000 4.000 10 H 0.161 0.839 11 N -0.372 5.372 12 C 0.405 3.595 13 O -0.461 6.461 14 N -0.338 5.338 15 C 0.332 3.668 16 O -0.350 6.350 17 C -0.006 4.006 18 C -0.074 4.074 19 C -0.186 4.186 20 C 0.043 3.957 21 N -0.403 5.403 22 C -0.357 4.357 23 H 0.080 0.920 24 C -0.252 4.252 25 N -0.634 5.634 26 Si 0.772 3.228 27 H -0.208 1.208 28 H -0.222 1.222 29 H -0.180 1.180 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.291 0.709 38 H 0.287 0.713 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.197 0.803 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.749 -4.816 -25.592 30.433 hybrid contribution 0.789 -1.200 1.026 1.765 sum -14.960 -6.016 -24.566 29.385 Atomic orbital electron populations 1.21894 0.92883 1.02132 1.02772 1.22208 0.97452 0.99682 0.91721 0.88247 1.22897 1.02504 0.79470 0.97135 1.48989 1.62052 1.06775 1.16821 1.20459 0.77692 0.81734 0.87858 1.90739 1.54757 1.31620 1.68897 1.21869 1.06559 0.95416 0.93006 1.21865 0.84953 0.96861 0.96321 0.83863 1.45687 1.18752 1.63837 1.08888 1.15934 0.82295 0.78531 0.82763 1.91054 1.37286 1.48579 1.69203 1.44147 1.15686 1.58230 1.15689 1.20537 0.84319 0.75113 0.86866 1.90882 1.17185 1.45609 1.81361 1.22269 0.97082 0.97840 0.83425 1.21638 0.95225 0.94768 0.95734 1.21852 0.97207 1.00997 0.98521 1.20899 0.94177 0.93149 0.87502 1.42780 1.56521 1.10319 1.30638 1.19053 1.17974 0.95466 1.03219 0.92042 1.25388 1.00142 1.01947 0.97761 1.69859 1.37998 1.37582 1.17971 0.85583 0.78955 0.81556 0.76742 1.20848 1.22225 1.18006 0.92584 0.90307 0.92553 0.89510 0.86439 0.85441 0.83404 0.70885 0.71251 0.92572 0.91707 0.95329 0.91406 0.91283 0.95081 0.95098 0.80335 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.94 71.98 0.57 -1.08 16 2 C -0.09 -1.36 3.31 -9.75 -0.03 -1.40 16 3 H 0.10 1.40 7.71 -2.39 -0.02 1.38 16 4 C 0.10 1.14 6.49 86.67 0.56 1.70 16 5 N -0.61 -11.15 3.31 -807.17 -2.67 -13.83 16 6 C 0.53 9.45 7.84 87.66 0.69 10.13 16 7 O -0.58 -14.93 15.51 -3.03 -0.05 -14.97 16 8 C -0.13 -1.08 4.43 29.85 0.13 -0.95 16 9 C 0.11 1.15 3.13 44.37 0.14 1.29 16 10 H 0.14 1.51 7.89 -2.39 -0.02 1.49 16 11 N -0.71 -9.81 5.97 -459.62 -2.74 -12.55 16 12 C 0.71 11.49 8.99 179.44 1.61 13.10 16 13 O -0.58 -14.52 18.04 -3.83 -0.07 -14.59 16 14 N -0.67 -6.99 5.70 -441.12 -2.52 -9.50 16 15 C 0.55 5.91 8.14 87.94 0.72 6.62 16 16 O -0.48 -7.32 18.02 -2.89 -0.05 -7.37 16 17 C 0.12 3.08 5.54 86.53 0.48 3.56 16 18 C -0.07 -1.76 0.73 -51.28 -0.04 -1.80 16 19 C -0.13 -3.24 7.08 71.98 0.51 -2.73 16 20 C 0.17 5.66 4.85 86.38 0.42 6.08 16 21 N -0.76 -33.71 4.93 -343.45 -1.69 -35.40 16 22 C -0.23 -12.59 10.47 84.04 0.88 -11.71 16 23 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 24 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 25 N -0.98 -62.88 13.97 21.65 0.30 -62.58 16 26 Si 0.94 46.04 27.74 68.60 1.90 47.94 16 27 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 30 H 0.06 0.79 6.89 -2.39 -0.02 0.77 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.70 6.72 -2.39 -0.02 0.68 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.49 7.04 -2.39 -0.02 0.48 16 35 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.15 0.56 7.96 -2.39 -0.02 0.54 16 37 H 0.45 6.98 8.49 -92.70 -0.79 6.19 16 38 H 0.44 2.97 8.96 -92.71 -0.83 2.14 16 39 H 0.06 1.77 7.60 -2.39 -0.02 1.75 16 40 H 0.06 1.91 7.87 -2.39 -0.02 1.89 16 41 H 0.03 0.88 7.01 -2.39 -0.02 0.86 16 42 H 0.07 1.61 6.98 -2.38 -0.02 1.59 16 43 H 0.07 1.49 6.61 -2.38 -0.02 1.47 16 44 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.36 15.95 4.14 -92.71 -0.38 15.56 16 47 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -79.60 377.33 -1.50 -81.10 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -1.02 Total: 22.05 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.11 Total: 19.72 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -9.32 Total: -133.86 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.17 Total: -36.94 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -79.60 -1.50 -81.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181763165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.401 kcal (2) G-P(sol) polarization free energy of solvation -79.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds