Wall clock time and date at job start Tue Mar 31 2020 21:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.30435 * 2 1 4 4 C 1.54397 * 110.33932 * 237.83162 * 2 1 3 5 5 N 1.48151 * 104.61301 * 217.15309 * 4 2 1 6 6 C 1.34775 * 127.83798 * 219.58380 * 5 4 2 7 7 O 1.21275 * 120.00151 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99866 * 0.02943 * 6 5 4 9 9 H 1.09000 * 109.46535 * 39.97442 * 8 6 5 10 10 C 1.53048 * 109.46019 * 279.99909 * 8 6 5 11 11 C 1.50804 * 109.18324 * 286.67888 * 10 8 6 12 12 O 1.21242 * 120.01713 * 145.74410 * 11 10 8 13 13 N 1.34561 * 119.96810 * 325.77186 * 11 10 8 14 14 C 1.34330 * 120.98801 * 4.43016 * 13 11 10 15 15 O 1.21540 * 119.21409 * 192.04339 * 14 13 11 16 16 N 1.34295 * 121.58194 * 12.02411 * 14 13 11 17 17 C 1.48144 * 104.32233 * 39.58575 * 5 4 2 18 18 C 1.54277 * 110.43637 * 122.23986 * 2 1 3 19 19 C 1.53004 * 110.34094 * 359.93995 * 18 2 1 20 20 C 1.52998 * 110.34542 * 237.78930 * 18 2 1 21 21 N 1.46500 * 109.47580 * 179.97438 * 20 18 2 22 22 C 1.36932 * 120.00557 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99429 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00158 * 179.97438 * 22 21 20 25 25 N 1.31609 * 120.00193 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99903 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47189 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47225 * 120.00302 * 26 24 22 29 29 H 1.48498 * 109.47484 * 240.00391 * 26 24 22 30 30 H 1.09005 * 109.47058 * 180.71923 * 1 2 3 31 31 H 1.09001 * 109.46676 * 300.71436 * 1 2 3 32 32 H 1.08998 * 109.47576 * 60.71588 * 1 2 3 33 33 H 1.08992 * 110.40719 * 335.93693 * 4 2 1 34 34 H 1.09000 * 110.40697 * 98.37387 * 4 2 1 35 35 H 1.09001 * 109.52052 * 46.59352 * 10 8 6 36 36 H 1.09003 * 109.51710 * 166.77315 * 10 8 6 37 37 H 0.97005 * 119.50425 * 184.41258 * 13 11 10 38 38 H 0.96998 * 119.53499 * 185.71298 * 16 14 13 39 39 H 1.09004 * 110.40486 * 201.62525 * 17 5 4 40 40 H 1.09003 * 110.50809 * 79.25233 * 17 5 4 41 41 H 1.09002 * 109.47188 * 60.00135 * 19 18 2 42 42 H 1.09001 * 109.47097 * 179.97438 * 19 18 2 43 43 H 1.09000 * 109.46954 * 299.99777 * 19 18 2 44 44 H 1.09005 * 109.47208 * 299.99617 * 20 18 2 45 45 H 1.08999 * 109.47402 * 59.99392 * 20 18 2 46 46 H 0.97006 * 119.99588 * 359.97438 * 21 20 18 47 47 H 0.97001 * 120.00233 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2255 5 7 3.2679 -1.4788 -0.7250 6 6 4.4436 -1.6615 -1.3581 7 8 5.3391 -2.2691 -0.8107 8 6 4.6455 -1.1107 -2.7463 9 1 4.1878 -0.1239 -2.8156 10 6 3.9941 -2.0476 -3.7662 11 6 4.8321 -3.2943 -3.8998 12 8 4.2996 -4.3638 -4.1061 13 7 6.1710 -3.2192 -3.7894 14 6 6.7751 -2.0618 -3.4732 15 8 7.9807 -1.9690 -3.5958 16 7 6.0787 -1.0044 -3.0253 17 6 2.8836 -1.9404 0.6292 18 6 2.0687 -0.7712 1.2228 19 6 0.9101 -1.3030 2.0688 20 6 2.9710 0.1319 2.0661 21 7 3.4708 -0.6183 3.2209 22 6 4.3036 -0.0119 4.1230 23 1 4.5915 1.0196 3.9834 24 6 4.7767 -0.7226 5.2174 25 7 4.4254 -1.9795 5.3878 26 14 5.9121 0.1049 6.4486 27 1 6.1528 1.5102 6.0332 28 1 5.2815 0.0876 7.7929 29 1 7.2044 -0.6250 6.4986 30 1 -0.3633 -1.0276 0.0129 31 1 -0.3633 0.5249 0.8835 32 1 -0.3634 0.5026 -0.8963 33 1 1.3242 -1.4857 -1.5798 34 1 2.3383 -0.0774 -2.0215 35 1 2.9935 -2.3159 -3.4273 36 1 3.9303 -1.5465 -4.7321 37 1 6.7081 -4.0128 -3.9401 38 1 6.5317 -0.1583 -2.8850 39 1 3.7716 -2.1297 1.2325 40 1 2.2693 -2.8387 0.5665 41 1 0.2985 -1.9746 1.4662 42 1 1.3061 -1.8452 2.9275 43 1 0.3003 -0.4686 2.4152 44 1 3.8119 0.4718 1.4615 45 1 2.4007 0.9939 2.4124 46 1 3.2119 -1.5447 3.3464 47 1 4.7563 -2.4762 6.1524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182768009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:48 Heat of formation + Delta-G solvation = -72.332080 kcal Electronic energy + Delta-G solvation = -31033.129864 eV Core-core repulsion = 26830.802186 eV Total energy + Delta-G solvation = -4202.327678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10617 -40.33061 -39.08737 -38.51151 -36.01775 -34.90143 -34.51164 -33.42026 -31.62230 -31.32322 -29.67365 -27.57002 -26.45980 -25.72005 -25.00890 -23.74179 -23.36505 -21.42740 -20.75569 -19.63806 -18.58216 -18.41422 -17.91107 -17.52058 -17.11277 -16.41324 -16.37467 -15.92648 -15.54259 -15.03061 -14.89996 -14.87065 -14.53209 -14.16781 -14.00573 -13.79962 -13.71337 -13.13345 -13.03405 -12.91139 -12.74397 -12.60967 -12.12265 -11.99570 -11.62380 -11.51609 -11.29679 -11.06518 -11.00010 -10.84498 -10.64707 -10.57191 -10.52266 -10.45293 -10.37709 -10.21520 -9.92894 -9.62447 -9.44040 -8.88624 -8.75246 -6.91843 -5.76167 -3.04588 1.40806 2.10753 2.41824 2.54353 2.94456 2.98031 3.44440 3.49917 3.52282 3.82570 3.92659 4.09957 4.39290 4.46177 4.55268 4.60953 4.71887 4.79119 4.85202 5.13928 5.24893 5.26691 5.40743 5.48441 5.56633 5.60255 5.63489 5.77253 5.83284 5.91181 5.94065 6.04710 6.10072 6.15050 6.19011 6.36577 6.43855 6.46422 6.63612 6.73928 6.81280 6.95276 7.17711 7.44631 7.70690 7.89755 7.99494 8.42557 9.54165 10.10538 10.44656 11.46774 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003626 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.011843 B = 7719.871872 C = 9361.906898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.099 3.901 5 N -0.613 5.613 6 C 0.507 3.493 7 O -0.512 6.512 8 C 0.124 3.876 9 H 0.134 0.866 10 C -0.148 4.148 11 C 0.526 3.474 12 O -0.497 6.497 13 N -0.670 5.670 14 C 0.725 3.275 15 O -0.553 6.553 16 N -0.705 5.705 17 C 0.113 3.887 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.169 3.831 21 N -0.729 5.729 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.428 0.572 38 H 0.429 0.571 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.020 0.980 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 4.330 -22.189 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.024 4.024 5 N -0.348 5.348 6 C 0.292 3.708 7 O -0.385 6.385 8 C 0.014 3.986 9 H 0.152 0.848 10 C -0.189 4.189 11 C 0.313 3.687 12 O -0.369 6.369 13 N -0.339 5.339 14 C 0.426 3.574 15 O -0.427 6.427 16 N -0.364 5.364 17 C -0.009 4.009 18 C -0.077 4.077 19 C -0.192 4.192 20 C 0.042 3.958 21 N -0.374 5.374 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.270 0.730 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.611 3.570 -22.043 23.933 hybrid contribution 0.870 0.227 0.962 1.317 sum -7.741 3.797 -21.081 22.776 Atomic orbital electron populations 1.21896 0.93987 1.02292 1.01803 1.22145 0.96204 0.99734 0.93662 0.89830 1.22648 0.87005 0.95579 0.97194 1.48918 1.12240 1.55374 1.18241 1.20453 0.81491 0.81328 0.87554 1.90835 1.40537 1.40442 1.66731 1.21055 0.82875 1.02353 0.92324 0.84826 1.22235 1.01052 0.93541 1.02091 1.20718 0.82249 0.91218 0.74510 1.90809 1.71532 1.29991 1.44563 1.44135 1.09004 1.13639 1.67119 1.15500 0.84950 0.79995 0.76990 1.91047 1.11872 1.81663 1.58110 1.44738 1.08536 1.13781 1.69379 1.22607 1.00616 0.95929 0.81756 1.21708 0.96008 0.95371 0.94565 1.21871 0.96555 1.00940 0.99811 1.20641 0.93603 0.92939 0.88640 1.42394 1.57239 1.12867 1.24915 1.19221 1.20481 0.95719 1.01647 0.91306 1.24708 1.00998 0.96054 0.98978 1.69649 1.48933 1.08453 1.31001 0.86148 0.80496 0.78402 0.81314 1.20613 1.21879 1.21853 0.91982 0.91687 0.92963 0.90479 0.90524 0.85235 0.85316 0.73043 0.73079 0.88186 0.91298 0.93037 0.91248 0.92089 0.96633 0.96195 0.78109 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.93 37.16 0.29 -0.78 16 2 C -0.10 -0.92 3.30 -89.22 -0.29 -1.22 16 3 H 0.08 0.80 7.71 -51.93 -0.40 0.40 16 4 C 0.10 0.75 6.22 -2.40 -0.01 0.73 16 5 N -0.61 -7.39 3.32 -169.30 -0.56 -7.95 16 6 C 0.51 6.70 6.80 -10.99 -0.07 6.63 16 7 O -0.51 -9.67 16.42 5.56 0.09 -9.58 16 8 C 0.12 0.96 3.07 -69.11 -0.21 0.75 16 9 H 0.13 0.48 6.98 -51.93 -0.36 0.12 16 10 C -0.15 -0.93 5.71 -27.81 -0.16 -1.09 16 11 C 0.53 5.60 7.44 -11.03 -0.08 5.52 16 12 O -0.50 -6.79 17.93 5.59 0.10 -6.69 16 13 N -0.67 -7.48 5.18 -16.02 -0.08 -7.57 16 14 C 0.73 8.97 7.98 -87.75 -0.70 8.27 16 15 O -0.55 -8.70 17.97 5.33 0.10 -8.60 16 16 N -0.71 -6.68 4.91 -60.11 -0.29 -6.97 16 17 C 0.11 1.71 5.92 -2.41 -0.01 1.70 16 18 C -0.08 -1.05 0.73 -153.11 -0.11 -1.16 16 19 C -0.13 -1.82 7.11 37.16 0.26 -1.55 16 20 C 0.17 3.20 4.94 -4.04 -0.02 3.18 16 21 N -0.73 -17.89 4.79 -59.91 -0.29 -18.18 16 22 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.33 5.50 -17.44 -0.10 -0.42 16 25 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 26 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.06 0.46 6.63 -51.93 -0.34 0.11 16 31 H 0.06 0.54 6.99 -51.93 -0.36 0.18 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.47 7.86 -51.93 -0.41 0.06 16 34 H 0.08 0.32 6.74 -51.93 -0.35 -0.03 16 35 H 0.13 0.68 7.83 -51.93 -0.41 0.27 16 36 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.43 4.45 8.86 -40.82 -0.36 4.09 16 38 H 0.43 3.39 8.90 -40.82 -0.36 3.02 16 39 H 0.10 2.03 6.94 -51.93 -0.36 1.67 16 40 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 41 H 0.05 0.56 6.69 -51.93 -0.35 0.22 16 42 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 43 H 0.06 0.79 6.89 -51.93 -0.36 0.43 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.38 9.88 5.99 -40.82 -0.24 9.63 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -38.92 375.35 -7.62 -46.53 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.66 Total: 9.48 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -1.37 Total: 13.71 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.50 Total: -68.22 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.29 Total: -24.87 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.92 -7.62 -46.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182768009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.798 kcal (2) G-P(sol) polarization free energy of solvation -38.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds